Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G19440 Arabidopsis thaliana HOM05D007551 ORTHO05D009424 5.9e-166 589.0 302 100.0
AL7G34670 Arabidopsis lyrata HOM05D007551 ORTHO05D009424 6.8e-154 548.9 305 93.8
Carub.0007s2177 Capsella rubella HOM05D007551 ORTHO05D009424 2.0e-145 520.8 305 89.5
Sp7g18060 Schrenkiella parvula HOM05D007551 ORTHO05D009424 1.9e-135 487.6 304 83.6
Thhalv10024401m.g Eutrema salsugineum HOM05D007551 ORTHO05D009424 1.2e-131 474.9 305 82.0
Aa31LG6G2050 Aethionema arabicum HOM05D007551 ORTHO05D009424 1.3e-107 395.2 284 75.0
BcaB03g11619 Brassica carinata HOM05D007551 ORTHO05D009424 1.6e-107 394.8 304 73.0
CARHR226230 Cardamine hirsuta HOM05D007551 ORTHO05D009424 3.1e-90 337.4 282 67.7
BolC3t20473H Brassica oleracea HOM05D007551 ORTHO05D009424 1.8e-77 295.0 278 59.7
C03p81990 Brassica napus HOM05D007551 ORTHO05D009424 5.5e-71 273.5 278 56.1
Prupe.3G018200 Prunus persica HOM05D007551 ORTHO05D009424 9.4e-63 246.1 291 50.2
CiPaw.12G053700 Carya illinoinensis HOM05D007551 ORTHO05D009424 4.7e-62 243.8 282 48.9
Ciclev10000274m.g Citrus clementina HOM05D007551 ORTHO05D009424 1.5e-60 238.8 231 55.8
Atru.chr6.2125 Acer truncatum HOM05D007551 ORTHO05D009424 7.4e-60 236.5 230 56.5
MD06G1022200 Malus domestica HOM05D007551 ORTHO05D009424 9.7e-60 236.1 283 49.5
Dinv37453 Davidia involucrata HOM05D007551 ORTHO05D009424 3.1e-58 231.1 287 47.7
FvH4_5g24430 Fragaria vesca HOM05D007551 ORTHO05D009424 1.0e-56 226.1 221 53.4
Rhsim04G0146500 Rhododendron simsii HOM05D007551 ORTHO05D009424 1.0e-56 226.1 239 50.6
FAN13G0867 Fragaria x ananassa HOM05D007551 ORTHO05D009424 1.3e-56 225.7 221 52.9
TAR633G1897 Trochodendron aralioides HOM05D007551 ORTHO05D009424 2.9e-56 224.6 230 50.4
Cfa012637 Carpinus fangiana HOM05D007551 ORTHO05D009424 3.8e-56 224.2 235 51.1
Sed0007434 Sechium edule HOM05D007551 ORTHO05D009424 5.0e-56 223.8 227 52.9
GSVIVG01036918001 Vitis vinifera HOM05D007551 ORTHO05D009424 8.5e-56 223.0 238 51.7
ClCG07G011220 Citrullus lanatus HOM05D007551 ORTHO05D009424 4.2e-55 220.7 222 52.3
MELO3C016242.2 Cucumis melo HOM05D007551 ORTHO05D009424 4.2e-55 220.7 230 51.7
RcHm_v2.0_Chr7g0214821 Rosa chinensis HOM05D007551 ORTHO05D009424 5.5e-55 220.3 221 52.0
Hma1.2p1_0294F.1_g116420 Hydrangea macrophylla HOM05D007551 ORTHO05D009424 3.6e-54 217.6 236 48.7
Thecc.03G322800 Theobroma cacao HOM05D007551 ORTHO05D009424 8.0e-54 216.5 223 53.4
Nn6g33703 Nelumbo nucifera HOM05D007551 ORTHO05D009424 1.0e-53 216.1 282 46.1
