Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G19190 Arabidopsis thaliana HOM05D006577 ORTHO05D008428 5.5e-283 977.2 596 100.0
AL7G34890 Arabidopsis lyrata HOM05D006577 ORTHO05D008428 4.4e-224 781.6 597 80.6
Sp7g17900 Schrenkiella parvula HOM05D006577 ORTHO05D008428 1.2e-216 756.9 597 81.6
A01p11160 Brassica napus HOM05D006577 ORTHO05D008428 8.3e-215 750.7 590 77.1
BraA01t01062Z Brassica rapa HOM05D006577 ORTHO05D008428 8.3e-215 750.7 590 76.3
C01p13200 Brassica napus HOM05D006577 ORTHO05D008428 8.1e-210 734.2 590 75.4
CARHR226070 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.3e-207 726.9 598 77.8
Carub.0007s2195 Capsella rubella HOM05D006577 ORTHO05D008428 1.4e-206 723.4 600 78.0
BolC1t01294H Brassica oleracea HOM05D006577 ORTHO05D008428 1.6e-205 719.9 590 75.1
BcaC09g51429 Brassica carinata HOM05D006577 ORTHO05D008428 9.0e-201 704.1 568 75.7
Thhalv10024821m.g Eutrema salsugineum HOM05D006577 ORTHO05D008428 4.8e-186 655.2 578 70.8
Aa31LG6G1900 Aethionema arabicum HOM05D006577 ORTHO05D008428 4.2e-166 589.0 564 73.8
THA.LOC104806196 Tarenaya hassleriana HOM05D006577 ORTHO05D008428 1.3e-135 487.6 515 62.5
Gohir.A08G149500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 4.7e-133 479.2 321 74.5
BcaC09g51430 Brassica carinata HOM05D006577 ORTHO05D008428 1.0e-132 478.0 267 89.1
Gohir.D08G170500 Gossypium hirsutum HOM05D006577 ORTHO05D008428 1.5e-131 474.2 321 73.8
Gorai.004G178000 Gossypium raimondii HOM05D006577 ORTHO05D008428 2.0e-131 473.8 321 73.5
CiPaw.11G075200 Carya illinoinensis HOM05D006577 ORTHO05D008428 3.7e-130 469.5 319 75.2
CSS0014058 Camellia sinensis var. sinensis HOM05D006577 ORTHO05D008428 4.1e-129 466.1 317 74.8
Eucgr.D02560 Eucalyptus grandis HOM05D006577 ORTHO05D008428 5.4e-129 465.7 319 72.1
TWI73G0063 Tripterygium wilfordii HOM05D006577 ORTHO05D008428 3.5e-128 463.0 320 73.8
Thecc.03G318900 Theobroma cacao HOM05D006577 ORTHO05D008428 1.3e-127 461.1 321 73.5
Manes.17G000100 Manihot esculenta HOM05D006577 ORTHO05D008428 2.9e-127 459.9 320 74.1
MELO3C010522.2 Cucumis melo HOM05D006577 ORTHO05D008428 3.8e-127 459.5 319 74.0
CAN.G1026.7 Capsicum annuum HOM05D006577 ORTHO05D008428 6.6e-127 458.8 318 73.6
Dinv41806 Davidia involucrata HOM05D006577 ORTHO05D008428 6.6e-127 458.8 321 74.8
Prupe.1G353400 Prunus persica HOM05D006577 ORTHO05D008428 8.6e-127 458.4 323 72.4
Cfa012291 Carpinus fangiana HOM05D000435 ORTHO05D000430 1.9e-126 457.2 313 74.1
CsaV3_4G027910 Cucumis sativus L. HOM05D006577 ORTHO05D008428 1.9e-126 457.2 320 73.4
COL.COLO4_11282 Corchorus olitorius HOM05D006577 ORTHO05D008428 2.5e-126 456.8 320 72.8
