Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 1.6e-226 789.3 454 100.0
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 8.9e-193 677.2 472 82.4
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 9.2e-190 667.2 472 83.9
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 6.6e-188 661.0 472 75.8
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 9.6e-187 657.1 472 77.3
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 1.2e-186 656.8 472 76.1
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 1.1e-185 653.7 473 76.3
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 4.0e-185 651.7 473 76.1
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 4.0e-185 651.7 473 76.1
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 1.5e-184 649.8 473 76.3
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 6.0e-181 637.9 455 76.3
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 5.6e-179 631.3 473 74.2
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 3.6e-178 628.6 472 73.7
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 2.4e-177 625.9 471 74.9
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 3.8e-175 618.6 472 73.3
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 1.4e-174 616.7 472 72.7
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 1.3e-172 610.1 479 75.8
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 1.1e-169 600.5 456 71.9
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 1.1e-169 600.5 472 75.6
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 6.9e-169 597.8 472 71.0
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 1.9e-166 589.7 472 74.6
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 2.4e-166 589.3 472 74.2
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 4.2e-166 588.6 472 75.2
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 4.8e-162 575.1 472 68.6
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 8.7e-156 554.3 472 72.7
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 3.7e-154 548.9 475 65.5
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 3.7e-146 522.3 441 65.5
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 6.9e-145 518.1 472 62.9
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 3.4e-144 515.8 468 62.4
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 2.5e-142 509.6 468 60.9
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 1.6e-141 506.9 468 60.9
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 7.9e-141 504.6 474 59.9
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 1.0e-140 504.2 474 59.3
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 3.0e-140 502.7 470 59.8
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 5.1e-140 501.9 474 59.5
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 6.7e-140 501.5 477 59.1
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 8.8e-140 501.1 480 57.3
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 8.8e-140 501.1 465 59.6
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 8.8e-140 501.1 468 60.7
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.0e-135 487.6 470 58.1
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 6.5e-135 485.0 467 59.7
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 1.4e-134 483.8 472 62.7
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 1.0e-132 477.6 470 58.1
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 1.4e-132 477.2 474 56.3
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 3.0e-132 476.1 468 56.6
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 5.7e-131 471.9 472 62.7
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 5.7e-131 471.9 478 55.4
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 2.8e-130 469.5 475 55.8
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 4.8e-130 468.8 468 61.1
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 6.3e-130 468.4 470 56.2
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 8.2e-130 468.0 470 57.0
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 1.8e-129 466.8 468 55.3
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 1.0e-127 461.1 476 54.6
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 2.2e-127 459.9 484 55.0
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.8e-127 459.1 474 57.8
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 6.5e-127 458.4 473 55.6
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 6.5e-127 458.4 482 55.2
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 2.5e-126 456.4 478 55.9
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.1e-125 453.4 474 55.5
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 2.7e-125 453.0 454 55.5
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 8.0e-125 451.4 475 55.8
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.0e-124 451.1 474 54.4
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.0e-124 451.1 474 54.4
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 1.4e-124 450.7 304 78.6
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 1.8e-124 450.3 482 54.6
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 1.8e-124 450.3 474 54.9
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 1.8e-124 450.3 469 57.4
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 1.8e-124 450.3 475 56.2
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 5.2e-124 448.7 481 55.7
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 5.2e-124 448.7 475 56.0
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 8.8e-124 448.0 476 52.9
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 8.8e-124 448.0 482 53.1
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.5e-123 447.2 468 55.1
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.5e-123 447.2 468 55.1
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 2.0e-123 446.8 310 72.6
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.3e-123 446.0 469 55.4
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 5.7e-123 445.3 475 53.3
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 6.3e-122 441.8 465 53.5
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 8.2e-122 441.4 440 60.5
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 2.4e-121 439.9 475 56.8
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 3.1e-121 439.5 477 54.1
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 7.0e-121 438.3 472 53.0
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 1.2e-120 437.6 458 54.4
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 7.7e-120 434.9 465 52.9
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 2.2e-119 433.3 436 55.7
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 8.5e-119 431.4 412 60.2
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 1.1e-118 431.0 440 59.5
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.9e-118 430.3 416 57.9
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 2.5e-118 429.9 477 53.2
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 9.4e-118 427.9 475 56.8
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 1.2e-117 427.6 423 60.8
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 2.3e-116 423.3 468 51.9
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 2.3e-116 423.3 465 53.1
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 5.2e-116 422.2 466 51.9
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 1.5e-115 420.6 333 67.6
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 7.5e-115 418.3 492 51.2
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 3.7e-114 416.0 479 53.9
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 3.7e-114 416.0 393 58.8
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 4.1e-113 412.5 472 51.9
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 5.9e-112 408.7 479 51.8
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 5.9e-112 408.7 468 52.4
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 7.7e-112 408.3 348 61.8
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.3e-111 407.5 286 75.5
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 2.3e-111 406.8 440 54.8
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 5.0e-111 405.6 479 51.4
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.3e-110 402.9 469 50.3
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 4.2e-110 402.5 475 50.3
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 9.5e-110 401.4 479 50.3
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.8e-108 397.1 466 50.6
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 1.2e-107 394.4 480 50.2
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 2.0e-107 393.7 470 48.5
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.4e-105 387.5 347 59.1
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 1.2e-104 384.4 474 48.7
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.2e-101 374.4 495 48.7
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.3e-100 370.2 304 65.1
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 3.0e-100 369.8 343 57.7
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 7.0e-97 358.6 462 46.3
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 7.0e-97 358.6 444 50.2
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 7.0e-97 358.6 477 49.3
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.1e-93 347.1 440 49.5
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.8e-92 344.0 455 47.5
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 2.3e-84 317.0 469 45.2
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 6.8e-84 315.5 241 67.2
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 2.7e-80 303.5 396 47.2
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 4.3e-78 296.2 475 41.3
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.1e-70 271.6 326 54.0
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 5.6e-70 269.2 346 41.0
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 5.6e-70 269.2 346 41.0
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.5e-62 244.6 204 60.8
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.4e-57 227.3 293 48.5
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 4.6e-56 223.0 313 46.0
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.3e-54 216.9 265 49.1
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.3e-47 194.1 133 66.9
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 2.5e-46 190.7 279 46.2
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 5.3e-44 183.0 197 53.8
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 6.5e-42 176.0 221 50.7
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 1.9e-41 174.5 116 68.1
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.3e-39 168.3 197 53.3
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 1.4e-36 158.3 106 71.7
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 6.5e-18 96.3 181 41.4
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.8e-15 88.2 58 72.4
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 1.4e-12 78.6 78 55.1
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.2e-11 75.5 133 39.1
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 5.5e-09 66.6 112 46.4


User provided reference genes

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