Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G19400 Arabidopsis thaliana HOM05D007311 ORTHO05D009011 2.0e-80 302.4 149 100.0
AT4G19410 Arabidopsis thaliana HOM05D000351 ORTHO05D009011 2.0e-80 302.4 149 100.0
AL7G34740 Arabidopsis lyrata HOM05D007311 ORTHO05D009011 3.2e-75 285.0 149 94.0
Carub.0007s2183 Capsella rubella HOM05D007311 ORTHO05D009011 3.2e-75 285.0 149 93.3
Sp7g18020 Schrenkiella parvula HOM05D007311 ORTHO05D009011 8.0e-74 280.4 149 92.6
BcaC09g51414 Brassica carinata HOM05D007311 ORTHO05D009011 8.8e-73 276.9 149 91.9
CARHR226190 Cardamine hirsuta HOM05D007311 ORTHO05D009011 1.2e-72 276.6 149 91.9
BraA01t01079Z Brassica rapa HOM05D007311 ORTHO05D009011 3.4e-72 275.0 149 90.6
Thhalv10024796m.g Eutrema salsugineum HOM05D000351 ORTHO05D009011 3.4e-72 275.0 149 92.6
C01p13360 Brassica napus HOM05D007311 ORTHO05D009011 4.4e-72 274.6 149 91.3
A01p11360 Brassica napus HOM05D000351 ORTHO05D009011 7.5e-72 273.9 149 89.9
BcaNung01781 Brassica carinata HOM05D007311 ORTHO05D009011 5.4e-70 267.7 149 88.6
THA.LOC104811225 Tarenaya hassleriana HOM05D007311 ORTHO05D009011 1.4e-65 253.1 149 81.9
Aa31LG6G2000 Aethionema arabicum HOM05D007311 ORTHO05D009011 1.8e-62 242.7 149 76.5
RcHm_v2.0_Chr7g0214961 Rosa chinensis HOM05D007311 ORTHO05D009011 8.9e-57 223.8 149 71.1
QL12p002522 Quercus lobata HOM05D007311 ORTHO05D009011 2.0e-56 222.6 147 69.4
CiPaw.11G077300 Carya illinoinensis HOM05D007311 ORTHO05D009011 9.8e-56 220.3 149 68.5
FAN08G0573 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.3e-55 219.9 145 71.0
Glyma.03G249600 Glycine max HOM05D007311 ORTHO05D009011 2.2e-55 219.2 149 69.1
Glyma.19G247100 Glycine max HOM05D007311 ORTHO05D009011 2.2e-55 219.2 149 69.1
PGR031G0344 Punica granatum HOM05D007311 ORTHO05D009011 2.9e-55 218.8 149 69.8
Phvul.006G104200 Phaseolus vulgaris HOM05D007311 ORTHO05D009011 8.3e-55 217.2 149 69.8
MD16G1286900 Malus domestica HOM05D007311 ORTHO05D009011 1.1e-54 216.9 149 67.8
Prupe.5G015700 Prunus persica HOM05D007311 ORTHO05D009011 1.1e-54 216.9 149 69.8
Lalb_Chr15g0076111 Lupinus albus HOM05D007311 ORTHO05D009011 1.8e-54 216.1 149 67.8
GSVIVG01036913001 Vitis vinifera HOM05D007311 ORTHO05D009011 1.8e-54 216.1 149 67.8
VMungo0540G0453 Vigna mungo HOM05D007311 ORTHO05D009011 3.2e-54 215.3 149 69.1
Ca_09529_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 9.2e-54 213.8 149 69.1
arahy.Tifrunner.gnm1.ann1.C28JQA Arachis hypogaea HOM05D007311 ORTHO05D009011 1.2e-53 213.4 149 67.1
arahy.Tifrunner.gnm1.ann1.M0M2WX Arachis hypogaea HOM05D007311 ORTHO05D009011 1.2e-53 213.4 149 67.1
TWI32G0505 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 1.2e-53 213.4 149 67.1
Lj1g0003439 Lotus japonicus HOM05D007311 ORTHO05D009011 4.6e-53 211.5 149 66.4
FAN18G0784 Fragaria x ananassa HOM05D007311 ORTHO05D009011 7.8e-53 210.7 173 60.1
Psat0s3161g0160 Pisum sativum HOM05D007311 ORTHO05D009011 1.0e-52 210.3 149 68.5
TPR.G7011 Trifolium pratense HOM05D007311 ORTHO05D009011 1.3e-52 209.9 149 66.4
Eucgr.E01832 Eucalyptus grandis HOM05D007311 ORTHO05D009011 1.7e-52 209.5 149 65.1
Ciclev10002031m.g Citrus clementina HOM05D007311 ORTHO05D009011 3.0e-52 208.8 149 67.1
Gohir.A08G147900 Gossypium hirsutum HOM05D007311 ORTHO05D009011 3.0e-52 208.8 149 66.4
Gohir.D08G169100 Gossypium hirsutum HOM05D007311 ORTHO05D009011 3.9e-52 208.4 149 65.8
