Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G21500 Arabidopsis thaliana HOM05D006486 ORTHO05D007888 1.1e-113 413.3 216 100.0
AL7G32570 Arabidopsis lyrata HOM05D006486 ORTHO05D007888 4.7e-83 311.6 228 77.6
Carub.0007s1992 Capsella rubella HOM05D006486 ORTHO05D007888 4.4e-73 278.5 235 71.9
CARHR228160 Cardamine hirsuta HOM05D006486 ORTHO05D007888 3.1e-66 255.8 223 66.8
A01p12810 Brassica napus HOM05D006486 ORTHO05D007888 5.6e-60 235.0 218 63.3
BolC1t01497H Brassica oleracea HOM05D006486 ORTHO05D007888 8.9e-58 227.6 234 63.2
Thhalv10026096m.g Eutrema salsugineum HOM05D006486 ORTHO05D007888 1.3e-56 223.8 242 59.9
C01p15430 Brassica napus HOM05D006486 ORTHO05D007888 2.9e-56 222.6 234 62.4
BraA01t01225Z Brassica rapa HOM05D006486 ORTHO05D007888 3.2e-55 219.2 208 61.5
Aa31LG6G3500 Aethionema arabicum HOM05D006486 ORTHO05D007888 1.6e-54 216.9 244 53.7
Sp7g19620 Schrenkiella parvula HOM05D006486 ORTHO05D007888 3.5e-54 215.7 238 60.9
BcaNung02794 Brassica carinata HOM05D006486 ORTHO05D007888 7.8e-54 214.5 240 57.9
THA.LOC104812719 Tarenaya hassleriana HOM05D006486 ORTHO05D007888 6.4e-48 194.9 232 52.6
GSVIVG01003184001 Vitis vinifera HOM05D006486 ORTHO05D007888 3.3e-36 156.0 224 46.9
TWI63G1620 Tripterygium wilfordii HOM05D006486 ORTHO05D007888 1.1e-31 141.0 231 43.3
Cpa.g.sc27.128 Carica papaya HOM05D006486 ORTHO05D007888 1.9e-31 140.2 250 40.8
Gohir.A10G021000 Gossypium hirsutum HOM05D006486 ORTHO05D007888 1.9e-31 140.2 235 43.4
Manes.16G020500 Manihot esculenta HOM05D006486 ORTHO05D007888 4.2e-31 139.0 240 44.6
QL04p018235 Quercus lobata HOM05D006486 ORTHO05D007888 7.1e-31 138.3 242 39.7
Duzib235G1194 Durio zibethinus HOM05D006486 ORTHO05D007888 9.3e-31 137.9 222 45.0
Gohir.D10G021800 Gossypium hirsutum HOM05D006486 ORTHO05D007888 9.3e-31 137.9 231 42.9
Gorai.011G022900 Gossypium raimondii HOM05D006486 ORTHO05D007888 9.3e-31 137.9 231 42.9
Nn1g06762 Nelumbo nucifera HOM05D006486 ORTHO05D007888 1.2e-30 137.5 246 42.3
Thecc.06G199700 Theobroma cacao HOM05D006486 ORTHO05D007888 2.1e-30 136.7 218 43.1
Lalb_Chr20g0122301 Lupinus albus HOM05D006486 ORTHO05D007888 7.9e-30 134.8 253 38.3
Manes.17G039100 Manihot esculenta HOM05D006486 ORTHO05D007888 3.0e-29 132.9 245 41.6
PGR004G0715 Punica granatum HOM05D006486 ORTHO05D007888 3.0e-29 132.9 225 40.4
COL.COLO4_31586 Corchorus olitorius HOM05D006486 ORTHO05D007888 8.7e-29 131.3 229 42.4
MD05G1325600 Malus domestica HOM05D006486 ORTHO05D007888 8.7e-29 131.3 265 37.7
