Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G19160 Arabidopsis thaliana HOM05D006098 ORTHO05D007470 2.2e-252 875.2 454 100.0
AL7G34930 Arabidopsis lyrata HOM05D006098 ORTHO05D007470 1.8e-230 802.4 455 94.1
Carub.0007s2199 Capsella rubella HOM05D006098 ORTHO05D007470 2.9e-220 768.5 457 88.6
CARHR226030 Cardamine hirsuta HOM05D006098 ORTHO05D007470 2.2e-191 672.5 493 75.9
Sp7g17860 Schrenkiella parvula HOM05D006098 ORTHO05D007470 3.8e-191 671.8 478 77.8
THA.LOC104811082 Tarenaya hassleriana HOM05D006098 ORTHO05D007470 1.5e-184 649.8 467 74.3
Thhalv10025127m.g Eutrema salsugineum HOM05D006098 ORTHO05D007470 4.2e-182 641.7 474 76.4
BcaNung04007 Brassica carinata HOM05D006098 ORTHO05D007470 5.1e-172 608.2 468 73.1
Aa31LG6G1850 Aethionema arabicum HOM05D006098 ORTHO05D007470 2.1e-162 576.2 455 70.5
BcaC09g51434 Brassica carinata HOM05D006098 ORTHO05D007470 5.3e-161 571.6 465 71.8
BolC1t01289H Brassica oleracea HOM05D006098 ORTHO05D007470 1.5e-160 570.1 467 71.5
C01p13160 Brassica napus HOM05D006098 ORTHO05D007470 5.8e-160 568.2 466 71.7
A01p11120 Brassica napus HOM05D006098 ORTHO05D007470 5.1e-156 555.1 476 69.3
BraA01t01058Z Brassica rapa HOM05D006098 ORTHO05D007470 3.7e-154 548.9 466 70.8
Cpa.g.sc71.63 Carica papaya HOM05D006098 ORTHO05D007470 6.7e-148 528.1 430 64.4
COL.COLO4_10360 Corchorus olitorius HOM05D006098 ORTHO05D007470 1.1e-145 520.8 436 65.8
Thecc.03G318000 Theobroma cacao HOM05D006098 ORTHO05D007470 2.2e-143 513.1 396 69.2
Gorai.008G220000 Gossypium raimondii HOM05D006098 ORTHO05D007470 5.5e-142 508.4 437 64.1
Duzib205G1615 Durio zibethinus HOM05D006098 ORTHO05D007470 7.2e-142 508.1 456 62.3
BcaC01g00601 Brassica carinata HOM05D006098 ORTHO05D007470 2.3e-140 503.1 455 65.9
BcaB04g18531 Brassica carinata HOM05D006098 ORTHO05D007470 8.8e-140 501.1 478 64.6
BolC3t20457H Brassica oleracea HOM05D006098 ORTHO05D007470 1.1e-139 500.7 468 65.4
C03p81800 Brassica napus HOM05D006098 ORTHO05D007470 3.7e-138 495.7 451 66.1
AUR62010477 Chenopodium quinoa HOM05D006098 ORTHO05D007470 6.3e-138 495.0 387 66.9
A08p14200 Brassica napus HOM05D006098 ORTHO05D007470 1.4e-137 493.8 469 64.8
BraA08t33414Z Brassica rapa HOM05D006098 ORTHO05D007470 1.4e-137 493.8 469 64.8
PGR031G3371 Punica granatum HOM05D006098 ORTHO05D007470 2.4e-137 493.0 458 60.9
Gorai.004G178500 Gossypium raimondii HOM05D006098 ORTHO05D007470 3.1e-137 492.7 440 60.5
Gohir.A08G150000 Gossypium hirsutum HOM05D006098 ORTHO05D007470 4.1e-137 492.3 440 60.2
Ah.12g058500 Amaranthus hybridus HOM05D006098 ORTHO05D007470 2.6e-136 489.6 387 66.4
Potri.001G193400 Populus trichocarpa HOM05D006098 ORTHO05D007470 4.5e-136 488.8 465 60.9
EL10Ac5g12579 Beta vulgaris HOM05D006098 ORTHO05D007470 5.9e-136 488.4 387 66.4
TAR629G3250 Trochodendron aralioides HOM05D006098 ORTHO05D007470 1.0e-135 487.6 440 60.5
Atru.chr8.2640 Acer truncatum HOM05D006098 ORTHO05D007470 1.3e-135 487.3 393 66.4
Dinv41811 Davidia involucrata HOM05D006098 ORTHO05D007470 1.7e-135 486.9 377 68.2