Sed0011000 Sechium edule HOM05D007551 ORTHO05D009424 1.8e-53 215.3 239 48.1
FvH4_4g10440 Fragaria vesca HOM05D007551 ORTHO05D009424 6.8e-53 213.4 267 47.2
Lalb_Chr09g0334421 Lupinus albus HOM05D007551 ORTHO05D009424 6.8e-53 213.4 222 52.3
QL11p054679 Quercus lobata HOM05D007551 ORTHO05D009424 8.8e-53 213.0 292 46.9
CsaV3_4G007030 Cucumis sativus L. HOM05D007551 ORTHO05D009424 1.2e-52 212.6 230 50.4
FvH4_4g10410 Fragaria vesca HOM05D007551 ORTHO05D009424 2.6e-52 211.5 267 46.8
RcHm_v2.0_Chr4g0405931 Rosa chinensis HOM05D007551 ORTHO05D009424 4.4e-52 210.7 266 47.0
COL.COLO4_16723 Corchorus olitorius HOM05D007551 ORTHO05D009424 5.7e-52 210.3 282 45.7
TAR362G0203 Trochodendron aralioides HOM05D007551 ORTHO05D009424 7.5e-52 209.9 278 44.6
EL10Ac5g11872 Beta vulgaris HOM05D007551 ORTHO05D009424 1.7e-51 208.8 278 44.2
Haze_08024 Corylus avellana HOM05D007551 ORTHO05D009424 1.7e-51 208.8 201 53.7
Nn1g00676 Nelumbo nucifera HOM05D007551 ORTHO05D009424 3.7e-51 207.6 230 48.3
Ah.12g056170 Amaranthus hybridus HOM05D000351 ORTHO05D009424 4.8e-51 207.2 281 45.2
Lj4g0019089 Lotus japonicus HOM05D007551 ORTHO05D009424 4.8e-51 207.2 223 52.0
Eucgr.E01036 Eucalyptus grandis HOM05D007551 ORTHO05D009424 8.3e-51 206.5 230 48.3
Solyc11g005940.3 Solanum lycopersicum HOM05D007551 ORTHO05D009424 9.1e-50 203.0 236 47.9
Nitab4.5_0002667g0100 Nicotiana tabacum HOM05D007551 ORTHO05D009424 1.2e-49 202.6 286 44.4
Sopen11g001880 Solanum pennellii HOM05D007551 ORTHO05D009424 1.2e-49 202.6 243 47.3
Lsat_1_v5_gn_6_75081 Lactuca sativa HOM05D007551 ORTHO05D009424 2.7e-49 201.4 277 43.7
TWI60G1073 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 3.5e-49 201.1 286 44.4
VMungo0251G2062 Vigna mungo HOM05D007551 ORTHO05D009424 3.5e-49 201.1 291 43.6
TWI34G0706 Tripterygium wilfordii HOM05D007551 ORTHO05D009424 7.7e-49 199.9 250 47.6
Nitab4.5_0000856g0020 Nicotiana tabacum HOM05D007551 ORTHO05D009424 1.7e-48 198.7 286 44.4
Sc07g0008330 Simmondsia chinensis HOM05D007551 ORTHO05D009424 1.7e-48 198.7 223 46.2
PGSC0003DMG402028683 Solanum tuberosum HOM05D007551 ORTHO05D009424 5.0e-48 197.2 236 47.0
Peaxi162Scf00619g00022 Petunia axillaris HOM05D007551 ORTHO05D009424 6.5e-48 196.8 266 44.7
PGR042G1889 Punica granatum HOM05D007551 ORTHO05D009424 8.5e-48 196.4 239 44.8
CAN.G652.9 Capsicum annuum HOM05D007551 ORTHO05D009424 1.1e-47 196.1 237 47.3
Phvul.003G277400 Phaseolus vulgaris HOM05D007551 ORTHO05D009424 9.4e-47 193.0 285 42.8
Cc00_g20060 Coffea canephora HOM05D007551 ORTHO05D009424 1.2e-46 192.6 247 45.3