Sabra11G0029300 Salix brachista HOM05D006486 ORTHO05D007888 1.1e-28 131.0 245 40.0
Cfa000350 Carpinus fangiana HOM05D006486 ORTHO05D007888 4.3e-28 129.0 262 38.5
TAR624G1400 Trochodendron aralioides HOM05D006486 ORTHO05D007888 4.3e-28 129.0 227 44.5
Haze_06575 Corylus avellana HOM05D006486 ORTHO05D007888 5.6e-28 128.6 257 38.5
Potri.011G042600 Populus trichocarpa HOM05D006486 ORTHO05D007888 5.6e-28 128.6 243 39.1
arahy.Tifrunner.gnm1.ann1.4FF3SU Arachis hypogaea HOM05D006486 ORTHO05D007888 9.6e-28 127.9 257 37.0
Haze_06576 Corylus avellana HOM05D006486 ORTHO05D007888 9.6e-28 127.9 257 37.7
MD10G1303500 Malus domestica HOM05D006486 ORTHO05D007888 9.6e-28 127.9 254 40.6
arahy.Tifrunner.gnm1.ann1.3M60GY Arachis hypogaea HOM05D006486 ORTHO05D007888 2.1e-27 126.7 257 36.6
CSS0009661 Camellia sinensis var. sinensis HOM05D006486 ORTHO05D007888 2.1e-27 126.7 231 39.8
RcHm_v2.0_Chr5g0006301 Rosa chinensis HOM05D006486 ORTHO05D007888 6.2e-27 125.2 256 37.5
FAN16G2112 Fragaria x ananassa HOM05D006486 ORTHO05D007888 1.8e-26 123.6 263 38.8
Oeu014709.1 Olea europaea HOM05D006486 ORTHO05D007888 3.1e-26 122.9 244 38.9
TAR629G2100 Trochodendron aralioides HOM05D006486 ORTHO05D007888 3.1e-26 122.9 221 41.2
TPR.G25690 Trifolium pratense HOM05D006486 ORTHO05D007888 4.0e-26 122.5 247 38.9
Aqoxy1G03879 Aquilegia oxysepala HOM05D006486 ORTHO05D007888 5.3e-26 122.1 229 37.1
Nn1g03891 Nelumbo nucifera HOM05D006486 ORTHO05D007888 6.9e-26 121.7 241 41.5
Peaxi162Scf00083g00023 Petunia axillaris HOM05D006486 ORTHO05D007888 6.9e-26 121.7 238 38.2
Glyma.15G067400 Glycine max HOM05D006486 ORTHO05D007888 1.2e-25 120.9 246 37.0
Cc02_g12410 Coffea canephora HOM05D006486 ORTHO05D007888 2.6e-25 119.8 228 39.5
Glyma.13G246500 Glycine max HOM05D006486 ORTHO05D007888 3.4e-25 119.4 246 37.4
CiPaw.09G157800 Carya illinoinensis HOM05D006486 ORTHO05D007888 4.5e-25 119.0 263 36.9
Potri.004G034200 Populus trichocarpa HOM05D006486 ORTHO05D007888 4.5e-25 119.0 242 37.2
MSTRG.7289 Avicennia marina HOM05D006486 ORTHO05D007888 5.8e-25 118.6 241 40.7
FAN25G3184 Fragaria x ananassa HOM05D006486 ORTHO05D007888 7.6e-25 118.2 263 37.6
Actinidia24058 Actinidia chinensis HOM05D006486 ORTHO05D007888 9.9e-25 117.9 202 41.6
Lj4g0025313 Lotus japonicus HOM05D006486 ORTHO05D007888 9.9e-25 117.9 251 38.6
Medtr2g011760 Medicago truncatula HOM05D006486 ORTHO05D007888 1.3e-24 117.5 240 35.8
Sabra04G0019900 Salix brachista HOM05D006486 ORTHO05D007888 2.2e-24 116.7 238 39.1
