Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 6.4e-160 567.4 292 100.0
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 5.4e-159 564.3 292 99.3
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 1.0e-157 560.1 292 97.9
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 2.4e-154 548.9 292 95.5
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 7.6e-153 543.9 292 94.2
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 9.9e-153 543.5 292 95.2
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 7.1e-151 537.3 292 93.5
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 7.1e-151 537.3 292 93.5
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 2.1e-150 535.8 292 93.2
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 3.0e-149 531.9 292 92.8
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 7.1e-143 510.8 292 89.4
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 1.0e-133 480.3 294 82.3
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 5.7e-124 448.0 295 74.6
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 5.7e-124 448.0 295 74.6
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.1e-122 442.2 295 75.3
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 3.1e-122 442.2 295 75.6
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 4.1e-122 441.8 294 76.9
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 9.0e-122 440.7 296 74.0
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 2.0e-121 439.5 291 74.2
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 5.9e-121 438.0 295 74.2
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 7.7e-121 437.6 295 74.2
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 1.3e-120 436.8 294 73.8
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 1.7e-120 436.4 291 75.3
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 1.7e-120 436.4 296 75.0
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 2.2e-120 436.0 294 74.8
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 3.8e-120 435.3 295 74.9
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 3.8e-120 435.3 291 73.5
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.1e-119 433.7 295 73.9
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 7.2e-119 431.0 293 73.4
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 7.2e-119 431.0 292 71.9
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 7.2e-119 431.0 295 73.9
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.2e-118 430.3 295 72.9
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 1.2e-118 430.3 294 72.4
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 2.1e-118 429.5 294 73.5
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 6.1e-118 427.9 298 73.2
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 1.0e-117 427.2 295 72.5
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 2.3e-117 426.0 295 71.9
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 5.1e-117 424.9 294 71.4
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 5.1e-117 424.9 294 72.4
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 6.7e-117 424.5 294 73.1
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 1.1e-116 423.7 291 72.9
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 1.1e-116 423.7 294 72.4
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.1e-116 423.7 295 72.2
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 1.1e-116 423.7 294 71.4
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.1e-116 423.7 295 72.5
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 2.0e-116 422.9 294 72.4
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 2.6e-116 422.5 294 73.1
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.6e-116 422.5 295 71.5
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 2.6e-116 422.5 295 71.5
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 3.3e-116 422.2 296 72.0
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 4.3e-116 421.8 294 71.1
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 5.7e-116 421.4 295 70.2
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 7.4e-116 421.0 294 71.1
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 7.4e-116 421.0 294 72.1
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 1.7e-115 419.9 295 70.2
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 1.7e-115 419.9 294 71.1
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 2.2e-115 419.5 302 71.2
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 2.8e-115 419.1 295 71.5
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 3.7e-115 418.7 292 70.9
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 3.7e-115 418.7 296 71.3
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 4.8e-115 418.3 302 71.2
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 4.8e-115 418.3 296 70.9
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 1.1e-114 417.2 295 70.2
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 1.8e-114 416.4 293 72.0
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 3.1e-114 415.6 292 70.9
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 4.1e-114 415.2 295 70.8
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 6.9e-114 414.5 295 70.2
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.5e-113 413.3 295 69.5
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 2.6e-113 412.5 295 69.8
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 3.4e-113 412.1 295 69.8
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 4.5e-113 411.8 292 70.2
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.2e-112 409.5 295 68.8
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 3.8e-112 408.7 312 66.3
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 5.0e-112 408.3 295 70.5
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 6.5e-112 407.9 292 70.2
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 6.5e-112 407.9 295 68.8
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 8.5e-112 407.5 312 66.0
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 1.4e-111 406.8 296 68.9
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 1.4e-111 406.8 294 68.7