GSVIVG01036872001 Vitis vinifera HOM05D006098 ORTHO05D007470 6.5e-135 485.0 396 66.2
Nn1g09368 Nelumbo nucifera HOM05D006098 ORTHO05D007470 2.5e-134 483.0 447 60.6
Potri.003G033300 Populus trichocarpa HOM05D006098 ORTHO05D007470 4.2e-134 482.3 392 66.1
Manes.15G184300 Manihot esculenta HOM05D006098 ORTHO05D007470 5.5e-134 481.9 422 62.6
Sabra01G0135500 Salix brachista HOM05D006098 ORTHO05D007470 1.6e-133 480.3 469 59.7
Cc08_g05440 Coffea canephora HOM05D006098 ORTHO05D007470 1.0e-132 477.6 417 61.4
CSS0030969 Camellia sinensis var. sinensis HOM05D006098 ORTHO05D007470 1.8e-132 476.9 448 58.9
AUR62030416 Chenopodium quinoa HOM05D006098 ORTHO05D007470 1.8e-132 476.9 419 61.8
Rhsim11G0034900 Rhododendron simsii HOM05D006098 ORTHO05D007470 6.7e-132 474.9 416 62.0
Actinidia01257 Actinidia chinensis HOM05D006098 ORTHO05D007470 8.8e-132 474.6 421 61.0
Oeu042191.1 Olea europaea HOM05D006098 ORTHO05D007470 1.1e-131 474.2 400 64.0
Oeu057164.1 Olea europaea HOM05D006098 ORTHO05D007470 1.1e-131 474.2 425 61.4
Oeu042192.1 Olea europaea HOM05D006098 ORTHO05D007470 1.5e-131 473.8 400 64.0
Lj8A337G13 Lonicera japonica HOM05D006098 ORTHO05D007470 2.0e-131 473.4 358 68.4
HanXRQChr13g0411151 Helianthus annuus HOM05D006098 ORTHO05D007470 5.7e-131 471.9 415 61.7
ECA246G0847 Erigeron canadensis HOM05D006098 ORTHO05D007470 7.4e-131 471.5 425 60.9
Nn7g37397 Nelumbo nucifera HOM05D006098 ORTHO05D007470 1.7e-130 470.3 446 60.5
Lsat_1_v5_gn_3_19721 Lactuca sativa HOM05D006098 ORTHO05D007470 6.3e-130 468.4 400 63.2
Peaxi162Scf00045g00071 Petunia axillaris HOM05D006098 ORTHO05D007470 1.4e-129 467.2 435 59.5
FvH4_2g37220 Fragaria vesca HOM05D006098 ORTHO05D007470 1.8e-129 466.8 414 60.4
Duzib068G0239 Durio zibethinus HOM05D006098 ORTHO05D007470 2.4e-129 466.5 463 59.0
Actinidia14735 Actinidia chinensis HOM05D006098 ORTHO05D007470 3.1e-129 466.1 373 66.5
FAN27G2650 Fragaria x ananassa HOM05D006098 ORTHO05D007470 3.5e-128 462.6 418 59.6
RcHm_v2.0_Chr6g0304491 Rosa chinensis HOM05D006098 ORTHO05D007470 4.5e-128 462.2 372 65.3
PGSC0003DMG400018483 Solanum tuberosum HOM05D006098 ORTHO05D007470 5.9e-128 461.8 435 60.2
ECA240G1264 Erigeron canadensis HOM05D006098 ORTHO05D007470 1.0e-127 461.1 422 60.0
SalBow4G1396 Salvia bowleyana HOM05D006098 ORTHO05D007470 2.2e-127 459.9 383 63.4
CAN.G1026.8 Capsicum annuum HOM05D006098 ORTHO05D007470 2.9e-127 459.5 424 59.4
MSTRG.1762 Avicennia marina HOM05D006098 ORTHO05D007470 3.8e-127 459.1 375 64.5
FAN20G1855 Fragaria x ananassa HOM05D006098 ORTHO05D007470 3.8e-127 459.1 414 60.1
Nitab4.5_0011712g0010 Nicotiana tabacum HOM05D006098 ORTHO05D007470 6.5e-127 458.4 466 57.1
DCAR_028369 Daucus carota HOM05D006098 ORTHO05D007470 8.5e-127 458.0 382 63.6
Actinidia18166 Actinidia chinensis HOM05D006098 ORTHO05D007470 1.1e-126 457.6 373 65.7
Sopen08g001580 Solanum pennellii HOM05D006098 ORTHO05D007470 1.1e-126 457.6 425 60.0
Rhsim11G0035500 Rhododendron simsii HOM05D006098 ORTHO05D007470 1.5e-126 457.2 422 59.7
