Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 3.0e-54 214.9 107 100.0
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 2.1e-52 208.8 107 95.3
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 2.0e-50 202.2 107 92.5
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 7.5e-50 200.3 107 91.6
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 2.2e-49 198.7 107 89.7
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 1.1e-48 196.4 107 88.8
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 1.1e-48 196.4 107 88.8
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 9.2e-48 193.4 107 87.9
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 9.2e-48 193.4 107 87.9
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.6e-47 192.6 107 86.0
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.9e-45 185.7 107 81.3
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.2e-44 183.0 108 82.4
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 1.6e-44 182.6 107 82.2
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 3.6e-44 181.4 108 83.3
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.8e-43 179.1 108 81.5
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.8e-43 179.1 108 82.4
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 5.2e-43 177.6 107 81.3
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 2.0e-42 175.6 98 86.7
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 2.6e-42 175.3 109 79.8
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 7.6e-42 173.7 95 88.4
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 1.3e-41 172.9 107 74.8
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 3.8e-41 171.4 107 72.9
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.2e-39 166.4 107 72.0
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 1.2e-39 166.4 107 72.0
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 2.7e-39 165.2 107 71.0
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 4.6e-39 164.5 107 71.0
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 1.3e-38 162.9 108 71.3
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 6.6e-38 160.6 107 68.2
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 8.6e-38 160.2 107 69.2
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 1.1e-37 159.8 107 70.1
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.1e-37 159.8 88 87.5
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 1.5e-37 159.5 108 68.5
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 1.5e-37 159.5 107 65.4
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 4.3e-37 157.9 108 69.4
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 4.3e-37 157.9 108 67.6
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 7.3e-37 157.1 107 66.4
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.2e-36 156.4 108 67.6
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 2.1e-36 155.6 85 89.4
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 2.1e-36 155.6 85 89.4
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 3.6e-36 154.8 107 65.4
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 4.7e-36 154.5 107 67.3
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 6.2e-36 154.1 107 64.5
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 8.1e-36 153.7 109 67.0
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 1.4e-35 152.9 108 66.7
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 2.4e-35 152.1 108 66.7
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 2.4e-35 152.1 107 65.4
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 2.4e-35 152.1 107 67.3
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 2.4e-35 152.1 108 64.8
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 3.1e-35 151.8 108 63.0
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 5.2e-35 151.0 107 64.5
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 9.0e-35 150.2 107 67.3
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 1.2e-34 149.8 104 66.3
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 1.5e-34 149.4 108 64.8
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 1.5e-34 149.4 108 63.0
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 2.6e-34 148.7 108 63.9
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 4.4e-34 147.9 107 62.6
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 5.8e-34 147.5 107 63.6
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 5.8e-34 147.5 107 61.7
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 7.6e-34 147.1 107 65.4
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 7.6e-34 147.1 109 62.4
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 7.6e-34 147.1 108 63.0
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 7.6e-34 147.1 108 63.0
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.7e-33 146.0 107 65.4
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 1.7e-33 146.0 108 63.0
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 1.7e-33 146.0 108 63.9
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 2.2e-33 145.6 107 60.7
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 2.2e-33 145.6 108 65.7
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 2.9e-33 145.2 91 75.8
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 2.9e-33 145.2 107 59.8
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 3.8e-33 144.8 108 63.0
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 4.9e-33 144.4 108 63.9
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 1.1e-32 143.3 107 60.7
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 1.4e-32 142.9 108 63.9
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.4e-32 142.9 107 57.9
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 1.4e-32 142.9 107 62.6
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 1.9e-32 142.5 108 63.9
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 1.9e-32 142.5 106 60.4
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 2.4e-32 142.1 107 59.8
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 2.4e-32 142.1 106 62.3
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 3.2e-32 141.7 107 60.7
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 3.2e-32 141.7 107 59.8
