Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G21105 Arabidopsis thaliana HOM05D004126 ORTHO05D004818 6.6e-31 136.7 69 100.0
AL7G33020 Arabidopsis lyrata HOM05D004126 ORTHO05D004818 1.5e-30 135.6 69 98.6
BcaNung06968 Brassica carinata HOM05D004126 ORTHO05D004818 1.5e-30 135.6 69 97.1
A08p15270 Brassica napus HOM05D004126 ORTHO05D004818 1.5e-30 135.6 69 97.1
C03p83510 Brassica napus HOM05D004126 ORTHO05D004818 1.5e-30 135.6 69 97.1
C07p51070 Brassica napus HOM05D004126 ORTHO05D004818 1.5e-30 135.6 69 97.1
BolC7t45607H Brassica oleracea HOM05D004126 ORTHO05D004818 1.5e-30 135.6 69 97.1
BraA03t14337Z Brassica rapa HOM05D004126 ORTHO05D004818 1.5e-30 135.6 69 97.1
BraA08t33505Z Brassica rapa HOM05D004126 ORTHO05D004818 1.5e-30 135.6 69 97.1
Carub.0007s2032 Capsella rubella HOM05D004126 ORTHO05D004818 1.5e-30 135.6 69 97.1
A01p12450 Brassica napus HOM05D004126 ORTHO05D004818 1.9e-30 135.2 69 97.1
CARHR227690 Cardamine hirsuta HOM05D004126 ORTHO05D004818 2.5e-30 134.8 69 98.6
BcaC01g00712 Brassica carinata HOM05D004126 ORTHO05D004818 3.3e-30 134.4 69 95.7
BolC3t20632H Brassica oleracea HOM05D004126 ORTHO05D004818 3.3e-30 134.4 69 95.7
BcaC01g00715 Brassica carinata HOM05D004126 ORTHO05D004818 4.3e-30 134.0 69 94.2
BcaC09g51261 Brassica carinata HOM05D004126 ORTHO05D004818 4.3e-30 134.0 69 97.1
C01p15030 Brassica napus HOM05D004126 ORTHO05D004818 4.3e-30 134.0 69 97.1
BolC1t01452H Brassica oleracea HOM05D004126 ORTHO05D004818 4.3e-30 134.0 69 97.1
Sp7g19190 Schrenkiella parvula HOM05D004126 ORTHO05D004818 5.6e-30 133.7 69 95.7
BraA01t01191Z Brassica rapa HOM05D004126 ORTHO05D004818 7.3e-30 133.3 69 95.7
A03p52630 Brassica napus HOM05D004126 ORTHO05D004818 1.2e-29 132.5 69 95.7
THA.LOC104800546 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 7.6e-27 123.2 68 89.7
THA.LOC109117263 Tarenaya hassleriana HOM05D004126 ORTHO05D004818 7.6e-27 123.2 68 88.2
Ciclev10029753m.g Citrus clementina HOM05D004126 ORTHO05D004818 2.4e-25 118.2 67 86.6
ClCG02G021980 Citrullus lanatus HOM05D004126 ORTHO05D004818 4.1e-25 117.5 68 82.4
Glyma.11G187900 Glycine max HOM05D004126 ORTHO05D004818 5.4e-25 117.1 68 82.4
Glyma.12G086600 Glycine max HOM05D004126 ORTHO05D004818 7.1e-25 116.7 68 82.4
ClCG02G021990 Citrullus lanatus HOM05D004126 ORTHO05D004818 9.2e-25 116.3 66 84.8
MELO3C021443.2 Cucumis melo HOM05D004126 ORTHO05D004818 9.2e-25 116.3 66 86.4
Phvul.011G091700 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 9.2e-25 116.3 69 79.7
CsaV3_6G014810 Cucumis sativus L. HOM05D004126 ORTHO05D004818 1.2e-24 115.9 66 83.3
Lsat_1_v5_gn_2_95660 Lactuca sativa HOM05D004126 ORTHO05D004818 1.2e-24 115.9 69 78.3
arahy.Tifrunner.gnm1.ann1.M99YM4 Arachis hypogaea HOM05D004126 ORTHO05D004818 2.1e-24 115.2 68 80.9
Eucgr.J00455 Eucalyptus grandis HOM05D004126 ORTHO05D004818 2.1e-24 115.2 68 83.8
Sed0008155 Sechium edule HOM05D004126 ORTHO05D004818 2.7e-24 114.8 68 80.9
Thecc.09G289400 Theobroma cacao HOM05D004126 ORTHO05D004818 2.7e-24 114.8 68 82.4