Glyma.16G058700 Glycine max HOM05D007551 ORTHO05D009424 2.3e-45 188.3 285 40.4
Gorai.N026600 Gossypium raimondii HOM05D007551 ORTHO05D009424 1.5e-44 185.7 230 46.1
Gohir.A12G200366 Gossypium hirsutum HOM05D007551 ORTHO05D009424 3.4e-44 184.5 286 42.0
Migut.E01387 Erythranthe guttata HOM05D007551 ORTHO05D009424 2.2e-43 181.8 241 44.4
Oeu040609.1 Olea europaea HOM05D007551 ORTHO05D009424 2.2e-43 181.8 229 47.6
Oeu029773.2 Olea europaea HOM05D007551 ORTHO05D009424 9.1e-42 176.4 235 46.0
MSTRG.1750 Avicennia marina HOM05D007551 ORTHO05D009424 2.0e-41 175.3 235 45.1
PSO210G5788 Papaver somniferum HOM05D007551 ORTHO05D009424 3.5e-41 174.5 237 43.0
Gohir.D12G203200 Gossypium hirsutum HOM05D007551 ORTHO05D009424 4.5e-41 174.1 286 40.2
PSO210G4217 Papaver somniferum HOM05D007551 ORTHO05D009424 5.9e-41 173.7 243 42.0
SalBow1G3247 Salvia bowleyana HOM05D007551 ORTHO05D009424 1.0e-40 172.9 226 45.1
SalBow8G4006 Salvia bowleyana HOM05D007551 ORTHO05D009424 1.0e-40 172.9 226 45.1
Potri.003G105700 Populus trichocarpa HOM05D007551 ORTHO05D009424 2.9e-40 171.4 254 42.5
ECA240G1023 Erigeron canadensis HOM05D000046 ORTHO05D000457 6.6e-40 170.2 204 47.1
MBI13_g36729_MAGBIO Magnolia biondii HOM05D007551 ORTHO05D009424 6.6e-40 170.2 228 42.5
RcHm_v2.0_Chr7g0219861 Rosa chinensis HOM05D007551 ORTHO05D009424 2.5e-39 168.3 294 38.1
Manes.17G006200 Manihot esculenta HOM05D007551 ORTHO05D009424 7.2e-39 166.8 242 45.0
Sabra03G0072700 Salix brachista HOM05D007551 ORTHO05D009424 8.0e-38 163.3 250 43.2
SGA_v2.0_scaffold121G33050 Striga asiatica HOM05D007551 ORTHO05D009424 1.4e-37 162.5 226 43.4
AUR62044750 Chenopodium quinoa HOM05D007551 ORTHO05D009424 8.9e-37 159.8 175 46.9
Medtr8g071970 Medicago truncatula HOM05D007551 ORTHO05D009424 5.9e-33 147.1 205 43.9
Cpa.g.c44844 Carica papaya HOM05D007551 ORTHO05D009424 5.0e-32 144.1 163 52.1
TPR.G16813 Trifolium pratense HOM05D007551 ORTHO05D009424 8.6e-32 143.3 196 44.9
CSS0048505 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 1.2e-30 139.4 124 53.2
CSS0008559 Camellia sinensis var. sinensis HOM05D007551 ORTHO05D009424 3.6e-30 137.9 124 52.4
Aqoxy2G03897 Aquilegia oxysepala HOM05D007551 ORTHO05D009424 2.3e-29 135.2 177 42.4
Psat4g109680 Pisum sativum HOM05D007551 ORTHO05D009424 4.4e-28 131.0 222 39.2
Cpa.g.sc3.432 Carica papaya HOM05D007551 ORTHO05D009424 9.8e-28 129.8 114 54.4
FAN04G0939 Fragaria x ananassa HOM05D007551 ORTHO05D009424 3.7e-27 127.9 221 36.7