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 3.2e-32 141.7 108 62.0
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 4.2e-32 141.4 108 58.3
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 4.2e-32 141.4 107 59.8
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 4.2e-32 141.4 107 58.9
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 7.1e-32 140.6 107 61.7
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 1.2e-31 139.8 108 60.2
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 1.2e-31 139.8 107 60.7
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 1.6e-31 139.4 107 57.9
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 2.1e-31 139.0 107 60.7
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 4.6e-31 137.9 107 57.9
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 4.6e-31 137.9 108 58.3
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 6.0e-31 137.5 107 59.8
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 6.0e-31 137.5 108 63.0
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.0e-30 136.7 107 58.9
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 1.7e-30 136.0 107 58.9
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 3.9e-30 134.8 108 63.0
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 3.9e-30 134.8 93 69.9
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 3.9e-30 134.8 107 54.2
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 6.6e-30 134.0 108 60.2
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 8.7e-30 133.7 108 61.1
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 1.1e-29 133.3 107 58.9
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.5e-29 132.9 107 58.9
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.5e-29 132.9 107 57.0
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 2.5e-29 132.1 107 57.0
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 2.5e-29 132.1 107 56.1
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 2.5e-29 132.1 108 60.2
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 4.3e-29 131.3 107 57.0
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 4.3e-29 131.3 107 56.1
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 5.6e-29 131.0 108 59.3
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 1.6e-28 129.4 107 53.3
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 1.6e-28 129.4 107 54.2
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 2.8e-28 128.6 108 57.4
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 3.6e-28 128.3 108 59.3
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 4.8e-28 127.9 111 57.7
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 6.2e-28 127.5 90 66.7
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.1e-27 126.7 84 70.2
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 1.4e-27 126.3 107 52.3
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 3.1e-27 125.2 84 69.0
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 6.9e-27 124.0 103 52.4
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 9.0e-27 123.6 88 67.0
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 9.0e-27 123.6 85 68.2
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 1.2e-26 123.2 86 66.3
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 1.5e-26 122.9 107 52.3
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 1.5e-26 122.9 85 68.2
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 2.0e-26 122.5 107 53.3
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 4.5e-26 121.3 99 60.6
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 5.8e-26 120.9 86 65.1
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 9.9e-26 120.2 103 58.3
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 1.7e-25 119.4 108 50.0
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 3.8e-25 118.2 107 51.4
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 8.4e-25 117.1 107 57.0
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 8.4e-25 117.1 86 64.0
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 3.2e-24 115.2 107 47.7
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 4.2e-24 114.8 85 64.7
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 7.9e-23 110.5 86 60.5
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 1.0e-22 110.2 71 63.4
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 2.3e-22 109.0 86 60.5
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 6.7e-22 107.5 87 57.5
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 1.9e-21 105.9 100 52.0
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 4.3e-21 104.8 100 47.0
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 3.7e-20 101.7 100 46.0
ClCG05G021800 Citrullus lanatus HOM05D004855 ORTHO05D005656 1.4e-19 99.8 88 54.5
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 2.4e-19 99.0 108 44.4
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 3.1e-19 98.6 65 72.3
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 3.4e-18 95.1 106 42.5
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 7.6e-18 94.0 93 50.5
SHI23843 Sapria himalayana HOM05D004855 ORTHO05D005656 1.1e-16 90.1 81 56.8
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 3.2e-16 88.6 87 48.3
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 4.2e-16 88.2 111 48.6
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 4.2e-16 88.2 87 52.9
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 4.2e-16 88.2 95 45.3
arahy.Tifrunner.gnm1.ann1.NID4K0 Arachis hypogaea HOM05D004855 ORTHO05D005656 1.5e-13 79.7 58 63.8
Peaxi162Scf00153g00101 Petunia axillaris HOM05D004855 ORTHO05D005656 1.5e-13 79.7 65 61.5
FvH4_2g12760 Fragaria vesca HOM05D004855 ORTHO05D005656 8.2e-12 73.9 74 44.6
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 1.4e-11 73.2 109 37.6
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 1.8e-11 72.8 110 39.1
Zm00001eb007300 Zea mays HOM05D004855 ORTHO05D005656 6.0e-07 57.8 74 40.5
Zm00001eb198520 Zea mays HOM05D012833 ORTHO05D005656 6.0e-07 57.8 74 40.5
AUR62041784 Chenopodium quinoa HOM05D003690 ORTHO05D137882 6.7e-06 54.3 41 61.0


User provided reference genes

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