Manes.15G187600 Manihot esculenta HOM05D007311 ORTHO05D009011 3.9e-52 208.4 149 65.8
FvH4_5g24490 Fragaria vesca HOM05D007311 ORTHO05D009011 8.6e-52 207.2 173 59.0
Duzib205G2009 Durio zibethinus HOM05D007311 ORTHO05D009011 1.1e-51 206.8 149 64.4
Aqoxy102s011 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 1.9e-51 206.1 149 64.4
Aqoxy2G03516 Aquilegia oxysepala HOM05D007311 ORTHO05D009011 1.9e-51 206.1 149 64.4
AUR62039076 Chenopodium quinoa HOM05D007311 ORTHO05D009011 2.5e-51 205.7 149 66.4
Nn3g18546 Nelumbo nucifera HOM05D007311 ORTHO05D009011 2.5e-51 205.7 148 68.2
COL.COLO4_16729 Corchorus olitorius HOM05D007311 ORTHO05D009011 3.3e-51 205.3 149 63.8
Cfa012633 Carpinus fangiana HOM05D007311 ORTHO05D009011 2.8e-50 202.2 142 66.2
Medtr7g115450 Medicago truncatula HOM05D007311 ORTHO05D009011 2.8e-50 202.2 149 64.4
Medtr7g115470 Medicago truncatula HOM05D007311 ORTHO05D009011 2.8e-50 202.2 149 64.4
MSTRG.1753 Avicennia marina HOM05D007311 ORTHO05D009011 8.0e-50 200.7 149 64.4
CsaV3_4G007060 Cucumis sativus L. HOM05D007311 ORTHO05D009011 8.0e-50 200.7 149 62.4
DCAR_030948 Daucus carota HOM05D007311 ORTHO05D009011 1.1e-49 200.3 149 66.4
PSO210G1792 Papaver somniferum HOM05D007311 ORTHO05D009011 1.4e-49 199.9 147 63.3
Sed0011898 Sechium edule HOM05D000351 ORTHO05D000250 1.4e-49 199.9 149 62.4
ClCG07G011190 Citrullus lanatus HOM05D000351 ORTHO05D000250 3.1e-49 198.7 149 61.7
MELO3C016211.2 Cucumis melo HOM05D007311 ORTHO05D009011 4.0e-49 198.4 149 61.7
SalBow3G0367 Salvia bowleyana HOM05D007311 ORTHO05D009011 5.2e-49 198.0 149 64.4
Lsat_1_v5_gn_9_12020 Lactuca sativa HOM05D007311 ORTHO05D009011 6.8e-49 197.6 149 61.1
Cc01_g03300 Coffea canephora HOM05D007311 ORTHO05D009011 8.9e-49 197.2 149 63.8
PSO238G0022 Papaver somniferum HOM05D007311 ORTHO05D009011 8.9e-49 197.2 147 62.6
EL10Ac9g22274 Beta vulgaris HOM05D007311 ORTHO05D009011 1.5e-48 196.4 149 63.1
Hma1.2p1_0294F.1_g116450 Hydrangea macrophylla HOM05D007311 ORTHO05D009011 1.5e-48 196.4 146 65.8
HanXRQChr07g0198461 Helianthus annuus HOM05D007311 ORTHO05D009011 2.6e-48 195.7 149 59.7
Peaxi162Scf00330g01216 Petunia axillaris HOM05D007311 ORTHO05D009011 2.6e-48 195.7 147 61.9
Potri.003G106700 Populus trichocarpa HOM05D007311 ORTHO05D009011 4.4e-48 194.9 150 64.0
TAR629G0827 Trochodendron aralioides HOM05D007311 ORTHO05D009011 4.4e-48 194.9 149 63.1
ECA233G4235 Erigeron canadensis HOM05D007311 ORTHO05D009011 9.8e-48 193.7 151 60.3
Thecc.03G322100 Theobroma cacao HOM05D007311 ORTHO05D009011 9.8e-48 193.7 155 62.6
Migut.E01383 Erythranthe guttata HOM05D007311 ORTHO05D009011 1.3e-47 193.4 149 59.7
Oeu031947.3 Olea europaea HOM05D007311 ORTHO05D009011 6.4e-47 191.0 169 57.4
Nitab4.5_0000623g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 1.1e-46 190.3 147 59.9
Haze_08033 Corylus avellana HOM05D007311 ORTHO05D009011 1.9e-46 189.5 213 48.4
CANSAT35G1819 Cannabis sativa HOM05D000351 ORTHO05D000250 2.4e-46 189.1 153 58.8
Gorai.004G176300 Gossypium raimondii HOM05D007311 ORTHO05D009011 4.1e-46 188.3 187 52.9
Hund06317 Selenicereus undatus HOM05D007311 ORTHO05D009011 4.1e-46 188.3 149 59.7
Sabra03G0073500 Salix brachista HOM05D007311 ORTHO05D009011 1.2e-45 186.8 150 60.7
CDE11G0786 Ceratophyllum demersum HOM05D007311 ORTHO05D009011 2.0e-45 186.0 149 57.0