vmacro14365 Vaccinium macrocarpon HOM05D004126 ORTHO05D004818 2.7e-24 114.8 67 80.6
Potri.011G156400 Populus trichocarpa HOM05D004126 ORTHO05D004818 3.5e-24 114.4 69 81.2
arahy.Tifrunner.gnm1.ann1.A0MYZQ Arachis hypogaea HOM05D004126 ORTHO05D004818 4.6e-24 114.0 68 80.9
arahy.Tifrunner.gnm1.ann1.IBK94M Arachis hypogaea HOM05D004126 ORTHO05D004818 4.6e-24 114.0 68 80.9
Migut.D02341 Erythranthe guttata HOM05D004126 ORTHO05D004818 4.6e-24 114.0 68 79.4
Glyma.12G182500 Glycine max HOM05D004126 ORTHO05D004818 4.6e-24 114.0 68 79.4
arahy.Tifrunner.gnm1.ann1.S740RW Arachis hypogaea HOM05D004126 ORTHO05D004818 6.0e-24 113.6 68 79.4
Manes.04G007100 Manihot esculenta HOM05D004126 ORTHO05D004818 6.0e-24 113.6 68 76.5
SalBow3G0427 Salvia bowleyana HOM05D004126 ORTHO05D004818 6.0e-24 113.6 67 77.6
Sed0026235 Sechium edule HOM05D004126 ORTHO05D004818 6.0e-24 113.6 68 77.9
Ca_01671_v3 Cicer arietinum L. HOM05D004126 ORTHO05D004818 7.8e-24 113.2 68 80.9
Lalb_Chr24g0395191 Lupinus albus HOM05D004126 ORTHO05D004818 7.8e-24 113.2 68 79.4
Sabra16G0311900 Salix brachista HOM05D004126 ORTHO05D004818 7.8e-24 113.2 69 76.8
ECA248G1359 Erigeron canadensis HOM05D004126 ORTHO05D004818 1.3e-23 112.5 69 76.8
ECA238G2243 Erigeron canadensis HOM05D004126 ORTHO05D004818 1.7e-23 112.1 69 78.3
MD11G1159300 Malus domestica HOM05D004126 ORTHO05D004818 1.7e-23 112.1 68 77.9
Potri.001G460200 Populus trichocarpa HOM05D004126 ORTHO05D004818 1.7e-23 112.1 69 76.8
HanXRQChr04g0094651 Helianthus annuus HOM05D004126 ORTHO05D004818 2.3e-23 111.7 69 78.3
MD03G1165300 Malus domestica HOM05D004126 ORTHO05D004818 2.3e-23 111.7 68 77.9
Actinidia07223 Actinidia chinensis HOM05D004126 ORTHO05D004818 3.0e-23 111.3 68 77.9
Actinidia35453 Actinidia chinensis HOM05D004126 ORTHO05D004818 3.0e-23 111.3 68 77.9
AUR62003964 Chenopodium quinoa HOM05D004126 ORTHO05D004818 3.0e-23 111.3 66 78.8
Oeu050197.1 Olea europaea HOM05D004126 ORTHO05D004818 3.0e-23 111.3 68 79.4
Migut.N02508 Erythranthe guttata HOM05D004126 ORTHO05D004818 3.9e-23 110.9 68 79.4
QL01p013387 Quercus lobata HOM05D004126 ORTHO05D004818 3.9e-23 110.9 67 76.1
TWI12G1250 Tripterygium wilfordii HOM05D004126 ORTHO05D004818 5.1e-23 110.5 68 77.9
CANSAT54G1468 Cannabis sativa HOM05D004126 ORTHO05D004818 6.6e-23 110.2 68 75.0
CiPaw.14G102800 Carya illinoinensis HOM05D004126 ORTHO05D004818 6.6e-23 110.2 67 77.6
AUR62025834 Chenopodium quinoa HOM05D004126 ORTHO05D004818 6.6e-23 110.2 66 77.3
AUR62029880 Chenopodium quinoa HOM05D004126 ORTHO05D004818 6.6e-23 110.2 66 77.3
Peaxi162Scf00114g00210 Petunia axillaris HOM05D004126 ORTHO05D004818 6.6e-23 110.2 69 76.8
Phvul.005G126200 Phaseolus vulgaris HOM05D004126 ORTHO05D004818 6.6e-23 110.2 68 76.5
Psat4g069800 Pisum sativum HOM05D004126 ORTHO05D004818 6.6e-23 110.2 67 79.1
Prupe.6G122400 Prunus persica HOM05D004126 ORTHO05D004818 6.6e-23 110.2 69 78.3
FvH4_3g29830 Fragaria vesca HOM05D004126 ORTHO05D004818 8.6e-23 109.8 68 75.0