Lalb_Chr05g0229381 Lupinus albus HOM05D007551 ORTHO05D009424 3.5e-25 121.3 99 58.6
HPP92_013860 Vanilla planifolia HOM05D007551 ORTHO05D009424 7.8e-25 120.2 281 31.7
Lj8C372G5 Lonicera japonica HOM05D007551 ORTHO05D009424 1.7e-24 119.0 97 54.6
Oeu044967.1 Olea europaea HOM05D007551 ORTHO05D009424 1.9e-23 115.5 97 53.6
MD16G1287400 Malus domestica HOM05D007551 ORTHO05D009424 1.1e-18 99.8 70 65.7
Cc10_g03430 Coffea canephora HOM05D007639 ORTHO05D009509 1.1e-13 83.2 283 28.3
SEGI_02979 Sequoiadendron giganteum HOM05D007551 ORTHO05D006600 1.4e-13 82.8 218 27.5
Cc00_g12250 Coffea canephora HOM05D005764 ORTHO05D006600 2.6e-12 78.6 276 26.4
ECA234G3464 Erigeron canadensis HOM05D007639 ORTHO05D009509 4.4e-12 77.8 195 30.8
MBI02_g38361_MAGBIO Magnolia biondii HOM05D007426 ORTHO05D009167 4.4e-12 77.8 187 31.6
SalBow8G0178 Salvia bowleyana HOM05D007551 ORTHO05D009424 4.4e-12 77.8 72 51.4
SEGI_04297 Sequoiadendron giganteum HOM05D007212 ORTHO05D009094 2.9e-11 75.1 188 30.9
FAN17G3133 Fragaria x ananassa HOM05D007551 ORTHO05D009424 8.3e-11 73.6 114 36.0
Atru.BG.247.p Acer truncatum HOM05D007639 ORTHO05D009509 1.1e-10 73.2 185 28.1
PGSC0003DMG400014245 Solanum tuberosum HOM05D005764 ORTHO05D006600 1.9e-10 72.4 204 27.5
BcaB03g12921 Brassica carinata HOM05D007639 ORTHO05D009509 3.2e-10 71.6 188 29.8
TAR362G1049 Trochodendron aralioides HOM05D005764 ORTHO05D006600 3.2e-10 71.6 181 30.9
SEGI_12196 Sequoiadendron giganteum HOM05D006931 ORTHO05D008782 5.4e-10 70.9 181 29.3
ATR0626G221 Amborella trichopoda HOM05D007551 ORTHO05D009424 1.2e-09 69.7 180 30.6
CAN.G843.18 Capsicum annuum HOM05D005764 ORTHO05D006600 1.2e-09 69.7 185 26.5
Solyc03g118280.1 Solanum lycopersicum HOM05D005764 ORTHO05D006600 1.2e-09 69.7 187 28.3
Sopen03g037190 Solanum pennellii HOM05D005764 ORTHO05D006600 1.6e-09 69.3 187 27.8
MSTRG.1303 Avicennia marina HOM05D007639 ORTHO05D009509 2.1e-09 68.9 187 29.9
Nitab4.5_0000663g0160 Nicotiana tabacum HOM05D005764 ORTHO05D006600 2.7e-09 68.6 254 24.4
HPP92_013845 Vanilla planifolia HOM05D007551 ORTHO05D009424 3.5e-09 68.2 98 37.8
DCAR_021406 Daucus carota HOM05D005764 ORTHO05D006600 4.6e-09 67.8 186 26.9
HanXRQChr17g0557061 Helianthus annuus HOM05D007639 ORTHO05D009509 4.6e-09 67.8 207 27.1
Dinv13731 Davidia involucrata HOM05D005764 ORTHO05D006600 6.0e-09 67.4 185 28.1
Glyma.14G156100 Glycine max HOM05D007426 ORTHO05D009167 1.0e-08 66.6 190 28.9
Ca_22472_v3 Cicer arietinum L. HOM05D007551 ORTHO05D009424 2.3e-08 65.5 94 41.5
