Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G20720 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 4.8e-298 1027.3 620 100.0
Carub.0001s0438 Capsella rubella HOM05D005385 ORTHO05D006768 5.3e-212 741.5 625 72.6
AT1G05090 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 4.3e-198 695.3 445 89.4
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 1.3e-197 693.7 626 76.8
CARHR004550 Cardamine hirsuta HOM05D005385 ORTHO05D006768 1.2e-187 660.6 625 73.1
A08p36580 Brassica napus HOM05D005385 ORTHO05D006768 1.7e-162 577.0 621 69.2
BcaC05g24419 Brassica carinata HOM05D005385 ORTHO05D006768 1.2e-160 570.9 652 59.5
BolC8t46974H Brassica oleracea HOM05D005385 ORTHO05D006768 2.1e-160 570.1 620 67.4
C08p01740 Brassica napus HOM05D005385 ORTHO05D006768 1.8e-159 567.0 620 67.3
BraA08t35560Z Brassica rapa HOM05D005385 ORTHO05D006768 3.5e-155 552.7 621 68.0
A10p03600 Brassica napus HOM05D005385 ORTHO05D006768 5.2e-151 538.9 620 62.3
BolC5t29109H Brassica oleracea HOM05D005385 ORTHO05D006768 2.2e-149 533.5 644 60.4
C05p03280 Brassica napus HOM05D005385 ORTHO05D006768 3.7e-149 532.7 644 60.6
BraA10t42636Z Brassica rapa HOM05D005385 ORTHO05D006768 9.2e-148 528.1 620 63.1
Thhalv10006711m.g Eutrema salsugineum HOM05D005385 ORTHO05D006768 1.9e-137 493.8 871 50.9
Sp1g03960 Schrenkiella parvula HOM05D005385 ORTHO05D006768 7.3e-137 491.9 785 47.5
BcaB02g06881 Brassica carinata HOM05D005385 ORTHO05D006768 9.5e-137 491.5 627 62.8
Aa31LG1G19650 Aethionema arabicum HOM05D005385 ORTHO05D006768 1.4e-119 434.5 623 56.2
BcaC07g36864 Brassica carinata HOM05D005385 ORTHO05D006768 1.2e-115 421.4 481 56.1
THA.LOC104801549 Tarenaya hassleriana HOM05D005385 ORTHO05D006768 1.7e-101 374.4 656 44.1
AT1G05087 Arabidopsis thaliana HOM05D005385 ORTHO05D006768 6.1e-67 259.6 155 99.4
Potri.002G227200 Populus trichocarpa HOM05D005385 ORTHO05D006768 1.3e-32 145.6 340 33.5
Cfa014342 Carpinus fangiana HOM05D005385 ORTHO05D006768 2.5e-28 131.3 350 30.6
MD09G1071600 Malus domestica HOM05D005385 ORTHO05D006768 1.8e-26 125.2 360 31.1
QL08p031674 Quercus lobata HOM05D005385 ORTHO05D006768 1.8e-26 125.2 356 29.5
Haze_12803 Corylus avellana HOM05D005385 ORTHO05D006768 6.8e-26 123.2 353 29.5
Duzib138G1383 Durio zibethinus HOM05D005385 ORTHO05D006768 1.5e-25 122.1 353 30.9
Sabra02G0173800 Salix brachista HOM05D005385 ORTHO05D006768 9.8e-25 119.4 359 31.2
Hma1.2p1_0895F.1_g233780 Hydrangea macrophylla HOM05D005385 ORTHO05D006768 2.0e-22 111.7 358 29.9
RcHm_v2.0_Chr2g0158651 Rosa chinensis HOM05D005385 ORTHO05D006768 7.8e-22 109.8 339 29.2
FAN02G3845 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.7e-21 108.6 354 27.4
Lj8A127T46 Lonicera japonica HOM05D005385 ORTHO05D006768 1.1e-20 105.9 361 29.1
CSS0010990 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 1.9e-20 105.1 358 31.6