Lj3g0019761 Lotus japonicus HOM05D004126 ORTHO05D004818 8.6e-23 109.8 68 79.4
Medtr4g101930 Medicago truncatula HOM05D004126 ORTHO05D004818 8.6e-23 109.8 67 76.1
Oeu035542.1 Olea europaea HOM05D004126 ORTHO05D004818 8.6e-23 109.8 68 76.5
Lsat_1_v5_gn_1_62101 Lactuca sativa HOM05D004126 ORTHO05D004818 1.1e-22 109.4 69 75.4
DCAR_012178 Daucus carota HOM05D004126 ORTHO05D004818 1.5e-22 109.0 69 75.4
FAN16G2018 Fragaria x ananassa HOM05D004126 ORTHO05D004818 1.9e-22 108.6 68 75.0
FAN21G0712 Fragaria x ananassa HOM05D004126 ORTHO05D004818 1.9e-22 108.6 68 75.0
FAN25G0231 Fragaria x ananassa HOM05D004126 ORTHO05D004818 1.9e-22 108.6 68 75.0
Glyma.13G318450 Glycine max HOM05D004126 ORTHO05D004818 1.9e-22 108.6 68 75.0
MSTRG.12360 Avicennia marina HOM05D004126 ORTHO05D004818 2.5e-22 108.2 68 75.0
CSS0047176 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 2.5e-22 108.2 68 76.5
Gohir.D08G014400 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.5e-22 108.2 68 76.5
Gorai.004G008800 Gossypium raimondii HOM05D004126 ORTHO05D004818 2.5e-22 108.2 68 76.5
Lj3g0005404 Lotus japonicus HOM05D004126 ORTHO05D004818 2.5e-22 108.2 68 77.9
Lalb_Chr19g0136701 Lupinus albus HOM05D004126 ORTHO05D004818 2.5e-22 108.2 69 71.0
PGR119G0779 Punica granatum HOM05D004126 ORTHO05D004818 2.5e-22 108.2 68 75.0
Peaxi162Scf01284g00022 Petunia axillaris HOM05D004126 ORTHO05D004818 3.3e-22 107.8 68 73.5
HanXRQChr01g0019701 Helianthus annuus HOM05D004126 ORTHO05D004818 4.3e-22 107.5 69 75.4
Rhsim10G0039800 Rhododendron simsii HOM05D004126 ORTHO05D004818 4.3e-22 107.5 66 78.8
Gohir.D08G014300 Gossypium hirsutum HOM05D004126 ORTHO05D004818 5.6e-22 107.1 68 75.0
Gorai.004G008700 Gossypium raimondii HOM05D004126 ORTHO05D004818 5.6e-22 107.1 68 75.0
TPR.G28100 Trifolium pratense HOM05D004126 ORTHO05D004818 5.6e-22 107.1 66 77.3
Gohir.A08G004000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 7.3e-22 106.7 68 76.5
Hma1.2p1_0695F.1_g204510 Hydrangea macrophylla HOM05D004126 ORTHO05D004818 7.3e-22 106.7 69 73.9
Medtr4g053330 Medicago truncatula HOM05D004126 ORTHO05D004818 7.3e-22 106.7 67 74.6
Cc01_g09610 Coffea canephora HOM05D004126 ORTHO05D004818 9.6e-22 106.3 68 75.0
ECA233G1451 Erigeron canadensis HOM05D004126 ORTHO05D004818 9.6e-22 106.3 67 74.6
GSVIVG01031376001 Vitis vinifera HOM05D004126 ORTHO05D004818 9.6e-22 106.3 68 76.5
Ah.07g202810 Amaranthus hybridus HOM05D004126 ORTHO05D004818 1.2e-21 105.9 67 74.6
Duzib170G0121 Durio zibethinus HOM05D004126 ORTHO05D004818 1.2e-21 105.9 68 76.5
MBI14_g32122_MAGBIO Magnolia biondii HOM05D004126 ORTHO05D010914 1.2e-21 105.9 68 75.0
TPR.G37632 Trifolium pratense HOM05D004126 ORTHO05D004818 1.2e-21 105.9 67 73.1
Manes.11G159200 Manihot esculenta HOM05D004126 ORTHO05D004818 1.6e-21 105.5 68 73.5
Gohir.A08G004100 Gossypium hirsutum HOM05D004126 ORTHO05D004818 2.1e-21 105.1 68 75.0
Dinv29439 Davidia involucrata HOM05D004126 ORTHO05D004818 2.8e-21 104.8 68 73.5
Lsat_1_v5_gn_6_39460 Lactuca sativa HOM05D004126 ORTHO05D004818 2.8e-21 104.8 66 77.3
