Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G19150 Arabidopsis thaliana HOM05D006475 ORTHO05D007969 1.7e-65 253.4 244 100.0
AL7G34940 Arabidopsis lyrata HOM05D006475 ORTHO05D007969 6.3e-60 235.0 243 85.6
Carub.0007s2200 Capsella rubella HOM05D006475 ORTHO05D007969 2.7e-55 219.5 243 85.6
CARHR226020 Cardamine hirsuta HOM05D006475 ORTHO05D007969 2.6e-53 213.0 243 81.5
Sp7g17850 Schrenkiella parvula HOM05D006475 ORTHO05D007969 7.7e-50 201.4 244 82.0
BcaC09g51436 Brassica carinata HOM05D006475 ORTHO05D007969 2.5e-48 196.4 245 80.0
BolC1t01287H Brassica oleracea HOM05D006475 ORTHO05D007969 2.5e-48 196.4 245 80.0
A01p11110 Brassica napus HOM05D006475 ORTHO05D007969 5.5e-48 195.3 245 79.6
BraA01t01057Z Brassica rapa HOM05D006475 ORTHO05D007969 5.5e-48 195.3 245 79.6
Thhalv10026017m.g Eutrema salsugineum HOM05D006475 ORTHO05D007969 5.5e-48 195.3 244 79.1
Aa31LG6G1840 Aethionema arabicum HOM05D006475 ORTHO05D007969 2.0e-45 186.8 228 81.6
BcaNung04008 Brassica carinata HOM05D006475 ORTHO05D007969 2.0e-42 176.8 205 87.3
C01p13140 Brassica napus HOM05D006475 ORTHO05D007969 1.4e-35 154.1 184 88.6
THA.LOC104812889 Tarenaya hassleriana HOM05D006475 ORTHO05D007969 2.0e-29 133.7 243 68.3
Actinidia14740 Actinidia chinensis HOM05D006475 ORTHO05D007969 7.0e-27 125.2 177 78.5
Cfa012603 Carpinus fangiana HOM05D006475 ORTHO05D007969 4.6e-26 122.5 71 85.9
Actinidia18163 Actinidia chinensis HOM05D006475 ORTHO05D007969 7.8e-26 121.7 176 78.4
Manes.17G003100 Manihot esculenta HOM05D006475 ORTHO05D007969 1.0e-25 121.3 68 86.8
CSS0010448 Camellia sinensis var. sinensis HOM05D006475 ORTHO05D007969 1.7e-25 120.6 68 86.8
Thecc.01G139200 Theobroma cacao HOM05D006475 ORTHO05D007969 2.3e-25 120.2 237 62.9
PSO717G0136 Papaver somniferum HOM05D006475 ORTHO05D007969 3.0e-25 119.8 67 86.6
CiPaw.12G072000 Carya illinoinensis HOM05D006475 ORTHO05D007969 5.0e-25 119.0 68 86.8
SalBow8G0939 Salvia bowleyana HOM05D006475 ORTHO05D007969 6.6e-25 118.6 68 83.8
PSO675G8107 Papaver somniferum HOM05D006475 ORTHO05D007969 8.6e-25 118.2 67 86.6
Peaxi162Scf00045g00636 Petunia axillaris HOM05D006475 ORTHO05D007969 8.6e-25 118.2 67 83.6
Lj8A334T74 Lonicera japonica HOM05D006475 ORTHO05D007969 1.1e-24 117.9 68 86.8
PGR031G1524 Punica granatum HOM05D006475 ORTHO05D007969 1.1e-24 117.9 235 62.6
Rhsim07G0139200 Rhododendron simsii HOM05D006475 ORTHO05D007969 1.1e-24 117.9 68 85.3
PGSC0003DMG400018460 Solanum tuberosum HOM05D006475 ORTHO05D007969 1.1e-24 117.9 68 80.9
SGA_v2.0_scaffold144G35881 Striga asiatica HOM05D006475 ORTHO05D007969 1.1e-24 117.9 68 82.4
unitig_0.g2207 Utricularia gibba HOM05D006475 ORTHO05D007969 1.1e-24 117.9 68 82.4
Nitab4.5_0006541g0010 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.5e-24 117.5 68 80.9
Potri.003G103400 Populus trichocarpa HOM05D006475 ORTHO05D007969 1.5e-24 117.5 68 82.4
Nitab4.5_0001175g0100 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.9e-24 117.1 68 80.9
Sabra03G0070600 Salix brachista HOM05D006475 ORTHO05D007969 1.9e-24 117.1 85 78.8
Gohir.A05G381700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 2.5e-24 116.7 71 78.9
Gorai.012G037900 Gossypium raimondii HOM05D006475 ORTHO05D007969 3.3e-24 116.3 71 78.9
HanXRQChr08g0226771 Helianthus annuus HOM05D006475 ORTHO05D007969 4.3e-24 115.9 71 77.5