PGR042G0863 Punica granatum HOM05D006577 ORTHO05D008428 2.5e-126 456.8 321 71.3
VMungo1215G3406 Vigna mungo HOM05D006577 ORTHO05D008428 4.2e-126 456.1 315 74.0
CANSAT35G0698 Cannabis sativa HOM05D006577 ORTHO05D008428 5.5e-126 455.7 321 73.2
Cpa.g.sc90.36 Carica papaya HOM05D006577 ORTHO05D008428 5.5e-126 455.7 320 72.5
Peaxi162Scf00193g00730 Petunia axillaris HOM05D006577 ORTHO05D008428 9.5e-126 454.9 315 73.0
Actinidia32789 Actinidia chinensis HOM05D006577 ORTHO05D008428 2.8e-125 453.4 317 73.2
TPR.G29075 Trifolium pratense HOM05D006577 ORTHO05D008428 4.7e-125 452.6 320 72.8
GSVIVG01036870001 Vitis vinifera HOM05D006577 ORTHO05D008428 4.7e-125 452.6 317 73.5
arahy.Tifrunner.gnm1.ann1.0U4NMV Arachis hypogaea HOM05D006577 ORTHO05D008428 6.1e-125 452.2 321 72.3
arahy.Tifrunner.gnm1.ann1.Y0J304 Arachis hypogaea HOM05D006577 ORTHO05D008428 6.1e-125 452.2 321 72.3
Rhsim11G0036700 Rhododendron simsii HOM05D006577 ORTHO05D008428 6.1e-125 452.2 314 73.2
Glyma.01G154300 Glycine max HOM05D006577 ORTHO05D008428 8.0e-125 451.8 319 72.7
FvH4_2g37380 Fragaria vesca HOM05D006577 ORTHO05D008428 1.4e-124 451.1 319 74.0
Phvul.002G121300 Phaseolus vulgaris HOM05D006577 ORTHO05D008428 1.8e-124 450.7 319 72.7
Sopen08g024050 Solanum pennellii HOM05D006577 ORTHO05D008428 2.3e-124 450.3 318 72.3
MD08G1001400 Malus domestica HOM05D006577 ORTHO05D008428 3.0e-124 449.9 318 73.6
Solyc08g075420.4 Solanum lycopersicum HOM05D006577 ORTHO05D008428 3.0e-124 449.9 318 72.3
Nitab4.5_0007095g0010 Nicotiana tabacum HOM05D006577 ORTHO05D008428 4.0e-124 449.5 315 72.7
Psat1g131640 Pisum sativum HOM05D006577 ORTHO05D008428 6.8e-124 448.7 321 71.7
CDE01G0285 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 1.5e-123 447.6 317 73.5
Ca_13135_v3 Cicer arietinum L. HOM05D006577 ORTHO05D008428 2.0e-123 447.2 320 71.9
Cc08_g05650 Coffea canephora HOM05D006577 ORTHO05D008428 2.0e-123 447.2 318 73.3
vmacro00091 Vaccinium macrocarpon HOM05D006577 ORTHO05D008428 2.0e-123 447.2 313 73.5
CDE12G0431 Ceratophyllum demersum HOM05D006577 ORTHO05D008428 2.6e-123 446.8 317 73.8
Haze_08434 Corylus avellana HOM05D006577 ORTHO05D008428 3.4e-123 446.4 338 69.2
Glyma.11G090300 Glycine max HOM05D006577 ORTHO05D008428 4.4e-123 446.0 319 72.4
Aqoxy7G00896 Aquilegia oxysepala HOM05D006577 ORTHO05D008428 5.7e-123 445.7 317 71.3
Medtr2g040410 Medicago truncatula HOM05D006577 ORTHO05D008428 5.7e-123 445.7 320 71.9
ECA233G0973 Erigeron canadensis HOM05D006577 ORTHO05D008428 2.2e-122 443.7 313 70.6
Nn7g37388 Nelumbo nucifera HOM05D006577 ORTHO05D008428 3.7e-122 443.0 317 71.0