Prupe.4G037000 Prunus persica HOM05D006486 ORTHO05D007888 2.9e-24 116.3 275 36.7
SGA_v2.0_scaffold7G03946 Striga asiatica HOM05D006486 ORTHO05D007888 4.9e-24 115.5 242 38.4
Gorai.010G254200 Gossypium raimondii HOM05D006486 ORTHO05D007888 6.4e-24 115.2 204 42.6
Psat1g208760 Pisum sativum HOM05D006486 ORTHO05D007888 6.4e-24 115.2 234 36.8
FAN21G2539 Fragaria x ananassa HOM05D006486 ORTHO05D007888 1.1e-23 114.4 263 38.4
FvH4_3g03970 Fragaria vesca HOM05D006486 ORTHO05D007888 1.9e-23 113.6 265 38.1
FAN11G1020 Fragaria x ananassa HOM05D006486 ORTHO05D007888 1.9e-23 113.6 265 38.1
Medtr4g091220 Medicago truncatula HOM05D006486 ORTHO05D007888 2.4e-23 113.2 248 38.3
Gohir.D06G211933 Gossypium hirsutum HOM05D006486 ORTHO05D007888 3.2e-23 112.8 212 41.0
TPR.G36802 Trifolium pratense HOM05D006486 ORTHO05D007888 3.2e-23 112.8 243 35.0
Ciclev10016271m.g Citrus clementina HOM05D006486 ORTHO05D007888 1.2e-22 110.9 246 38.2
CsaV3_6G049740 Cucumis sativus L. HOM05D006486 ORTHO05D007888 3.5e-22 109.4 237 40.1
AT4G05018 Arabidopsis thaliana HOM05D006486 ORTHO05D007888 4.6e-22 109.0 145 51.7
ClCG01G022550 Citrullus lanatus HOM05D006486 ORTHO05D007888 6.0e-22 108.6 223 37.7
Lj6g0020154 Lotus japonicus HOM05D006486 ORTHO05D007888 6.0e-22 108.6 239 40.6
PSO210G7027 Papaver somniferum HOM05D006486 ORTHO05D007888 6.0e-22 108.6 209 40.2
Atru.chr10.2014 Acer truncatum HOM05D006486 ORTHO05D007888 1.0e-21 107.8 262 38.2
Rhsim02G0119500 Rhododendron simsii HOM05D006486 ORTHO05D007888 1.0e-21 107.8 276 33.7
Ca_00252_v3 Cicer arietinum L. HOM05D006486 ORTHO05D007888 1.3e-21 107.5 247 34.4
Nitab4.5_0002222g0020 Nicotiana tabacum HOM05D006486 ORTHO05D007888 3.0e-21 106.3 261 35.2
Nitab4.5_0000190g0060 Nicotiana tabacum HOM05D006486 ORTHO05D007888 5.1e-21 105.5 286 33.9
PSO832G0007 Papaver somniferum HOM05D006486 ORTHO05D007888 5.1e-21 105.5 209 39.7
Solyc02g079160.2 Solanum lycopersicum HOM05D006486 ORTHO05D007888 2.5e-20 103.2 270 33.3
MSTRG.15936 Avicennia marina HOM05D006486 ORTHO05D007888 3.3e-20 102.8 245 36.7
Glyma.08G059200 Glycine max HOM05D006486 ORTHO05D007888 3.3e-20 102.8 266 32.7
Phvul.006G192300 Phaseolus vulgaris HOM05D006486 ORTHO05D007888 3.3e-20 102.8 247 37.2
Lj1P1213T18 Lonicera japonica HOM05D006486 ORTHO05D007888 4.3e-20 102.4 163 41.1
VMungo0540G0810 Vigna mungo HOM05D006486 ORTHO05D007888 4.3e-20 102.4 246 36.2
PGSC0003DMG400022406 Solanum tuberosum HOM05D006486 ORTHO05D007888 7.4e-20 101.7 269 32.3