Eucgr.D02591 Eucalyptus grandis HOM05D006475 ORTHO05D007969 5.6e-24 115.5 68 80.9
Hma1.2p1_0544F.1_g175570 Hydrangea macrophylla HOM05D006475 ORTHO05D007969 5.6e-24 115.5 74 79.7
Sopen08g001530 Solanum pennellii HOM05D006475 ORTHO05D007969 5.6e-24 115.5 68 79.4
GSVIVG01022797001 Vitis vinifera HOM05D006475 ORTHO05D007969 5.6e-24 115.5 68 82.4
arahy.Tifrunner.gnm1.ann1.SLXS5Y Arachis hypogaea HOM05D006475 ORTHO05D007969 7.3e-24 115.2 68 82.4
Nn3g19252 Nelumbo nucifera HOM05D006475 ORTHO05D007969 7.3e-24 115.2 241 62.2
Gohir.D04G033600 Gossypium hirsutum HOM05D006475 ORTHO05D007969 9.5e-24 114.8 71 77.5
DCAR_028235 Daucus carota HOM05D006475 ORTHO05D007969 1.2e-23 114.4 71 77.5
Duzib187G1769 Durio zibethinus HOM05D006475 ORTHO05D007969 1.2e-23 114.4 68 79.4
Aqoxy7G00886 Aquilegia oxysepala HOM05D006475 ORTHO05D007969 2.1e-23 113.6 67 83.6
arahy.Tifrunner.gnm1.ann1.0NMX6V Arachis hypogaea HOM05D006475 ORTHO05D007969 2.1e-23 113.6 178 75.3
arahy.Tifrunner.gnm1.ann1.CC5QNU Arachis hypogaea HOM05D006475 ORTHO05D007969 2.1e-23 113.6 178 75.3
Lsat_1_v5_gn_6_15221 Lactuca sativa HOM05D006475 ORTHO05D007969 2.1e-23 113.6 71 74.6
Solyc08g005520.3 Solanum lycopersicum HOM05D006475 ORTHO05D007969 2.1e-23 113.6 68 77.9
MSTRG.1769 Avicennia marina HOM05D006475 ORTHO05D007969 3.6e-23 112.8 67 82.1
Medtr5g026800 Medicago truncatula HOM05D006475 ORTHO05D007969 3.6e-23 112.8 66 84.8
RcHm_v2.0_Chr7g0213461 Rosa chinensis HOM05D006475 ORTHO05D007969 3.6e-23 112.8 249 61.4
EL10Ac5g11923 Beta vulgaris HOM05D006475 ORTHO05D007969 4.7e-23 112.5 70 78.6
Prupe.5G019900 Prunus persica HOM05D006475 ORTHO05D007969 8.0e-23 111.7 240 62.1
arahy.Tifrunner.gnm1.ann1.17PB5S Arachis hypogaea HOM05D006475 ORTHO05D007969 1.1e-22 111.3 66 80.3
Migut.E01351 Erythranthe guttata HOM05D006475 ORTHO05D007969 1.1e-22 111.3 68 79.4
Potri.001G130500 Populus trichocarpa HOM05D006475 ORTHO05D007969 1.1e-22 111.3 251 59.4
TPR.G17268 Trifolium pratense HOM05D006475 ORTHO05D007969 1.1e-22 111.3 66 83.3
FAN18G1960 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.8e-22 110.5 231 62.8
AUR62007413 Chenopodium quinoa HOM05D006475 ORTHO05D007969 2.3e-22 110.2 68 76.5
TWI23G0232 Tripterygium wilfordii HOM05D006475 ORTHO05D007969 2.3e-22 110.2 239 63.2
Cpa.g.sc137.18 Carica papaya HOM05D006475 ORTHO05D007969 3.1e-22 109.8 68 76.5
FAN08G1612 Fragaria x ananassa HOM05D006475 ORTHO05D007969 3.1e-22 109.8 67 80.6
Phvul.002G128300 Phaseolus vulgaris HOM05D006475 ORTHO05D007969 3.1e-22 109.8 71 76.1
Ca_25099_v3 Cicer arietinum L. HOM05D006475 ORTHO05D007969 4.0e-22 109.4 68 80.9
VMungo1215G2540 Vigna mungo HOM05D006475 ORTHO05D007969 4.0e-22 109.4 68 79.4
CANSAT21G0913 Cannabis sativa HOM05D006475 ORTHO05D007969 5.2e-22 109.0 68 73.5
Gohir.D03G018700 Gossypium hirsutum HOM05D006475 ORTHO05D007969 5.2e-22 109.0 71 74.6
arahy.Tifrunner.gnm1.ann1.Y3VSY6 Arachis hypogaea HOM05D006475 ORTHO05D007969 8.9e-22 108.2 68 76.5
CAN.G320.16 Capsicum annuum HOM05D006475 ORTHO05D007969 8.9e-22 108.2 68 75.0
FvH4_5g24000 Fragaria vesca HOM05D006475 ORTHO05D007969 8.9e-22 108.2 231 62.3
FAN13G3229 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.2e-21 107.8 232 63.4
Lalb_Chr05g0215421 Lupinus albus HOM05D006475 ORTHO05D007969 2.0e-21 107.1 178 76.4