Nitab4.5_0004070g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 2.8e-21 104.8 68 72.1
RcHm_v2.0_Chr5g0055141 Rosa chinensis HOM05D004126 ORTHO05D004818 2.8e-21 104.8 68 70.6
CAN.G644.16 Capsicum annuum HOM05D004126 ORTHO05D004818 3.6e-21 104.4 68 72.1
Lalb_Chr03g0027971 Lupinus albus HOM05D004126 ORTHO05D004818 3.6e-21 104.4 69 68.1
Nitab4.5_0003082g0050 Nicotiana tabacum HOM05D004126 ORTHO05D004818 3.6e-21 104.4 69 73.9
PGSC0003DMG400007147 Solanum tuberosum HOM05D004126 ORTHO05D004818 3.6e-21 104.4 69 72.5
EL10Ac9g23026 Beta vulgaris HOM05D004126 ORTHO05D004818 4.7e-21 104.0 66 72.7
CSS0041849 Camellia sinensis var. sinensis HOM05D004126 ORTHO05D004818 4.7e-21 104.0 66 75.8
Medtr2g085045 Medicago truncatula HOM05D004126 ORTHO05D004818 4.7e-21 104.0 66 74.2
Sopen06g030950 Solanum pennellii HOM05D004126 ORTHO05D004818 6.2e-21 103.6 69 72.5
CAN.G919.11 Capsicum annuum HOM05D004126 ORTHO05D004818 8.1e-21 103.2 69 71.0
Nitab4.5_0009196g0030 Nicotiana tabacum HOM05D004126 ORTHO05D004818 8.1e-21 103.2 69 72.5
Psat5g255840 Pisum sativum HOM05D004126 ORTHO05D004818 8.1e-21 103.2 66 74.2
Sc10g0010310 Simmondsia chinensis HOM05D004126 ORTHO05D004818 8.1e-21 103.2 68 70.6
Thhalv10026571m.g Eutrema salsugineum HOM05D004126 ORTHO05D004818 1.1e-20 102.8 53 98.1
Nn2g11232 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.1e-20 102.8 68 73.5
Atru.chr3.3354 Acer truncatum HOM05D004126 ORTHO05D004818 1.4e-20 102.4 66 74.2
Hund13926 Selenicereus undatus HOM05D004126 ORTHO05D004818 1.4e-20 102.4 66 75.8
Zm00001eb351210 Zea mays HOM05D004126 ORTHO05D004818 1.4e-20 102.4 66 72.7
Eucgr.B03883 Eucalyptus grandis HOM05D004126 ORTHO05D004818 1.8e-20 102.1 65 72.3
Nn2g13476 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.8e-20 102.1 68 72.1
TPR.G23418 Trifolium pratense HOM05D004126 ORTHO05D004818 1.8e-20 102.1 66 74.2
Sopen03g017380 Solanum pennellii HOM05D004126 ORTHO05D004818 2.4e-20 101.7 67 71.6
Gohir.A05G083000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.1e-20 101.3 68 73.5
Gohir.D05G086000 Gossypium hirsutum HOM05D004126 ORTHO05D004818 3.1e-20 101.3 68 73.5
Gorai.009G087600 Gossypium raimondii HOM05D004126 ORTHO05D004818 3.1e-20 101.3 68 73.5
unitig_22.g6645 Utricularia gibba HOM05D004126 ORTHO05D004818 8.9e-20 99.8 68 67.6
unitig_8.g3289 Utricularia gibba HOM05D004126 ORTHO05D004818 8.9e-20 99.8 68 67.6
arahy.Tifrunner.gnm1.ann1.A24RK9 Arachis hypogaea HOM05D004126 ORTHO05D004818 1.5e-19 99.0 67 65.7
Os02g0162000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 1.5e-19 99.0 68 66.2
PGR102G0539 Punica granatum HOM05D004126 ORTHO05D004818 3.4e-19 97.8 66 71.2
Zm00001eb329410 Zea mays HOM05D004126 ORTHO05D004818 3.4e-19 97.8 68 66.2
Aa31LG6G3140 Aethionema arabicum HOM05D003300 ORTHO05D003731 4.4e-19 97.4 53 92.5
Os07g0647500 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 4.4e-19 97.4 68 67.6
PGSC0003DMG400026528 Solanum tuberosum HOM05D004126 ORTHO05D004818 4.4e-19 97.4 68 66.2