Rhsim06G0165400 Rhododendron simsii HOM05D005385 ORTHO05D006768 4.3e-20 104.0 342 29.8
Thecc.01G177600 Theobroma cacao HOM05D005385 ORTHO05D006768 4.3e-20 104.0 764 22.9
TWI36G1417 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 4.3e-20 104.0 382 28.0
FAN14G3333 Fragaria x ananassa HOM05D005385 ORTHO05D006768 5.6e-20 103.6 354 27.1
COL.COLO4_21830 Corchorus olitorius HOM05D005385 ORTHO05D006768 7.3e-20 103.2 758 27.3
Medtr8g061890 Medicago truncatula HOM05D005385 ORTHO05D006768 7.3e-20 103.2 668 26.0
Dinv08748 Davidia involucrata HOM05D005385 ORTHO05D006768 9.5e-20 102.8 364 30.5
FvH4_6g42760 Fragaria vesca HOM05D005385 ORTHO05D006768 9.5e-20 102.8 354 27.1
Lalb_Chr10g0107231 Lupinus albus HOM05D005385 ORTHO05D006768 9.5e-20 102.8 659 28.5
FAN05G0986 Fragaria x ananassa HOM05D005385 ORTHO05D006768 1.2e-19 102.4 354 26.8
Psat4g129200 Pisum sativum HOM05D005385 ORTHO05D006768 2.1e-19 101.7 654 24.5
FAN09G2639 Fragaria x ananassa HOM05D005385 ORTHO05D006768 3.6e-19 100.9 351 27.4
vmacro12184 Vaccinium macrocarpon HOM05D005385 ORTHO05D006768 1.8e-18 98.6 340 29.1
CiPaw.03G158000 Carya illinoinensis HOM05D005385 ORTHO05D006768 2.3e-18 98.2 286 26.9
Dinv39728 Davidia involucrata HOM05D005385 ORTHO05D006768 2.3e-18 98.2 357 28.0
Rhsim06G0165100 Rhododendron simsii HOM05D005385 ORTHO05D006768 4.4e-17 94.0 164 39.6
BcaC07g36863 Brassica carinata HOM05D005385 ORTHO05D006768 9.8e-17 92.8 78 69.2
Eucgr.K00777 Eucalyptus grandis HOM05D005385 ORTHO05D006768 1.7e-16 92.0 335 29.6
Cc05_g03620 Coffea canephora HOM05D005385 ORTHO05D006768 2.2e-16 91.7 365 29.3
HanXRQChr16g0506711 Helianthus annuus HOM05D005385 ORTHO05D006768 6.4e-16 90.1 391 29.2
Atru.chr6.3225 Acer truncatum HOM05D005385 ORTHO05D006768 8.3e-16 89.7 247 33.2
Ca_22840_v3 Cicer arietinum L. HOM05D005385 ORTHO05D006768 2.4e-15 88.2 655 26.1
Prupe.3G214000 Prunus persica HOM05D005385 ORTHO05D006768 2.4e-15 88.2 317 28.7
Glyma.08G294700 Glycine max HOM05D005385 ORTHO05D006768 4.1e-15 87.4 688 23.8
Gohir.A07G081700 Gossypium hirsutum HOM05D005385 ORTHO05D006768 5.4e-15 87.0 337 27.9
DCAR_021157 Daucus carota HOM05D005385 ORTHO05D006768 7.0e-15 86.7 163 35.6
TAR627G0869 Trochodendron aralioides HOM05D005385 ORTHO05D006768 2.0e-14 85.1 340 26.8
Lsat_1_v5_gn_7_93260 Lactuca sativa HOM05D005385 ORTHO05D006768 2.7e-14 84.7 378 28.6
Ciclev10014304m.g Citrus clementina HOM05D005385 ORTHO05D006768 7.8e-14 83.2 244 32.0
Glyma.18G128300 Glycine max HOM05D005385 ORTHO05D006768 7.8e-14 83.2 645 24.2
PGR142G3338 Punica granatum HOM05D005385 ORTHO05D006768 2.3e-13 81.6 138 38.4
TWI75G1493 Tripterygium wilfordii HOM05D005385 ORTHO05D006768 3.9e-13 80.9 381 26.2
CSS0011006 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 5.0e-13 80.5 340 27.4
