Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G18372 Arabidopsis thaliana HOM05D007268 ORTHO05D009152 7.9e-58 226.9 113 100.0
AL7G36000 Arabidopsis lyrata HOM05D007268 ORTHO05D009152 2.2e-55 218.8 113 94.7
Sp7g15690 Schrenkiella parvula HOM05D007268 ORTHO05D009152 9.1e-54 213.4 113 92.9
Thhalv10026609m.g Eutrema salsugineum HOM05D007268 ORTHO05D009152 3.5e-53 211.5 113 92.0
CARHR225150 Cardamine hirsuta HOM05D007268 ORTHO05D009152 2.2e-52 208.8 113 89.4
BcaC06g30591 Brassica carinata HOM05D007268 ORTHO05D009152 3.8e-52 208.0 112 89.3
BcaNung02699 Brassica carinata HOM05D007268 ORTHO05D009152 1.5e-51 206.1 112 88.4
C07p49660 Brassica napus HOM05D007268 ORTHO05D009152 1.5e-51 206.1 112 88.4
BolC7t45467H Brassica oleracea HOM05D007268 ORTHO05D009152 1.5e-51 206.1 112 88.4
BcaC06g30594 Brassica carinata HOM05D007268 ORTHO05D009152 9.4e-51 203.4 113 88.5
BcaNung00009 Brassica carinata HOM05D007268 ORTHO05D009152 9.4e-51 203.4 113 88.5
Carub.0007s2291 Capsella rubella HOM05D007268 ORTHO05D009152 1.0e-49 199.9 111 89.2
A01p10290 Brassica napus HOM05D007268 ORTHO05D009152 5.2e-49 197.6 114 86.8
BraA01t00976Z Brassica rapa HOM05D007268 ORTHO05D009152 5.2e-49 197.6 114 86.8
BcaC09g51527 Brassica carinata HOM05D007268 ORTHO05D009152 1.5e-48 196.1 115 85.2
A03p51230 Brassica napus HOM05D007268 ORTHO05D009152 5.7e-48 194.1 112 85.7
BraA03t14206Z Brassica rapa HOM05D007268 ORTHO05D009152 7.5e-48 193.7 112 85.7
C01p12240 Brassica napus HOM05D007268 ORTHO05D009152 1.7e-47 192.6 115 84.3
BolC1t01200H Brassica oleracea HOM05D007268 ORTHO05D009152 1.7e-47 192.6 115 84.3
Aa31LG6G1080 Aethionema arabicum HOM05D007268 ORTHO05D009152 5.3e-46 187.6 118 81.4
THA.LOC104798395 Tarenaya hassleriana HOM05D007268 ORTHO05D009152 1.3e-44 183.0 116 80.2
TPR.G26254 Trifolium pratense HOM05D007268 ORTHO05D009152 4.2e-43 177.9 112 75.9
Psat1g188600 Pisum sativum HOM05D007268 ORTHO05D009152 5.5e-43 177.6 112 75.0
Ca_00530_v3 Cicer arietinum L. HOM05D007268 ORTHO05D009152 3.6e-42 174.9 111 75.7
Medtr2g019100 Medicago truncatula HOM05D007268 ORTHO05D009152 4.7e-42 174.5 110 74.5
Manes.17G072200 Manihot esculenta HOM05D007268 ORTHO05D009152 1.8e-41 172.6 115 76.5
TWI53G0467 Tripterygium wilfordii HOM05D007268 ORTHO05D009152 2.3e-41 172.2 114 71.1
Cfa000925 Carpinus fangiana HOM05D007268 ORTHO05D009152 2.0e-40 169.1 113 73.5
Duzib160G0929 Durio zibethinus HOM05D007268 ORTHO05D009152 5.7e-40 167.5 112 72.3
Gohir.A10G042300 Gossypium hirsutum HOM05D007268 ORTHO05D009152 1.7e-39 166.0 95 76.8
Sabra15G0149200 Salix brachista HOM05D007268 ORTHO05D009152 1.7e-39 166.0 105 77.1
Lalb_Chr18g0055321 Lupinus albus HOM05D007268 ORTHO05D009152 2.2e-39 165.6 99 76.8
Gorai.011G045800 Gossypium raimondii HOM05D007268 ORTHO05D009152 2.8e-39 165.2 94 77.7
Duzib235G0597 Durio zibethinus HOM05D007268 ORTHO05D009152 4.8e-39 164.5 95 77.9
PGR031G1097 Punica granatum HOM05D007268 ORTHO05D009152 4.8e-39 164.5 112 71.4
Potri.015G138100 Populus trichocarpa HOM05D007268 ORTHO05D009152 6.3e-39 164.1 106 75.5
Gohir.D10G043200 Gossypium hirsutum HOM05D007268 ORTHO05D009152 8.3e-39 163.7 94 76.6
Thecc.06G148000 Theobroma cacao HOM05D007268 ORTHO05D009152 8.3e-39 163.7 112 70.5
Ciclev10017240m.g Citrus clementina HOM05D007268 ORTHO05D009152 3.1e-38 161.8 115 70.4
CiPaw.09G121900 Carya illinoinensis HOM05D007268 ORTHO05D009152 7.0e-38 160.6 111 70.3
MD05G1281500 Malus domestica HOM05D007268 ORTHO05D009152 7.0e-38 160.6 108 72.2
Hund21552 Selenicereus undatus HOM05D007268 ORTHO05D009152 9.1e-38 160.2 94 73.4