Cpa.g.sc542.2 Carica papaya HOM05D007311 ORTHO05D009011 4.6e-45 184.9 125 68.0
Nitab4.5_0007008g0080 Nicotiana tabacum HOM05D007311 ORTHO05D009011 4.6e-45 184.9 147 57.8
CAN.G22.34 Capsicum annuum HOM05D007311 ORTHO05D009011 2.3e-44 182.6 147 58.5
Solyc08g075070.3 Solanum lycopersicum HOM05D007311 ORTHO05D009011 3.0e-44 182.2 147 59.2
vmacro22112 Vaccinium macrocarpon HOM05D007311 ORTHO05D009011 3.9e-44 181.8 172 56.4
HPP92_005283 Vanilla planifolia HOM05D007311 ORTHO05D009011 5.0e-44 181.4 145 56.6
unitig_899.g14733 Utricularia gibba HOM05D007311 ORTHO05D009011 8.6e-44 180.6 150 58.7
Sc18g0005580 Simmondsia chinensis HOM05D007311 ORTHO05D009011 1.5e-43 179.9 133 63.2
SGA_v2.0_scaffold144G35891 Striga asiatica HOM05D007311 ORTHO05D009011 3.3e-43 178.7 166 54.8
MBI03_g29283_MAGBIO Magnolia biondii HOM05D006174 ORTHO05D007987 6.2e-42 174.5 131 60.3
Zm00001eb284430 Zea mays HOM05D007311 ORTHO05D009011 4.0e-41 171.8 146 52.1
ATR0796G066 Amborella trichopoda HOM05D007311 ORTHO05D009011 1.5e-40 169.9 144 54.9
QL12p002612 Quercus lobata HOM05D007311 ORTHO05D009011 5.8e-40 167.9 147 55.8
PGSC0003DMG400020814 Solanum tuberosum HOM05D007311 ORTHO05D009011 8.3e-39 164.1 175 49.1
AUR62010310 Chenopodium quinoa HOM05D007311 ORTHO05D009011 1.1e-38 163.7 121 61.2
CSS0046759 Camellia sinensis var. sinensis HOM05D007311 ORTHO05D009011 6.0e-37 157.9 111 67.6
Os05g0241400 Oryza sativa ssp. japonica HOM05D007311 ORTHO05D009011 4.7e-34 148.3 120 55.0
Dinv37446 Davidia involucrata HOM05D007311 ORTHO05D009011 8.9e-33 144.1 104 64.4
Ah.01g011070 Amaranthus hybridus HOM05D007311 ORTHO05D009011 4.6e-29 131.7 104 57.7
BcaC02g07636 Brassica carinata HOM05D007311 ORTHO05D009011 1.9e-27 126.3 103 69.9
TWI60G1527 Tripterygium wilfordii HOM05D007311 ORTHO05D009011 2.1e-26 122.9 149 45.6
SEGI_31752 Sequoiadendron giganteum HOM05D007311 ORTHO05D009011 3.1e-25 119.0 102 49.0
AagrBONN_evm.TU.Sc2ySwM_228.4293 Anthoceros agrestis HOM05D007311 ORTHO05D009011 4.0e-25 118.6 146 36.3
Sopen08g023700 Solanum pennellii HOM05D007311 ORTHO05D009011 4.0e-25 118.6 92 57.6
Eucgr.E01790 Eucalyptus grandis HOM05D007311 ORTHO05D009011 5.8e-24 114.8 82 59.8
Eucgr.E01869 Eucalyptus grandis HOM05D007311 ORTHO05D009011 4.8e-18 95.1 66 68.2
SalBow1G6002 Salvia bowleyana HOM05D007311 ORTHO05D009011 1.2e-16 90.5 66 63.6
SalBow8G5581 Salvia bowleyana HOM05D007311 ORTHO05D009011 2.0e-16 89.7 67 61.2
Rhsim07G0141400 Rhododendron simsii HOM05D000351 ORTHO05D000250 7.6e-16 87.8 123 44.7
SMO139G0010 Selaginella moellendorffii HOM05D007311 ORTHO05D009011 7.6e-16 87.8 151 31.1
Mapoly0040s0015 Marchantia polymorpha HOM05D007311 ORTHO05D009011 6.4e-15 84.7 146 29.5
Medtr5g045430 Medicago truncatula HOM05D007311 ORTHO05D009011 3.5e-13 79.0 66 59.1
Ciclev10003443m.g Citrus clementina HOM05D007311 ORTHO05D009011 6.7e-12 74.7 78 44.9
FAN13G1634 Fragaria x ananassa HOM05D007311 ORTHO05D009011 1.5e-11 73.6 48 70.8
Zm00001eb347540 Zea mays HOM05D007311 ORTHO05D009011 2.1e-10 69.7 62 48.4
Ca_12103_v3 Cicer arietinum L. HOM05D007311 ORTHO05D009011 3.7e-10 68.9 38 76.3
Medtr2g084355 Medicago truncatula HOM05D003237 ORTHO05D003631 2.9e-07 59.3 44 68.2
Eucgr.E01843 Eucalyptus grandis HOM05D007311 ORTHO05D009011 6.4e-07 58.2 47 46.8


User provided reference genes

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