Gohir.D07G088200 Gossypium hirsutum HOM05D005385 ORTHO05D006768 8.6e-13 79.7 347 27.4
Manes.12G072400 Manihot esculenta HOM05D005385 ORTHO05D006768 1.5e-12 79.0 365 26.6
Gorai.001G094400 Gossypium raimondii HOM05D005385 ORTHO05D006768 3.3e-12 77.8 347 27.1
Lj4g0021844 Lotus japonicus HOM05D005385 ORTHO05D006768 7.3e-12 76.6 650 23.7
Actinidia09739 Actinidia chinensis HOM05D005385 ORTHO05D006768 9.5e-12 76.3 147 36.1
TPR.G29371 Trifolium pratense HOM05D005385 ORTHO05D006768 1.6e-11 75.5 656 22.1
CANSAT64G0851 Cannabis sativa HOM05D005385 ORTHO05D006768 2.1e-11 75.1 274 29.6
Duzib133G0609 Durio zibethinus HOM05D005385 ORTHO05D006768 2.1e-11 75.1 174 35.1
Migut.H01229 Erythranthe guttata HOM05D005385 ORTHO05D006768 2.8e-11 74.7 380 28.2
Nitab4.5_0008855g0010 Nicotiana tabacum HOM05D005385 ORTHO05D006768 4.7e-11 73.9 318 27.0
DCAR_021158 Daucus carota HOM05D005385 ORTHO05D006768 1.4e-10 72.4 163 31.9
VMungo0251G0036 Vigna mungo HOM05D005385 ORTHO05D006768 2.3e-10 71.6 668 22.2
GSVIVG01030472001 Vitis vinifera HOM05D005385 ORTHO05D006768 2.3e-10 71.6 357 24.1
CAN.G290.3 Capsicum annuum HOM05D005385 ORTHO05D006768 6.8e-10 70.1 364 26.4
MD17G1100100 Malus domestica HOM05D005385 ORTHO05D006768 6.8e-10 70.1 234 28.6
MSTRG.14146 Avicennia marina HOM05D005385 ORTHO05D006768 8.9e-10 69.7 366 27.0
PGSC0003DMG400001080 Solanum tuberosum HOM05D005385 ORTHO05D006768 1.2e-09 69.3 327 26.3
SGA_v2.0_scaffold159G37574 Striga asiatica HOM05D005385 ORTHO05D006768 1.2e-09 69.3 345 25.8
Phvul.003G071200 Phaseolus vulgaris HOM05D005385 ORTHO05D006768 2.0e-09 68.6 655 23.4
MD17G1100500 Malus domestica HOM05D005385 ORTHO05D006768 4.4e-09 67.4 195 31.8
Sed0009527 Sechium edule HOM05D005385 ORTHO05D006768 5.8e-09 67.0 341 24.6
Sopen07g025370 Solanum pennellii HOM05D005385 ORTHO05D006768 5.8e-09 67.0 367 25.3
CsaV3_2G034680 Cucumis sativus L. HOM05D005385 ORTHO05D006768 4.9e-08 63.9 340 24.4
Solyc07g049750.3 Solanum lycopersicum HOM05D005385 ORTHO05D006768 4.9e-08 63.9 367 24.3
Nitab4.5_0004549g0030 Nicotiana tabacum HOM05D005385 ORTHO05D006768 7.1e-07 60.1 128 32.8
Nitab4.5_0000130g0270 Nicotiana tabacum HOM05D005385 ORTHO05D006768 9.2e-07 59.7 375 24.5
Rhsim06G0164700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.7e-06 58.2 161 29.8
RhsimUnG0010700 Rhododendron simsii HOM05D005385 ORTHO05D006768 2.7e-06 58.2 161 29.8
Oeu036745.2 Olea europaea HOM05D005385 ORTHO05D006768 3.5e-06 57.8 248 29.4
BcaB04g17601 Brassica carinata HOM05D005385 ORTHO05D039913 4.6e-06 57.4 40 75.0
CSS0039058 Camellia sinensis var. sinensis HOM05D005385 ORTHO05D006768 4.6e-06 57.4 374 25.4
ECA236G2918 Erigeron canadensis HOM05D005385 ORTHO05D006768 7.8e-06 56.6 284 29.2


User provided reference genes

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