Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G20350 Arabidopsis thaliana HOM05D003201 ORTHO05D008805 4.1e-107 391.3 188 100.0
AL7G33540 Arabidopsis lyrata HOM05D003201 ORTHO05D008805 2.6e-98 362.1 188 93.1
Carub.0007s2082 Capsella rubella HOM05D003201 ORTHO05D008805 3.3e-93 345.1 188 89.9
Thhalv10026088m.g Eutrema salsugineum HOM05D003201 ORTHO05D008805 2.2e-89 332.4 193 86.0
Sp7g18690 Schrenkiella parvula HOM05D003201 ORTHO05D008805 2.2e-89 332.4 193 84.5
CARHR227170 Cardamine hirsuta HOM05D003201 ORTHO05D008805 1.0e-86 323.6 192 83.3
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 2.6e-82 308.9 193 82.4
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 3.5e-82 308.5 192 82.8
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 6.5e-81 304.3 192 81.2
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 1.0e-78 297.0 198 77.3
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 8.2e-76 287.3 197 76.6
THA.LOC104806236 Tarenaya hassleriana HOM05D003201 ORTHO05D008805 1.6e-74 283.1 200 74.0
BcaC09g51346 Brassica carinata HOM05D003201 ORTHO05D008805 6.3e-68 261.2 163 81.6
CiPaw.03G255400 Carya illinoinensis HOM05D003201 ORTHO05D008805 8.8e-62 240.7 205 62.4
Glyma.16G207100 Glycine max HOM05D003201 ORTHO05D008805 6.3e-60 234.6 206 60.2
TWI34G1882 Tripterygium wilfordii HOM05D003201 ORTHO05D008805 6.3e-60 234.6 203 61.1
Glyma.09G156400 Glycine max HOM05D003201 ORTHO05D008805 1.8e-59 233.0 206 60.2
Cfa002302 Carpinus fangiana HOM05D003201 ORTHO05D008805 2.4e-59 232.6 208 58.7
Psat1g112800 Pisum sativum HOM05D003201 ORTHO05D008805 2.4e-59 232.6 204 59.8
Lj2g0011105 Lotus japonicus HOM05D003201 ORTHO05D008805 9.2e-59 230.7 205 59.0
Sabra13G0129200 Salix brachista HOM05D003201 ORTHO05D008805 9.2e-59 230.7 208 60.1
QL04p043008 Quercus lobata HOM05D003201 ORTHO05D008805 1.2e-58 230.3 204 59.8
VMungo0464G1483 Vigna mungo HOM05D003201 ORTHO05D008805 1.6e-58 229.9 202 59.9
Thecc.05G124600 Theobroma cacao HOM05D003201 ORTHO05D008805 2.0e-58 229.6 205 60.5
Lalb_Chr01g0008671 Lupinus albus HOM05D003201 ORTHO05D008805 2.7e-58 229.2 206 60.2
TPR.G5800 Trifolium pratense HOM05D003201 ORTHO05D008805 4.5e-58 228.4 206 58.7
HanXRQChr17g0555621 Helianthus annuus HOM05D003201 ORTHO05D008805 1.0e-57 227.3 190 61.1
Aqoxy5G03624 Aquilegia oxysepala HOM05D003201 ORTHO05D008805 2.3e-57 226.1 208 58.2
Phvul.004G131600 Phaseolus vulgaris HOM05D003201 ORTHO05D008805 2.3e-57 226.1 202 59.4
CANSAT35G1729 Cannabis sativa HOM05D003201 ORTHO05D008805 2.9e-57 225.7 188 63.3
FvH4_3g46100 Fragaria vesca HOM05D003201 ORTHO05D008805 2.9e-57 225.7 209 60.3
Potri.013G161600 Populus trichocarpa HOM05D003201 ORTHO05D008805 3.8e-57 225.3 208 58.7
Gohir.A09G117900 Gossypium hirsutum HOM05D003201 ORTHO05D008805 8.6e-57 224.2 204 59.3
Gohir.D09G114700 Gossypium hirsutum HOM05D003201 ORTHO05D008805 8.6e-57 224.2 204 59.3
ECA248G3933 Erigeron canadensis HOM05D003201 ORTHO05D008805 1.5e-56 223.4 192 58.3
PSO339G6265 Papaver somniferum HOM05D003201 ORTHO05D008805 1.5e-56 223.4 210 57.1
Prupe.6G000300 Prunus persica HOM05D003201 ORTHO05D008805 2.5e-56 222.6 212 57.5
Medtr6g059320 Medicago truncatula HOM05D003201 ORTHO05D008805 3.3e-56 222.2 206 57.3