Lj2g0006155 Lotus japonicus HOM05D006577 ORTHO05D008428 8.3e-122 441.8 320 69.7
TAR629G1131 Trochodendron aralioides HOM05D006577 ORTHO05D008428 8.3e-122 441.8 316 70.9
DCAR_030906 Daucus carota HOM05D006577 ORTHO05D008428 1.1e-121 441.4 315 70.2
RcHm_v2.0_Chr6g0304321 Rosa chinensis HOM05D006577 ORTHO05D008428 1.4e-121 441.0 320 72.5
Migut.E01373 Erythranthe guttata HOM05D006577 ORTHO05D008428 1.8e-121 440.7 314 72.9
Lalb_Chr16g0380351 Lupinus albus HOM05D006577 ORTHO05D008428 4.1e-121 439.5 308 72.1
Oeu046783.1 Olea europaea HOM05D006577 ORTHO05D008428 1.2e-120 438.0 315 70.8
Potri.004G236300 Populus trichocarpa HOM05D006577 ORTHO05D008428 1.2e-120 438.0 318 71.1
Lsat_1_v5_gn_6_17281 Lactuca sativa HOM05D006577 ORTHO05D008428 2.7e-120 436.8 315 69.8
ClCG11G016060 Citrullus lanatus HOM05D006577 ORTHO05D008428 3.5e-120 436.4 338 68.3
Ciclev10011516m.g Citrus clementina HOM05D006577 ORTHO05D008428 3.5e-120 436.4 312 71.5
Atru.chr8.2629 Acer truncatum HOM05D006577 ORTHO05D008428 1.0e-119 434.9 316 69.0
FAN21G2299 Fragaria x ananassa HOM05D006577 ORTHO05D008428 2.3e-119 433.7 319 72.7
MSTRG.1757 Avicennia marina HOM05D006577 ORTHO05D008428 2.9e-119 433.3 313 72.2
EL10Ac8g19602 Beta vulgaris HOM05D006577 ORTHO05D008428 7.3e-118 428.7 314 70.4
HanXRQChr07g0198411 Helianthus annuus HOM05D006577 ORTHO05D008428 7.3e-118 428.7 314 70.1
Oeu015543.2 Olea europaea HOM05D006577 ORTHO05D008428 6.1e-117 425.6 347 65.1
AUR62030109 Chenopodium quinoa HOM05D006577 ORTHO05D008428 1.5e-115 421.0 312 69.2
FAN27G1697 Fragaria x ananassa HOM05D006577 ORTHO05D008428 1.5e-115 421.0 356 65.7
SEGI_36653 Sequoiadendron giganteum HOM05D006577 ORTHO05D008428 2.2e-114 417.2 321 65.7
unitig_37.g12910 Utricularia gibba HOM05D006577 ORTHO05D008428 2.2e-114 417.2 298 70.1
FAN20G0322 Fragaria x ananassa HOM05D006577 ORTHO05D008428 4.9e-114 416.0 337 67.7
HPP92_002488 Vanilla planifolia HOM05D006577 ORTHO05D008428 8.3e-114 415.2 291 70.8
PSO502G0007 Papaver somniferum HOM05D006577 ORTHO05D008428 9.2e-113 411.8 313 67.4
PSO675G5955 Papaver somniferum HOM05D006577 ORTHO05D008428 4.6e-112 409.5 313 67.4
ATR0568G043 Amborella trichopoda HOM05D006577 ORTHO05D008428 7.8e-112 408.7 321 67.0
Sabra01G0180600 Salix brachista HOM05D006577 ORTHO05D008428 8.0e-109 398.7 390 57.7
Mapoly0190s0006 Marchantia polymorpha HOM05D006577 ORTHO05D008428 2.8e-101 373.6 301 64.5
Pp3c3_31660 Physcomitrium patens HOM05D006577 ORTHO05D008428 1.7e-98 364.4 282 64.9
Lj3A8G25 Lonicera japonica HOM05D006577 ORTHO05D008428 3.7e-98 363.2 260 71.2
QL12p004173 Quercus lobata HOM05D006577 ORTHO05D008428 5.4e-97 359.4 558 42.1
