Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G19260 Arabidopsis thaliana HOM05D027970 ORTHO05D026825 3.0e-162 575.1 289 100.0
AT4G19340 Arabidopsis thaliana HOM05D027970 ORTHO05D026825 1.5e-124 449.9 229 99.6
AT4G19275 Arabidopsis thaliana HOM05D027970 ORTHO05D026825 4.6e-102 375.2 229 86.0
AL7G34830 Arabidopsis lyrata HOM05D027970 ORTHO05D026825 4.4e-60 235.7 231 57.6
Carub.0007s2189 Capsella rubella HOM05D000249 ORTHO05D000206 2.9e-56 223.0 359 42.9
AT4G19330 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 3.5e-25 119.8 66 86.4
AL7G34820 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.7e-19 99.8 54 83.3
BraA01t01075Z Brassica rapa HOM05D000249 ORTHO05D022035 6.0e-17 92.4 54 77.8
C01p13320 Brassica napus HOM05D000249 ORTHO05D022035 3.0e-16 90.1 54 75.9
AT4G19250 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 1.1e-13 81.6 38 97.4
AL7G34800 Arabidopsis lyrata HOM05D001835 ORTHO05D012797 1.7e-11 74.3 85 49.4
Carub.0007s2187 Capsella rubella HOM05D009114 ORTHO05D012797 4.9e-11 72.8 83 50.6
Ca_25050_v3 Cicer arietinum L. HOM05D001835 ORTHO05D001899 2.7e-09 67.0 81 45.7
AT4G19360 Arabidopsis thaliana HOM05D001835 ORTHO05D012797 3.5e-09 66.6 86 44.2
BcaNung01786 Brassica carinata HOM05D000249 ORTHO05D000206 4.6e-09 66.2 55 60.0
BcaC09g51419 Brassica carinata HOM05D000249 ORTHO05D000206 6.0e-09 65.9 56 58.9
BolC1t01306H Brassica oleracea HOM05D000249 ORTHO05D000206 6.0e-09 65.9 56 58.9
Medtr5g025630 Medicago truncatula HOM05D001835 ORTHO05D001899 6.0e-09 65.9 88 44.3
Duzib205G1377 Durio zibethinus HOM05D001835 ORTHO05D001899 1.0e-08 65.1 88 46.6
C01p13300 Brassica napus HOM05D000249 ORTHO05D000206 3.0e-08 63.5 56 57.1
Phvul.002G122400 Phaseolus vulgaris HOM05D001835 ORTHO05D001899 6.6e-08 62.4 82 45.1
Thecc.03G320500 Theobroma cacao HOM05D001835 ORTHO05D001899 6.6e-08 62.4 83 44.6
Duzib068G1023 Durio zibethinus HOM05D001835 ORTHO05D001899 2.5e-07 60.5 95 41.1
COL.COLO4_16746 Corchorus olitorius HOM05D001835 ORTHO05D001899 3.3e-07 60.1 95 41.1
Dinv37433 Davidia involucrata HOM05D001835 ORTHO05D001899 3.3e-07 60.1 134 37.3
VMungo1215G2782 Vigna mungo HOM05D001835 ORTHO05D001899 4.3e-07 59.7 135 33.3
Thhalv10026900m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 5.6e-07 59.3 50 60.0
SalBow4G1085 Salvia bowleyana HOM05D001835 ORTHO05D001899 5.6e-07 59.3 83 42.2
A01p11270 Brassica napus HOM05D000249 ORTHO05D000206 7.3e-07 58.9 56 58.9
A01p11300 Brassica napus HOM05D000249 ORTHO05D000206 7.3e-07 58.9 56 58.9
Glyma.01G153100 Glycine max HOM05D001835 ORTHO05D001899 7.3e-07 58.9 85 41.2
Atru.chr8.2612 Acer truncatum HOM05D001835 ORTHO05D001899 9.6e-07 58.5 88 37.5
arahy.Tifrunner.gnm1.ann1.CA2BVZ Arachis hypogaea HOM05D001835 ORTHO05D001899 9.6e-07 58.5 90 36.7
arahy.Tifrunner.gnm1.ann1.E2PDKD Arachis hypogaea HOM05D001835 ORTHO05D001899 9.6e-07 58.5 90 36.7
Nitab4.5_0006244g0020 Nicotiana tabacum HOM05D001835 ORTHO05D001899 1.3e-06 58.2 78 44.9
QL12p003581 Quercus lobata HOM05D001835 ORTHO05D001899 1.3e-06 58.2 130 33.1
BraA01t01072Z Brassica rapa HOM05D000249 ORTHO05D000206 1.6e-06 57.8 56 57.1
BraA01t01074Z Brassica rapa HOM05D000249 ORTHO05D000206 1.6e-06 57.8 56 57.1
Cfa012307 Carpinus fangiana HOM05D001835 ORTHO05D001899 1.6e-06 57.8 89 39.3
Migut.A00471 Erythranthe guttata HOM05D001835 ORTHO05D001899 1.6e-06 57.8 84 41.7
Solyc08g075300.4 Solanum lycopersicum HOM05D001835 ORTHO05D001899 1.6e-06 57.8 90 42.2
Sopen08g023900 Solanum pennellii HOM05D001835 ORTHO05D001899 1.6e-06 57.8 90 42.2
Lj3C1021G8 Lonicera japonica HOM05D001835 ORTHO05D001899 3.6e-06 56.6 95 38.9
Peaxi162Scf00550g00444 Petunia axillaris HOM05D001835 ORTHO05D001899 3.6e-06 56.6 90 37.8
Potri.004G235100 Populus trichocarpa HOM05D001835 ORTHO05D001899 4.8e-06 56.2 88 40.9
PGR102G0475 Punica granatum HOM05D001835 ORTHO05D001899 4.8e-06 56.2 92 35.9
Cpa.g.sc13.66 Carica papaya HOM05D001835 ORTHO05D001899 6.2e-06 55.8 75 37.3
Gohir.A03G097200 Gossypium hirsutum HOM05D001835 ORTHO05D001899 6.2e-06 55.8 92 38.0
Gorai.005G137500 Gossypium raimondii HOM05D001835 ORTHO05D001899 6.2e-06 55.8 92 38.0
Lj2g0003751 Lotus japonicus HOM05D001835 ORTHO05D001899 6.2e-06 55.8 91 39.6
Duzib268G1333 Durio zibethinus HOM05D001835 ORTHO05D001899 8.1e-06 55.5 91 35.2


User provided reference genes

Program Settings