SHI25578 Sapria himalayana HOM05D007639 ORTHO05D009509 2.3e-08 65.5 252 26.2
Sopen05g004400 Solanum pennellii HOM05D007426 ORTHO05D009167 3.0e-08 65.1 190 25.3
CSS0006507 Camellia sinensis var. sinensis HOM05D007426 ORTHO05D009167 3.9e-08 64.7 207 28.0
Nn7g38163 Nelumbo nucifera HOM05D005764 ORTHO05D006600 5.1e-08 64.3 181 27.6
DCAR_023623 Daucus carota HOM05D007426 ORTHO05D009167 6.6e-08 63.9 186 26.3
PGSC0003DMG402030517 Solanum tuberosum HOM05D007426 ORTHO05D009167 6.6e-08 63.9 187 25.1
BraA01t01197Z Brassica rapa HOM05D007956 ORTHO05D010152 1.1e-07 63.2 225 28.0
Nitab4.5_0008892g0030 Nicotiana tabacum HOM05D005764 ORTHO05D006600 1.1e-07 63.2 264 23.1
SalBow7G2732 Salvia bowleyana HOM05D005764 ORTHO05D006600 1.1e-07 63.2 203 25.1
HPP92_023011 Vanilla planifolia HOM05D007426 ORTHO05D009167 1.1e-07 63.2 185 29.7
C01p15110 Brassica napus HOM05D007956 ORTHO05D010152 1.5e-07 62.8 237 27.8
BolC1t01460H Brassica oleracea HOM05D007956 ORTHO05D010152 1.5e-07 62.8 237 27.8
Glyma.13G034900 Glycine max HOM05D007426 ORTHO05D009167 1.5e-07 62.8 189 29.6
Lsat_1_v5_gn_6_101541 Lactuca sativa HOM05D007390 ORTHO05D009114 1.5e-07 62.8 166 30.7
PGSC0003DMG400002071 Solanum tuberosum HOM05D007956 ORTHO05D010152 1.5e-07 62.8 186 25.8
vmacro03705 Vaccinium macrocarpon HOM05D007956 ORTHO05D010152 1.9e-07 62.4 224 26.3
ECA246G4229 Erigeron canadensis HOM05D000587 ORTHO05D009114 2.5e-07 62.0 161 29.8
Solyc05g008560.1 Solanum lycopersicum HOM05D007426 ORTHO05D009167 2.5e-07 62.0 190 24.7
AL7G32950 Arabidopsis lyrata HOM05D007956 ORTHO05D010152 3.3e-07 61.6 228 27.2
Gohir.D02G172600 Gossypium hirsutum HOM05D007426 ORTHO05D009167 3.3e-07 61.6 182 26.9
TPR.G8243 Trifolium pratense HOM05D007291 ORTHO05D009038 3.3e-07 61.6 194 25.8
Aqoxy1G00124 Aquilegia oxysepala HOM05D004824 ORTHO05D003903 4.3e-07 61.2 192 24.5
SalBow7G4426 Salvia bowleyana HOM05D007639 ORTHO05D009509 5.6e-07 60.8 188 28.2
MD16G1034800 Malus domestica HOM05D007426 ORTHO05D009167 7.3e-07 60.5 262 23.3
BcaC09g51250 Brassica carinata HOM05D007956 ORTHO05D010152 9.6e-07 60.1 237 27.4
COL.COLO4_05553 Corchorus olitorius HOM05D004265 ORTHO05D005175 9.6e-07 60.1 180 26.1
MD00G1180200 Malus domestica HOM05D007956 ORTHO05D010152 9.6e-07 60.1 231 26.0
SGA_v2.0_scaffold24G10272 Striga asiatica HOM05D007639 ORTHO05D009509 9.6e-07 60.1 188 29.8
TWI14G0891 Tripterygium wilfordii HOM05D005764 ORTHO05D006600 9.6e-07 60.1 185 28.1
A01p12520 Brassica napus HOM05D007956 ORTHO05D010152 1.2e-06 59.7 223 28.3