Actinidia11810 Actinidia chinensis HOM05D006486 ORTHO05D007888 3.7e-19 99.4 126 46.8
CANSAT56G1095 Cannabis sativa HOM05D006486 ORTHO05D007888 6.2e-19 98.6 275 31.3
Nitab4.5_0006573g0010 Nicotiana tabacum HOM05D006486 ORTHO05D007888 8.1e-19 98.2 292 31.8
HanXRQChr16g0517421 Helianthus annuus HOM05D006486 ORTHO05D007888 1.1e-18 97.8 293 31.1
Sopen02g023960 Solanum pennellii HOM05D006486 ORTHO05D007888 4.0e-18 95.9 268 32.5
Migut.M01215 Erythranthe guttata HOM05D006486 ORTHO05D007888 5.3e-18 95.5 231 36.4
Sed0019218 Sechium edule HOM05D006486 ORTHO05D007888 5.3e-18 95.5 246 35.4
Psat7g109320 Pisum sativum HOM05D006486 ORTHO05D007888 6.9e-18 95.1 237 34.2
Ca_18481_v3 Cicer arietinum L. HOM05D006486 ORTHO05D007888 9.0e-18 94.7 128 45.3
MELO3C007322.2 Cucumis melo HOM05D006486 ORTHO05D007888 9.0e-18 94.7 232 34.5
AL6G48620 Arabidopsis lyrata HOM05D006486 ORTHO05D007888 2.0e-17 93.6 131 48.9
HanXRQChr08g0224091 Helianthus annuus HOM05D006486 ORTHO05D007888 7.6e-17 91.7 329 28.3
Oeu059548.1 Olea europaea HOM05D006486 ORTHO05D007888 1.0e-16 91.3 212 35.4
Gohir.D09G070600 Gossypium hirsutum HOM05D006486 ORTHO05D007888 2.9e-16 89.7 212 39.2
Gorai.006G085300 Gossypium raimondii HOM05D006486 ORTHO05D007888 2.9e-16 89.7 212 39.2
VMungo0251G3177 Vigna mungo HOM05D006486 ORTHO05D007888 2.9e-16 89.7 131 44.3
Lsat_1_v5_gn_4_56921 Lactuca sativa HOM05D006486 ORTHO05D007888 6.5e-16 88.6 141 42.6
ECA234G0536 Erigeron canadensis HOM05D006486 ORTHO05D007888 1.9e-15 87.0 155 40.0
Phvul.002G221700 Phaseolus vulgaris HOM05D006486 ORTHO05D007888 3.2e-15 86.3 129 42.6
Oeu030052.1 Olea europaea HOM05D006486 ORTHO05D007888 4.2e-15 85.9 177 37.3
Oeu043421.1 Olea europaea HOM05D006486 ORTHO05D007888 4.2e-15 85.9 218 38.5
SalBow8G4438 Salvia bowleyana HOM05D006486 ORTHO05D007888 2.7e-14 83.2 215 34.9
Sed0006081 Sechium edule HOM05D006486 ORTHO05D007888 1.8e-13 80.5 128 43.0
DCAR_004139 Daucus carota HOM05D006486 ORTHO05D007888 6.7e-13 78.6 200 38.0
MBI02_g06002_MAGBIO Magnolia biondii HOM05D007621 ORTHO05D009631 2.5e-12 76.6 184 34.2
CDE05G2026 Ceratophyllum demersum HOM05D006486 ORTHO05D007888 7.4e-12 75.1 151 38.4
CDE05G2620 Ceratophyllum demersum HOM05D006486 ORTHO05D007888 1.1e-10 71.2 267 30.3
EL10Ac8g20532 Beta vulgaris HOM05D006486 ORTHO05D007888 1.7e-08 63.9 312 25.6
Oeu051330.1 Olea europaea HOM05D006486 ORTHO05D007888 7.2e-07 58.5 92 45.7


User provided reference genes

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