SMO172G0042 Selaginella moellendorffii HOM05D006577 ORTHO05D008428 5.1e-95 352.8 292 61.3
SGA_v2.0_scaffold144G35886 Striga asiatica HOM05D006577 ORTHO05D008428 5.8e-91 339.3 285 64.6
Sc24g0001520 Simmondsia chinensis HOM05D006577 ORTHO05D008428 8.1e-85 318.9 226 70.8
CBR_g50314 Chara braunii HOM05D006577 ORTHO05D008428 3.1e-84 317.0 290 57.6
Sed0006082 Sechium edule HOM05D006577 ORTHO05D008428 2.4e-81 307.4 219 69.9
Zm00001eb227500 Zea mays HOM05D006577 ORTHO05D008428 2.5e-78 297.4 224 66.5
Lj3A28G25 Lonicera japonica HOM05D006577 ORTHO05D008428 3.2e-65 253.8 191 69.1
Ah.09g232390 Amaranthus hybridus HOM05D006577 ORTHO05D008428 8.2e-61 239.2 313 47.6
Hund17692 Selenicereus undatus HOM05D006577 ORTHO05D008428 1.8e-55 221.5 140 75.0
Hund17694 Selenicereus undatus HOM05D006577 ORTHO05D008428 5.1e-55 219.9 189 64.0
Lj9P453T24 Lonicera japonica HOM05D006577 ORTHO05D008428 1.0e-47 195.7 155 62.6
HanXRQChr07g0198421 Helianthus annuus HOM05D006577 ORTHO05D008428 6.7e-47 193.0 185 57.8
MCO15G109 Micromonas commoda HOM05D006577 ORTHO05D008428 8.5e-42 176.0 293 38.6
CARHR123800 Cardamine hirsuta HOM05D006577 ORTHO05D008428 1.5e-30 138.7 69 94.2
Zm00001eb395460 Zea mays HOM05D006577 ORTHO05D008428 1.4e-28 132.1 101 68.3
Zm00001eb339160 Zea mays HOM05D006577 ORTHO05D008428 2.6e-27 127.9 100 67.0
VMungo0251G3731 Vigna mungo HOM05D006577 ORTHO05D008428 8.5e-26 122.9 93 69.9
Os06g0708900 Oryza sativa ssp. japonica HOM05D006577 ORTHO05D008428 2.5e-25 121.3 96 65.6
TPR.G30154 Trifolium pratense HOM05D006577 ORTHO05D008428 4.2e-25 120.6 197 45.2
MD15G1000700 Malus domestica HOM05D006577 ORTHO05D008428 4.5e-19 100.5 117 55.6
Nitab4.5_0000030g0480 Nicotiana tabacum HOM05D006577 ORTHO05D008428 6.5e-18 96.7 59 76.3
FAN21G2282 Fragaria x ananassa HOM05D006577 ORTHO05D011051 3.6e-16 90.9 61 70.5
FAN21G2462 Fragaria x ananassa HOM05D006577 ORTHO05D011051 1.8e-15 88.6 61 68.9
Cre06.g280700 Chlamydomonas reinhardtii HOM05D006577 ORTHO05D008428 2.0e-14 85.1 120 39.2
BcaB08g35318 Brassica carinata HOM05D006577 ORTHO05D008428 7.5e-14 83.2 50 80.0
FAN21G2626 Fragaria x ananassa HOM05D006577 ORTHO05D011051 4.9e-13 80.5 61 67.2
TPR.G13376 Trifolium pratense HOM05D006577 ORTHO05D008428 4.9e-13 80.5 67 62.7
AUR62042461 Chenopodium quinoa HOM05D006577 ORTHO05D008428 1.8e-12 78.6 53 69.8
FvH4_3g03932 Fragaria vesca HOM05D006577 ORTHO05D008428 1.8e-12 78.6 39 92.3
Lj3A8T28 Lonicera japonica HOM05D006577 ORTHO05D008428 2.0e-11 75.1 48 70.8
Lj3C28T3 Lonicera japonica HOM05D006577 ORTHO05D008428 1.3e-10 72.4 48 68.8


User provided reference genes

Program Settings