Peaxi162Scf00053g00062 Petunia axillaris HOM05D006098 ORTHO05D007470 1.9e-126 456.8 468 56.6
vmacro00080 Vaccinium macrocarpon HOM05D006098 ORTHO05D007470 4.2e-126 455.7 374 63.9
CAN.G884.14 Capsicum annuum HOM05D006098 ORTHO05D007470 9.4e-126 454.5 381 63.5
CAN.G884.9 Capsicum annuum HOM05D006098 ORTHO05D007470 1.6e-125 453.8 381 63.5
Solyc08g075520.4 Solanum lycopersicum HOM05D006098 ORTHO05D007470 3.6e-125 452.6 424 59.0
MBI15_g33454_MAGBIO Magnolia biondii HOM05D006098 ORTHO05D007470 1.0e-124 451.1 400 61.5
Nitab4.5_0000985g0060 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.0e-124 451.1 459 56.2
HanXRQChr17g0537231 Helianthus annuus HOM05D006098 ORTHO05D007470 1.8e-124 450.3 396 62.4
Solyc08g005560.3 Solanum lycopersicum HOM05D006098 ORTHO05D007470 2.3e-124 449.9 418 60.0
Migut.A00537 Erythranthe guttata HOM05D006098 ORTHO05D007470 3.0e-124 449.5 381 63.5
FAN15G0890 Fragaria x ananassa HOM05D006098 ORTHO05D007470 4.0e-124 449.1 421 59.1
HanXRQChr03g0081041 Helianthus annuus HOM05D006098 ORTHO05D007470 5.2e-124 448.7 362 64.4
Nitab4.5_0000898g0120 Nicotiana tabacum HOM05D006098 ORTHO05D007470 2.6e-123 446.4 386 61.4
Lsat_1_v5_gn_5_57121 Lactuca sativa HOM05D006098 ORTHO05D007470 3.3e-123 446.0 406 61.3
Gohir.D12G205100 Gossypium hirsutum HOM05D006098 ORTHO05D007470 9.7e-123 444.5 333 69.4
Gohir.A12G202400 Gossypium hirsutum HOM05D006098 ORTHO05D007470 6.3e-122 441.8 333 68.5
SGA_v2.0_scaffold111G31352 Striga asiatica HOM05D006098 ORTHO05D007470 1.8e-121 440.3 405 59.3
Nitab4.5_0000030g0370 Nicotiana tabacum HOM05D006098 ORTHO05D007470 7.0e-121 438.3 357 64.4
Oeu046790.1 Olea europaea HOM05D006098 ORTHO05D007470 7.0e-121 438.3 382 61.3
ATR0568G039 Amborella trichopoda HOM05D006098 ORTHO05D007470 1.3e-119 434.1 451 56.5
Nitab4.5_0001175g0140 Nicotiana tabacum HOM05D006098 ORTHO05D007470 1.7e-119 433.7 507 52.5
PSO541G2197 Papaver somniferum HOM05D006098 ORTHO05D007470 8.5e-119 431.4 418 56.9
PSO675G7908 Papaver somniferum HOM05D006098 ORTHO05D007470 1.9e-118 430.3 418 57.2
Actinidia32783 Actinidia chinensis HOM05D006098 ORTHO05D007470 5.5e-118 428.7 427 56.9
Dinv37422 Davidia involucrata HOM05D006098 ORTHO05D007470 3.6e-117 426.0 419 59.2
Sabra03G0019100 Salix brachista HOM05D006098 ORTHO05D007470 6.1e-117 425.2 476 52.7
unitig_37.g12121 Utricularia gibba HOM05D006098 ORTHO05D007470 7.7e-112 408.3 381 58.5
SalBow8G2199 Salvia bowleyana HOM05D006098 ORTHO05D007470 6.8e-108 395.2 384 57.0
SEGI_14227 Sequoiadendron giganteum HOM05D006098 ORTHO05D007470 4.4e-107 392.5 388 54.1
CDE01G0744 Ceratophyllum demersum HOM05D006098 ORTHO05D007470 3.7e-106 389.4 362 58.3
Manes.17G016300 Manihot esculenta HOM05D006098 ORTHO05D007470 4.0e-100 369.4 361 56.5
Peaxi162Scf00876g00435 Petunia axillaris HOM05D006098 ORTHO05D007470 7.0e-97 358.6 365 55.3
Sopen08g024170 Solanum pennellii HOM05D006098 ORTHO05D007470 1.3e-90 337.8 341 54.8
PGSC0003DMG400016110 Solanum tuberosum HOM05D006098 ORTHO05D007470 8.3e-90 335.1 341 54.8
CAN.G947.35 Capsicum annuum HOM05D006098 ORTHO05D007470 2.7e-80 303.5 351 51.3