CsaV3_2G007050 Cucumis sativus L. HOM05D006888 ORTHO05D008371 1.2e-06 59.7 274 24.1
CANSAT56G3111 Cannabis sativa HOM05D003900 ORTHO05D005009 1.6e-06 59.3 89 37.1
CARHR227750 Cardamine hirsuta HOM05D007956 ORTHO05D010152 1.6e-06 59.3 228 28.5
SalBow7G0144 Salvia bowleyana HOM05D007639 ORTHO05D009509 1.6e-06 59.3 188 27.7
Lj1g0027273 Lotus japonicus HOM05D008470 ORTHO05D010644 2.1e-06 58.9 129 37.2
Os07g0300200 Oryza sativa ssp. japonica HOM05D005764 ORTHO05D006600 2.1e-06 58.9 189 28.0
Solyc02g080170.1 Solanum lycopersicum HOM05D007956 ORTHO05D010152 2.1e-06 58.9 183 25.7
CSS0040489 Camellia sinensis var. sinensis HOM05D005764 ORTHO05D006600 2.8e-06 58.5 180 26.7
CiPaw.01G118600 Carya illinoinensis HOM05D007291 ORTHO05D009038 2.8e-06 58.5 219 24.7
Haze_07107 Corylus avellana HOM05D005764 ORTHO05D006600 2.8e-06 58.5 172 27.9
Thecc.01G192500 Theobroma cacao HOM05D006931 ORTHO05D008782 2.8e-06 58.5 215 26.0
VMungo1215G1392 Vigna mungo HOM05D007426 ORTHO05D009167 2.8e-06 58.5 185 26.5
Aqoxy1G00452 Aquilegia oxysepala HOM05D007455 ORTHO05D009431 3.6e-06 58.2 291 25.8
C08p19350 Brassica napus HOM05D007639 ORTHO05D009509 3.6e-06 58.2 187 26.2
Gohir.A03G149700 Gossypium hirsutum HOM05D007426 ORTHO05D009167 3.6e-06 58.2 179 26.8
Phvul.003G029100 Phaseolus vulgaris HOM05D007426 ORTHO05D009167 3.6e-06 58.2 187 28.3
Psat6g098880 Pisum sativum HOM05D007291 ORTHO05D009038 3.6e-06 58.2 203 25.6
CAN.G1489.16 Capsicum annuum HOM05D007426 ORTHO05D009167 4.7e-06 57.8 186 23.7
Gorai.005G194300 Gossypium raimondii HOM05D007426 ORTHO05D009167 4.7e-06 57.8 180 27.2
Rhsim13G0154100 Rhododendron simsii HOM05D002890 ORTHO05D009847 4.7e-06 57.8 241 23.7
HPP92_001299 Vanilla planifolia HOM05D007291 ORTHO05D009038 4.7e-06 57.8 195 27.7
ATR0559G149 Amborella trichopoda HOM05D007750 ORTHO05D009803 6.2e-06 57.4 79 35.4
CDE04G0172 Ceratophyllum demersum HOM05D007426 ORTHO05D009167 6.2e-06 57.4 180 30.0
Eucgr.J02064 Eucalyptus grandis HOM05D007212 ORTHO05D009094 6.2e-06 57.4 186 28.0
MD11G1144200 Malus domestica HOM05D007212 ORTHO05D009094 6.2e-06 57.4 186 30.6
AT4G21170 Arabidopsis thaliana HOM05D007956 ORTHO05D010152 8.1e-06 57.0 223 25.6
MSTRG.22851 Avicennia marina HOM05D005764 ORTHO05D006600 8.1e-06 57.0 255 21.6
Phvul.003G005900 Phaseolus vulgaris HOM05D007291 ORTHO05D009038 8.1e-06 57.0 222 24.8
PGR119G0474 Punica granatum HOM05D007426 ORTHO05D009167 8.1e-06 57.0 185 25.9


User provided reference genes

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