RcHm_v2.0_Chr5g0084171 Rosa chinensis HOM05D003201 ORTHO05D008805 4.3e-56 221.9 209 58.9
vmacro04280 Vaccinium macrocarpon HOM05D003201 ORTHO05D008805 5.6e-56 221.5 209 57.4
MBI13_g39202_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 7.3e-56 221.1 214 57.0
PSO384G0221 Papaver somniferum HOM05D003201 ORTHO05D008805 9.5e-56 220.7 210 56.7
GSVIVG01034815001 Vitis vinifera HOM05D003201 ORTHO05D008805 9.5e-56 220.7 205 59.0
MELO3C024592.2 Cucumis melo HOM05D003201 ORTHO05D008805 2.1e-55 219.5 191 59.2
CSS0031904 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008805 3.6e-55 218.8 208 56.7
ClCG01G015060 Citrullus lanatus HOM05D003201 ORTHO05D008805 3.6e-55 218.8 190 59.5
Dinv15525 Davidia involucrata HOM05D003201 ORTHO05D008805 6.1e-55 218.0 209 58.4
CsaV3_6G041170 Cucumis sativus L. HOM05D003201 ORTHO05D008805 8.0e-55 217.6 191 59.7
Eucgr.J01718 Eucalyptus grandis HOM05D003201 ORTHO05D008805 8.0e-55 217.6 204 56.9
TAR623G0449 Trochodendron aralioides HOM05D003201 ORTHO05D008805 1.0e-54 217.2 208 58.7
HPP92_021155 Vanilla planifolia HOM05D003201 ORTHO05D008805 2.3e-54 216.1 205 57.1
AUR62000916 Chenopodium quinoa HOM05D003201 ORTHO05D008805 3.0e-54 215.7 202 57.4
DCAR_028397 Daucus carota HOM05D003201 ORTHO05D008805 5.2e-54 214.9 208 56.7
Cc01_g05060 Coffea canephora HOM05D003201 ORTHO05D008805 6.8e-54 214.5 210 56.7
CAN.G431.2 Capsicum annuum HOM05D003201 ORTHO05D008805 1.2e-53 213.8 204 57.4
Migut.N00525 Erythranthe guttata HOM05D003201 ORTHO05D008805 1.5e-53 213.4 196 57.1
MD11G1000200 Malus domestica HOM05D003201 ORTHO05D008805 2.0e-53 213.0 209 56.9
Peaxi162Scf01181g00210 Petunia axillaris HOM05D003201 ORTHO05D008805 2.0e-53 213.0 219 53.9
Hma1.2p1_1133F.1_g260360 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 4.4e-53 211.8 213 54.5
Hma1.2p1_1133F.1_g260370 Hydrangea macrophylla HOM05D003201 ORTHO05D008805 4.4e-53 211.8 213 54.5
FAN11G2508 Fragaria x ananassa HOM05D003201 ORTHO05D008805 9.8e-53 210.7 198 60.1
Haze_24508 Corylus avellana HOM05D003201 ORTHO05D008805 1.3e-52 210.3 197 57.9
Actinidia16221 Actinidia chinensis HOM05D003201 ORTHO05D008805 3.7e-52 208.8 204 55.4
ATR0068G091 Amborella trichopoda HOM05D003201 ORTHO05D008805 1.1e-51 207.2 200 55.5
Solyc01g057570.3 Solanum lycopersicum HOM05D003201 ORTHO05D008805 1.1e-51 207.2 204 54.9
Sopen01g022430 Solanum pennellii HOM05D003201 ORTHO05D008805 1.1e-51 207.2 204 53.9
AUR62005054 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.4e-51 206.8 196 56.1
arahy.Tifrunner.gnm1.ann1.F1EX5J Arachis hypogaea HOM05D003201 ORTHO05D008805 9.2e-51 204.1 156 66.7
MSTRG.12815 Avicennia marina HOM05D003201 ORTHO05D008805 2.0e-50 203.0 207 52.2
arahy.Tifrunner.gnm1.ann1.75P5EB Arachis hypogaea HOM05D003201 ORTHO05D008805 5.9e-50 201.4 155 65.8
CDE02G2127 Ceratophyllum demersum HOM05D003201 ORTHO05D008805 3.9e-49 198.7 213 50.2
FAN25G0659 Fragaria x ananassa HOM05D003201 ORTHO05D008805 4.3e-48 195.3 190 57.9
PGR119G1272 Punica granatum HOM05D003201 ORTHO05D008805 4.3e-48 195.3 191 57.6
EL10Ac4g09260 Beta vulgaris HOM05D003201 ORTHO05D008805 9.5e-48 194.1 239 47.3
unitig_0.g1143 Utricularia gibba HOM05D003201 ORTHO05D008805 9.5e-48 194.1 188 54.3
Manes.18G121700 Manihot esculenta HOM05D003201 ORTHO05D008805 1.1e-46 190.7 193 57.0
