Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 2.6e-191 672.2 406 100.0
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 5.1e-147 525.0 422 82.2
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 1.3e-134 483.8 427 78.5
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 6.0e-116 421.8 433 72.1
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 6.3e-105 385.2 439 67.0
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 4.1e-104 382.5 415 65.5
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 6.3e-97 358.6 431 60.8
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 7.0e-96 355.1 435 61.6
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 5.5e-93 345.5 423 58.9
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 1.8e-91 340.5 423 58.4
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 6.7e-91 338.6 421 57.2
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 9.7e-90 334.7 425 56.9
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 9.1e-88 328.2 429 61.3
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 9.1e-88 328.2 429 61.3
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 2.5e-85 320.1 421 60.6
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 4.2e-85 319.3 420 55.5
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 6.1e-84 315.5 420 60.2
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 8.3e-81 305.1 418 58.1
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 8.5e-78 295.0 410 54.1
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 1.5e-77 294.3 417 56.1
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 8.0e-76 288.5 417 55.6
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 8.0e-76 288.5 417 55.6
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 1.8e-75 287.3 418 53.8
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 1.8e-75 287.3 418 53.8
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 4.4e-66 256.1 419 49.2
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 2.3e-62 243.8 438 48.2
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 5.6e-61 239.2 435 47.6
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 5.8e-42 176.0 417 41.5
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 7.8e-39 165.6 402 38.3
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 8.6e-38 162.2 398 37.9
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 8.6e-38 162.2 398 37.9
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 1.1e-37 161.8 398 37.9
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.5e-37 161.4 410 40.7
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 1.1e-35 155.2 408 37.3
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 1.4e-35 154.8 408 38.7
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 6.8e-35 152.5 398 37.4
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 3.4e-34 150.2 398 37.9
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 4.4e-34 149.8 394 38.3
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 5.8e-34 149.4 398 39.4
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 9.9e-34 148.7 398 37.7
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 2.9e-33 147.1 398 38.2
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 3.8e-33 146.7 447 33.3
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 4.9e-33 146.4 399 38.6
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 8.4e-33 145.6 395 38.0
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.9e-32 144.4 402 39.3
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 3.2e-32 143.7 459 33.1
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 9.2e-32 142.1 436 34.4
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 2.7e-31 140.6 454 33.0
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 1.0e-30 138.7 453 32.0
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 6.6e-30 136.0 401 34.7
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 9.6e-29 132.1 396 36.6
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 3.6e-28 130.2 405 35.3
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 8.1e-28 129.0 401 31.7
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 1.4e-27 128.3 490 30.4
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 4.0e-27 126.7 435 34.7
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 9.0e-27 125.6 416 33.2
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 9.0e-27 125.6 466 33.5
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 3.4e-26 123.6 336 34.8
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 7.6e-26 122.5 401 35.7
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 3.8e-25 120.2 449 30.5
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 8.4e-25 119.0 472 30.3
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 1.9e-24 117.9 438 32.0
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 3.5e-23 113.6 419 31.7
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 4.6e-23 113.2 459 32.7
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 6.0e-23 112.8 424 30.7
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 1.0e-22 112.1 459 32.5
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 1.3e-22 111.7 276 35.5
C02p44970 Brassica napus HOM05D004305 ORTHO05D005159 1.7e-22 111.3 404 34.7
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 1.7e-22 111.3 318 33.6
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 1.7e-22 111.3 455 28.1
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 3.0e-22 110.5 315 34.3
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 3.0e-22 110.5 455 29.7
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 3.9e-22 110.2 194 41.2
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 5.1e-22 109.8 283 36.0
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 5.1e-22 109.8 336 32.4
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 8.7e-22 109.0 452 29.4
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.1e-21 108.6 249 36.1
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 1.1e-21 108.6 410 31.0
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 2.5e-21 107.5 323 35.6
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 2.5e-21 107.5 412 32.0
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 5.6e-21 106.3 317 33.1
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 5.6e-21 106.3 397 30.5
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 7.3e-21 105.9 442 30.8
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 9.6e-21 105.5 460 30.4
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 9.6e-21 105.5 196 42.9
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 1.3e-20 105.1 436 31.2
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 1.3e-20 105.1 365 31.8
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 1.3e-20 105.1 339 33.3
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.6e-20 103.6 450 29.1
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 3.6e-20 103.6 344 32.8
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 3.6e-20 103.6 460 28.0
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 6.2e-20 102.8 397 29.7
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 8.1e-20 102.4 397 29.7
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 8.1e-20 102.4 197 40.1
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 1.1e-19 102.1 419 29.8
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 1.1e-19 102.1 417 32.1
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 1.1e-19 102.1 421 29.9
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 3.1e-19 100.5 453 29.6
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 4.0e-19 100.1 412 29.4
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 4.0e-19 100.1 331 32.3
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 5.3e-19 99.8 325 34.5
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 9.0e-19 99.0 432 30.6
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 1.2e-18 98.6 298 35.2
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 2.0e-18 97.8 446 30.7
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 2.0e-18 97.8 397 28.5
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.6e-18 97.4 455 29.9
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 2.6e-18 97.4 408 29.7
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 5.8e-18 96.3 473 25.8
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.3e-17 95.1 217 37.3
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 2.2e-17 94.4 416 29.3
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 4.9e-17 93.2 311 34.7
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 4.9e-17 93.2 432 28.5
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 6.4e-17 92.8 456 30.0
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 6.4e-17 92.8 424 30.7
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 6.4e-17 92.8 416 27.2
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 8.4e-17 92.4 411 31.1
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 8.4e-17 92.4 467 25.9
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 2.4e-16 90.9 434 28.1
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 2.4e-16 90.9 438 29.0
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 3.2e-16 90.5 428 30.4
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 3.2e-16 90.5 428 27.6
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 4.2e-16 90.1 182 37.9
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 5.4e-16 89.7 213 35.2
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 1.2e-15 88.6 414 26.3
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 1.6e-15 88.2 414 26.3
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 2.1e-15 87.8 59 69.5
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 3.5e-15 87.0 495 29.1
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 6.0e-15 86.3 470 27.9
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 7.9e-15 85.9 64 67.2
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 7.9e-15 85.9 455 29.2
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 7.9e-15 85.9 328 33.2
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 1.0e-14 85.5 415 29.9
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 3.0e-14 84.0 423 27.7
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 8.7e-14 82.4 94 54.3
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 1.1e-13 82.0 440 28.2
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.5e-13 81.6 471 28.5
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 3.3e-13 80.5 410 29.0
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 4.3e-13 80.1 61 68.9
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 2.1e-12 77.8 448 27.7
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 2.1e-12 77.8 409 29.1
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 6.2e-12 76.3 188 35.1
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 8.1e-12 75.9 295 29.2
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 1.1e-11 75.5 176 36.9
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 1.1e-11 75.5 436 29.4
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 5.3e-11 73.2 394 28.7
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 6.9e-11 72.8 430 28.4
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 2.6e-10 70.9 421 27.1
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 3.4e-10 70.5 440 27.5
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 3.4e-10 70.5 421 26.8
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 8.4e-09 65.9 403 27.8
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.9e-08 64.7 60 56.7
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 4.2e-08 63.5 170 33.5
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 5.5e-08 63.2 53 62.3
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 7.9e-07 59.3 403 25.8
TPR.G30380 Trifolium pratense HOM05D004305 ORTHO05D005159 6.7e-06 56.2 180 41.7


User provided reference genes

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