Ah.12g056010 Amaranthus hybridus HOM05D006475 ORTHO05D007969 2.6e-21 106.7 68 75.0
Haze_08058 Corylus avellana HOM05D006475 ORTHO05D007969 2.6e-21 106.7 80 72.5
CDE11G0189 Ceratophyllum demersum HOM05D006475 ORTHO05D007969 5.8e-21 105.5 66 72.7
HPP92_021118 Vanilla planifolia HOM05D006475 ORTHO05D007969 5.8e-21 105.5 71 70.4
FAN04G1597 Fragaria x ananassa HOM05D006475 ORTHO05D007969 7.5e-21 105.1 251 62.2
AUR62027319 Chenopodium quinoa HOM05D006475 ORTHO05D007969 1.7e-20 104.0 240 61.7
Cc08_g05010 Coffea canephora HOM05D006475 ORTHO05D007969 1.7e-20 104.0 240 47.9
ECA233G2922 Erigeron canadensis HOM05D006475 ORTHO05D007969 1.7e-20 104.0 69 75.4
C03p81780 Brassica napus HOM05D006475 ORTHO05D007969 2.2e-20 103.6 70 78.6
Haze_08048 Corylus avellana HOM05D006475 ORTHO05D007969 2.2e-20 103.6 88 65.9
Glyma.09G214000 Glycine max HOM05D006475 ORTHO05D007969 2.9e-20 103.2 68 76.5
Glyma.01G149900 Glycine max HOM05D006475 ORTHO05D007969 3.7e-20 102.8 241 61.0
Hund11101 Selenicereus undatus HOM05D006475 ORTHO05D007969 4.9e-20 102.4 79 68.4
Ciclev10005760m.g Citrus clementina HOM05D006475 ORTHO05D007969 6.4e-20 102.1 57 84.2
Dinv28010 Davidia involucrata HOM05D006475 ORTHO05D007969 6.4e-20 102.1 59 81.4
Psat2g142320 Pisum sativum HOM05D006475 ORTHO05D007969 1.1e-19 101.3 58 84.5
Zm00001eb025510 Zea mays HOM05D006475 ORTHO05D007969 1.4e-19 100.9 67 76.1
BolC3t20450H Brassica oleracea HOM05D006475 ORTHO05D007969 1.9e-19 100.5 70 77.1
vmacro17427 Vaccinium macrocarpon HOM05D006475 ORTHO05D007969 1.9e-19 100.5 99 58.6
Os10g0580700 Oryza sativa ssp. japonica HOM05D006475 ORTHO05D007969 4.1e-19 99.4 67 73.1
AagrBONN_evm.TU.Sc2ySwM_228.4166 Anthoceros agrestis HOM05D006475 ORTHO05D007969 7.8e-18 95.1 70 62.9
Lj2g0004034 Lotus japonicus HOM05D006475 ORTHO05D007969 4.3e-16 89.4 50 88.0
Mapoly0051s0035 Marchantia polymorpha HOM05D006475 ORTHO05D007969 9.5e-16 88.2 67 62.7
SEGI_07236 Sequoiadendron giganteum HOM05D006475 ORTHO05D007969 2.8e-15 86.7 90 52.2
ClCG10G015530 Citrullus lanatus HOM05D000058 ORTHO05D000077 1.9e-11 73.9 46 73.9
CsaV3_3G040920 Cucumis sativus L. HOM05D006475 ORTHO05D007969 3.2e-11 73.2 46 73.9
arahy.Tifrunner.gnm1.ann1.X7UPX8 Arachis hypogaea HOM05D006475 ORTHO05D007969 9.2e-11 71.6 210 59.0
Sed0010053 Sechium edule HOM05D006475 ORTHO05D007969 1.2e-10 71.2 47 68.1
Pp3c7_14210 Physcomitrium patens HOM05D006475 ORTHO05D007969 1.7e-09 67.4 51 54.9
CBR_g41202 Chara braunii HOM05D006475 ORTHO05D007969 3.3e-08 63.2 44 63.6
arahy.Tifrunner.gnm1.ann1.79230D Arachis hypogaea HOM05D006475 ORTHO05D007969 7.3e-08 62.0 178 42.7
Oeu042209.2 Olea europaea HOM05D006475 ORTHO05D007969 9.5e-08 61.6 37 81.1
Nitab4.5_0000532g0060 Nicotiana tabacum HOM05D006475 ORTHO05D007969 1.6e-07 60.8 33 78.8
Nitab4.5_0001175g0110 Nicotiana tabacum HOM05D006475 ORTHO05D007969 2.8e-07 60.1 33 78.8
QL08p050707 Quercus lobata HOM05D006475 ORTHO05D007969 2.8e-07 60.1 33 84.8
TAR375G0514 Trochodendron aralioides HOM05D006475 ORTHO05D007969 8.1e-07 58.5 33 78.8
FAN18G4370 Fragaria x ananassa HOM05D006475 ORTHO05D007969 1.8e-06 57.4 197 60.4
Sc07g0008230 Simmondsia chinensis HOM05D006475 ORTHO05D007969 6.8e-06 55.5 33 78.8


User provided reference genes

Program Settings