Sc18g0002730 Simmondsia chinensis HOM05D003201 ORTHO05D008805 3.1e-46 189.1 146 67.8
Zm00001eb047810 Zea mays HOM05D003201 ORTHO05D008805 1.5e-45 186.8 221 48.9
Sed0008662 Sechium edule HOM05D003201 ORTHO05D008805 2.6e-45 186.0 182 53.8
Cpa.g.sc30.50 Carica papaya HOM05D003201 ORTHO05D008805 1.7e-44 183.3 184 57.1
SGA_v2.0_scaffold6G03334 Striga asiatica HOM05D003201 ORTHO05D008805 1.9e-43 179.9 223 48.4
Atru.chr2.209 Acer truncatum HOM05D003201 ORTHO05D008805 2.4e-43 179.5 133 69.2
Ciclev10029320m.g Citrus clementina HOM05D003201 ORTHO05D008805 5.4e-43 178.3 131 67.2
Pp3c2_18510 Physcomitrium patens HOM05D003201 ORTHO05D008805 5.4e-43 178.3 207 46.4
Sopen01g019970 Solanum pennellii HOM05D003201 ORTHO05D008805 9.2e-43 177.6 204 51.0
Mapoly0007s0017 Marchantia polymorpha HOM05D003201 ORTHO05D008805 1.7e-41 173.3 203 45.3
SEGI_31075 Sequoiadendron giganteum HOM05D003201 ORTHO05D008805 1.7e-41 173.3 226 46.9
Lsat_1_v5_gn_1_71340 Lactuca sativa HOM05D003201 ORTHO05D008805 2.3e-41 172.9 140 62.1
Os10g0420000 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008805 2.3e-41 172.9 203 50.7
Nitab4.5_0000075g0050 Nicotiana tabacum HOM05D003201 ORTHO05D008805 3.0e-41 172.6 217 47.9
Gorai.006G132500 Gossypium raimondii HOM05D003201 ORTHO05D008805 1.5e-40 170.2 133 66.2
SMO147G0005 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 2.1e-39 166.4 190 50.0
SMO132G0004 Selaginella moellendorffii HOM05D003201 ORTHO05D008805 6.2e-39 164.9 188 49.5
MBI13_g36948_MAGBIO Magnolia biondii HOM05D003201 ORTHO05D008805 1.8e-38 163.3 154 57.1
SalBow3G4219 Salvia bowleyana HOM05D003201 ORTHO05D008805 7.5e-37 157.9 135 60.0
FAN21G2623 Fragaria x ananassa HOM05D003201 ORTHO05D008805 1.0e-33 147.5 161 54.7
Ca_25246_v3 Cicer arietinum L. HOM05D003201 ORTHO05D008805 3.9e-33 145.6 156 53.8
Nitab4.5_0005125g0010 Nicotiana tabacum HOM05D003201 ORTHO05D008805 1.1e-32 144.1 131 60.3
Lj1A555G38 Lonicera japonica HOM05D003201 ORTHO05D008805 3.1e-30 136.0 162 47.5
FAN16G0934 Fragaria x ananassa HOM05D000104 ORTHO05D004363 4.0e-30 135.6 180 47.2
Hund07019 Selenicereus undatus HOM05D003201 ORTHO05D008805 4.0e-30 135.6 156 52.6
MCO03G055 Micromonas commoda HOM05D003201 ORTHO05D008805 8.9e-30 134.4 188 44.7
AUR62004843 Chenopodium quinoa HOM05D003201 ORTHO05D008805 1.2e-29 134.0 77 76.6
PGSC0003DMG400026601 Solanum tuberosum HOM05D003201 ORTHO05D008805 8.4e-28 127.9 156 47.4
Duzib093G2193 Durio zibethinus HOM05D003201 ORTHO05D008805 2.1e-26 123.2 140 51.4
COL.COLO4_24749 Corchorus olitorius HOM05D003201 ORTHO05D008805 4.6e-26 122.1 153 46.4
Rhsim13G0235500 Rhododendron simsii HOM05D003201 ORTHO05D008805 1.2e-23 114.0 146 48.6
MCO08G131 Micromonas commoda HOM05D003201 ORTHO05D008805 3.2e-11 72.8 124 39.5
Cfa026017 Carpinus fangiana HOM05D003201 ORTHO05D124792 4.2e-11 72.4 131 37.4
PRCOL_00004726 Prasinoderma coloniale HOM05D003201 ORTHO05D008805 5.4e-11 72.0 155 32.3
CBR_g45550 Chara braunii HOM05D000019 ORTHO05D000353 2.3e-09 66.6 53 58.5
Cre14.g632791 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008805 2.3e-09 66.6 40 70.0
Psat2g014480 Pisum sativum HOM05D006806 ORTHO05D008448 5.3e-06 55.5 135 31.1


User provided reference genes

Program Settings