Gohir.D08G171101 Gossypium hirsutum HOM05D006098 ORTHO05D007470 9.5e-78 295.0 227 65.6
FAN27G0800 Fragaria x ananassa HOM05D006098 ORTHO05D007470 1.2e-69 268.1 278 55.0
MSTRG.13909 Avicennia marina HOM05D006098 ORTHO05D007470 9.9e-67 258.5 232 59.1
AagrBONN_evm.TU.Sc2ySwM_368.631 Anthoceros agrestis HOM05D006098 ORTHO05D007470 1.5e-59 234.6 445 36.4
SMO364G0549 Selaginella moellendorffii HOM05D006098 ORTHO05D007470 1.1e-54 218.4 377 37.4
HanXRQChr05g0158621 Helianthus annuus HOM05D006098 ORTHO05D007470 1.3e-53 214.9 158 74.1
Pp3c12_14620 Physcomitrium patens HOM05D006098 ORTHO05D007470 2.1e-53 214.2 395 37.0
FvH4_2g37180 Fragaria vesca HOM05D006098 ORTHO05D007470 4.0e-44 183.3 139 66.9
Hund11040 Selenicereus undatus HOM05D006098 ORTHO05D007470 9.7e-38 162.2 379 34.0
HanXRQChr11g0344761 Helianthus annuus HOM05D006098 ORTHO05D007470 8.2e-37 159.1 125 68.0
HanXRQChr09g0271561 Helianthus annuus HOM05D006098 ORTHO05D007470 5.3e-36 156.4 118 66.9
Eucgr.D02551 Eucalyptus grandis HOM05D006098 ORTHO05D007470 3.8e-34 150.2 116 68.1
Oeu015533.1 Olea europaea HOM05D006098 ORTHO05D007470 6.1e-32 142.9 151 50.3
Oeu042198.1 Olea europaea HOM05D006098 ORTHO05D007470 1.1e-30 138.7 235 40.4
Eucgr.D02550 Eucalyptus grandis HOM05D006098 ORTHO05D007470 1.5e-30 138.3 122 59.8
Rhsim11G0035700 Rhododendron simsii HOM05D006098 ORTHO05D007470 3.7e-29 133.7 363 32.5
Pp3c4_2130 Physcomitrium patens HOM05D006098 ORTHO05D007470 3.0e-23 114.0 327 29.4
Peaxi162Scf00527g00718 Petunia axillaris HOM05D006098 ORTHO05D007470 2.2e-21 107.8 203 35.5
RcHm_v2.0_Chr4g0402301 Rosa chinensis HOM05D006098 ORTHO05D007470 1.2e-19 102.1 98 55.1
Aa31sc19G30 Aethionema arabicum HOM05D006098 ORTHO05D007470 5.0e-18 96.7 210 36.7
HanXRQChr11g0344831 Helianthus annuus HOM05D006098 ORTHO05D007470 1.1e-17 95.5 78 65.4
Prupe.1G352900 Prunus persica HOM05D006098 ORTHO05D007470 5.2e-15 86.7 70 67.1
Cre14.g621850 Chlamydomonas reinhardtii HOM05D006098 ORTHO05D007470 1.8e-12 78.2 232 29.3
Aa31LG3G3710 Aethionema arabicum HOM05D006098 ORTHO05D007470 7.7e-11 72.8 61 63.9
Sc11g0006450 Simmondsia chinensis HOM05D007414 ORTHO05D009482 5.5e-09 66.6 263 25.5
Ciclev10028543m.g Citrus clementina HOM05D007414 ORTHO05D009482 2.3e-07 61.2 225 27.1
Ah.12g062800 Amaranthus hybridus HOM05D007414 ORTHO05D009482 5.2e-07 60.1 231 24.2
AUR62026859 Chenopodium quinoa HOM05D007414 ORTHO05D009482 5.2e-07 60.1 265 23.4
PGSC0003DMG400018334 Solanum tuberosum HOM05D007414 ORTHO05D009482 1.5e-06 58.5 272 25.7
vmacro12698 Vaccinium macrocarpon HOM05D007414 ORTHO05D009482 3.4e-06 57.4 257 26.1
TAR623G0974 Trochodendron aralioides HOM05D007414 ORTHO05D009482 4.4e-06 57.0 258 25.6
Medtr3g014680 Medicago truncatula HOM05D007414 ORTHO05D009482 7.5e-06 56.2 260 24.6
PGR031G2549 Punica granatum HOM05D007414 ORTHO05D009482 7.5e-06 56.2 225 24.4
Sopen01g040130 Solanum pennellii HOM05D007414 ORTHO05D009482 9.7e-06 55.8 272 24.6


User provided reference genes

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