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 1.4e-111 406.8 289 70.6
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 2.5e-111 406.0 311 66.2
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 4.2e-111 405.2 289 71.6
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 7.2e-111 404.4 292 69.2
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 1.2e-110 403.7 339 62.2
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 1.2e-110 403.7 296 68.9
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 1.6e-110 403.3 296 69.3
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 2.7e-110 402.5 296 68.9
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 3.6e-110 402.1 295 68.5
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 4.7e-110 401.7 292 69.5
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 1.0e-109 400.6 294 66.7
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.0e-109 400.6 295 68.5
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 1.8e-109 399.8 295 67.8
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 2.3e-109 399.4 248 79.4
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 3.0e-109 399.1 297 67.0
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 3.0e-109 399.1 296 68.6
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 5.2e-109 398.3 282 69.9
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 5.2e-109 398.3 296 67.9
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 8.8e-109 397.5 295 67.8
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.5e-108 396.7 295 67.8
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 3.3e-108 395.6 282 70.2
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 9.7e-108 394.0 277 71.8
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 4.8e-107 391.7 294 67.7
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 4.8e-107 391.7 267 73.0
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 8.2e-107 391.0 297 65.7
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.8e-106 389.8 294 67.7
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 5.3e-106 388.3 288 68.4
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 1.0e-104 384.0 284 66.2
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 4.2e-103 378.6 293 66.6
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.1e-98 364.0 317 60.3
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 2.7e-89 332.8 294 61.2
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 6.5e-88 328.2 216 74.1
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 8.5e-88 327.8 287 54.7
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 3.6e-86 322.4 294 57.8
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 1.0e-85 320.9 290 54.5
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 1.4e-85 320.5 222 72.5
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 2.3e-85 319.7 216 72.2
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 2.6e-84 316.2 221 70.6
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 1.8e-82 310.1 288 53.8
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 5.4e-82 308.5 290 53.4
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 9.2e-82 307.8 262 58.0
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 2.0e-81 306.6 279 59.5
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 2.7e-81 306.2 223 69.1
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.3e-80 303.9 290 52.8
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 1.4e-77 293.9 295 53.2
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 1.3e-75 287.3 270 57.4
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 5.9e-73 278.5 214 64.0
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 3.7e-67 259.2 252 53.6
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 4.1e-66 255.8 252 56.3
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 1.2e-65 254.2 176 72.2
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 7.5e-60 235.0 223 57.4
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 2.4e-58 229.9 150 76.0
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 6.6e-56 221.9 202 56.4
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 5.8e-52 208.8 162 61.7
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 1.4e-50 204.1 143 64.3
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 1.0e-48 198.0 149 66.4
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 3.1e-45 186.4 135 67.4
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 1.2e-44 184.5 266 36.8
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 8.7e-40 168.3 181 52.5
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 2.4e-37 160.2 151 57.0
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 2.1e-33 147.1 105 68.6
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 6.0e-33 145.6 302 33.1
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 9.0e-29 131.7 99 60.6
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.5e-28 131.0 106 65.1
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-26 124.4 106 63.2
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 9.0e-21 105.1 273 26.0
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 5.8e-20 102.4 116 52.6
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 4.9e-19 99.4 66 75.8
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 3.2e-18 96.7 128 46.1
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 4.2e-18 96.3 91 60.4
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 6.0e-17 92.4 81 56.8
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 4.1e-13 79.7 113 43.4
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 1.5e-12 77.8 113 42.5
HanXRQChr04g0119531 Helianthus annuus HOM05D004415 ORTHO05D005198 8.7e-08 62.0 37 70.3
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 8.7e-08 62.0 44 65.9
GSVIVG01003362001 Vitis vinifera HOM05D004415 ORTHO05D005198 2.5e-07 60.5 51 58.8
VMungo0251G3417 Vigna mungo HOM05D004415 ORTHO05D005198 2.2e-06 57.4 32 78.1
SGA_v2.0_scaffold298G47630 Striga asiatica HOM05D004415 ORTHO05D005198 2.8e-06 57.0 60 50.0


User provided reference genes

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