HPP92_018131 Vanilla planifolia HOM05D004126 ORTHO05D004818 7.6e-19 96.7 68 69.1
Sopen11g026730 Solanum pennellii HOM05D004126 ORTHO05D004818 9.9e-19 96.3 68 66.2
Zm00001eb110520 Zea mays HOM05D004126 ORTHO05D004818 1.3e-18 95.9 68 67.6
PSO384G3267 Papaver somniferum HOM05D004126 ORTHO05D004818 2.2e-18 95.1 66 72.7
TAR636G2319 Trochodendron aralioides HOM05D004126 ORTHO05D004818 2.2e-18 95.1 68 72.1
ATR1136G081 Amborella trichopoda HOM05D004126 ORTHO05D004818 6.4e-18 93.6 68 63.2
Gohir.A03G116500 Gossypium hirsutum HOM05D004126 ORTHO05D004818 8.4e-18 93.2 68 70.6
Nn2g13477 Nelumbo nucifera HOM05D004126 ORTHO05D004818 1.4e-17 92.4 62 71.0
C08p30760 Brassica napus HOM05D004126 ORTHO05D004818 2.4e-17 91.7 55 87.3
SGA_v2.0_scaffold83G26418 Striga asiatica HOM05D004126 ORTHO05D004818 7.1e-17 90.1 52 80.8
MELO3C021444.2 Cucumis melo HOM05D004126 ORTHO05D004818 1.0e-15 86.3 50 80.0
HanXRQChr14g0451651 Helianthus annuus HOM05D004126 ORTHO05D004818 1.0e-15 86.3 51 78.4
Duzib150G0214 Durio zibethinus HOM05D004126 ORTHO05D004818 1.3e-15 85.9 52 78.8
MD03G1137200 Malus domestica HOM05D004126 ORTHO05D004818 6.6e-15 83.6 50 78.0
BcaC07g41056 Brassica carinata HOM05D004126 ORTHO05D004818 1.1e-14 82.8 76 64.5
Haze_23434 Corylus avellana HOM05D004126 ORTHO05D004818 7.3e-14 80.1 52 73.1
CDE04G1551 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 2.1e-13 78.6 60 66.7
Aqoxy4G01986 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 8.1e-13 76.6 44 77.3
Nitab4.5_0006735g0040 Nicotiana tabacum HOM05D004126 ORTHO05D004818 8.1e-13 76.6 52 67.3
BcaB02g06868 Brassica carinata HOM05D004126 ORTHO05D004818 1.4e-12 75.9 36 100.0
SEGI_11030 Sequoiadendron giganteum HOM05D004126 ORTHO05D004818 1.4e-12 75.9 52 71.2
CDE02G2464 Ceratophyllum demersum HOM05D004126 ORTHO05D004818 4.0e-12 74.3 60 61.7
DCAR_010375 Daucus carota HOM05D004126 ORTHO05D004818 1.2e-11 72.8 51 72.5
Os05g0457000 Oryza sativa ssp. japonica HOM05D004126 ORTHO05D004818 2.6e-11 71.6 50 68.0
C02p14630 Brassica napus HOM05D001074 ORTHO05D001188 1.7e-10 68.9 36 91.7
C06p07750 Brassica napus HOM05D001074 ORTHO05D001188 1.7e-10 68.9 36 91.7
BolC2t07590H Brassica oleracea HOM05D001074 ORTHO05D001188 1.7e-10 68.9 36 91.7
C06p15650 Brassica napus HOM05D001074 ORTHO05D001188 4.9e-10 67.4 36 88.9
AagrBONN_evm.TU.Sc2ySwM_228.2832 Anthoceros agrestis HOM05D004126 ORTHO05D004818 1.4e-09 65.9 59 54.2
BcaC04g21006 Brassica carinata HOM05D001074 ORTHO05D001188 4.2e-09 64.3 36 86.1
C09p36720 Brassica napus HOM05D001074 ORTHO05D001188 4.2e-09 64.3 36 86.1
BolC9t56503H Brassica oleracea HOM05D001074 ORTHO05D001188 4.2e-09 64.3 36 86.1
Mapoly0085s0067 Marchantia polymorpha HOM05D004126 ORTHO05D004818 4.2e-09 64.3 56 55.4
Aqoxy3G03824 Aquilegia oxysepala HOM05D004126 ORTHO05D004818 5.4e-09 63.9 44 72.7
PSO384G1920 Papaver somniferum HOM05D004126 ORTHO05D004818 9.3e-09 63.2 43 69.8


User provided reference genes

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