Eucgr.E02425 Eucalyptus grandis HOM05D007268 ORTHO05D009152 1.2e-37 159.8 113 69.9
Sed0026056 Sechium edule HOM05D007268 ORTHO05D009152 1.2e-37 159.8 112 69.6
Atru.chr10.1171 Acer truncatum HOM05D007268 ORTHO05D009152 2.0e-37 159.1 116 70.7
Glyma.13G219500 Glycine max HOM05D007268 ORTHO05D009152 2.7e-37 158.7 96 79.2
MBI02_g20985_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 2.7e-37 158.7 90 80.0
Ah.04g158630 Amaranthus hybridus HOM05D007268 ORTHO05D009152 5.9e-37 157.5 97 71.1
RcHm_v2.0_Chr5g0014441 Rosa chinensis HOM05D007268 ORTHO05D009152 7.7e-37 157.1 121 65.3
Dinv32234 Davidia involucrata HOM05D007268 ORTHO05D009152 1.3e-36 156.4 113 68.1
QL05p055849 Quercus lobata HOM05D007268 ORTHO05D009152 1.3e-36 156.4 113 69.9
Prupe.4G083100 Prunus persica HOM05D007268 ORTHO05D009152 1.7e-36 156.0 114 68.4
vmacro03337 Vaccinium macrocarpon HOM05D007268 ORTHO05D009152 1.7e-36 156.0 112 68.8
Sc24g0001710 Simmondsia chinensis HOM05D007268 ORTHO05D009152 2.2e-36 155.6 92 76.1
CiPaw.10G090400 Carya illinoinensis HOM05D007268 ORTHO05D009152 2.9e-36 155.2 112 69.6
FvH4_3g05282 Fragaria vesca HOM05D007268 ORTHO05D009152 2.9e-36 155.2 120 65.0
Rhsim13G0115400 Rhododendron simsii HOM05D007268 ORTHO05D009152 5.0e-36 154.5 112 68.8
Atru.chr4.1816 Acer truncatum HOM05D007268 ORTHO05D009152 8.5e-36 153.7 116 69.8
CSS0021934 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 8.5e-36 153.7 115 68.7
CsaV3_1G004630 Cucumis sativus L. HOM05D007268 ORTHO05D009152 8.5e-36 153.7 112 67.9
AUR62006739 Chenopodium quinoa HOM05D007268 ORTHO05D009152 1.1e-35 153.3 97 71.1
Aqoxy4G02868 Aquilegia oxysepala HOM05D007268 ORTHO05D009152 1.5e-35 152.9 101 68.3
Nn3g20236 Nelumbo nucifera HOM05D007268 ORTHO05D009152 1.5e-35 152.9 113 66.4
Oeu030940.1 Olea europaea HOM05D007268 ORTHO05D009152 1.5e-35 152.9 112 65.2
CSS0030281 Camellia sinensis var. sinensis HOM05D007268 ORTHO05D009152 1.9e-35 152.5 115 67.8
ClCG03G006700 Citrullus lanatus HOM05D007268 ORTHO05D009152 3.2e-35 151.8 112 66.1
Phvul.006G166200 Phaseolus vulgaris HOM05D007268 ORTHO05D009152 9.5e-35 150.2 87 80.5
Solyc08g048540.2 Solanum lycopersicum HOM05D007268 ORTHO05D009152 1.6e-34 149.4 89 77.5
DCAR_003898 Daucus carota HOM05D007268 ORTHO05D009152 2.8e-34 148.7 88 73.9
Actinidia32339 Actinidia chinensis HOM05D007268 ORTHO05D009152 4.7e-34 147.9 113 68.1
Sopen08g010950 Solanum pennellii HOM05D007268 ORTHO05D009152 4.7e-34 147.9 87 78.2
FAN25G0109 Fragaria x ananassa HOM05D007268 ORTHO05D009152 6.1e-34 147.5 121 62.0
Lsat_1_v5_gn_7_27661 Lactuca sativa HOM05D007268 ORTHO05D009152 6.1e-34 147.5 88 77.3
CAN.G42.16 Capsicum annuum HOM05D007268 ORTHO05D009152 1.8e-33 146.0 96 70.8
PGSC0003DMG400029871 Solanum tuberosum HOM05D007268 ORTHO05D009152 5.2e-33 144.4 89 75.3
GSVIVG01035542001 Vitis vinifera HOM05D007268 ORTHO05D009152 8.8e-33 143.7 76 85.5
CANSAT21G2169 Cannabis sativa HOM05D007268 ORTHO05D009152 1.5e-32 142.9 108 63.9
CAN.G500.67 Capsicum annuum HOM05D007268 ORTHO05D009152 1.5e-32 142.9 96 70.8
ECA236G4633 Erigeron canadensis HOM05D007268 ORTHO05D009152 2.0e-32 142.5 106 64.2
SGA_v2.0_scaffold1G00193 Striga asiatica HOM05D007268 ORTHO05D009152 4.4e-32 141.4 88 69.3
Migut.M00895 Erythranthe guttata HOM05D007268 ORTHO05D009152 5.7e-32 141.0 102 61.8
MSTRG.7499 Avicennia marina HOM05D007268 ORTHO05D009152 9.8e-32 140.2 101 63.4
MBI02_g43299_MAGBIO Magnolia biondii HOM05D007268 ORTHO05D009152 1.7e-31 139.4 76 82.9
Zm00001eb273860 Zea mays HOM05D007268 ORTHO05D009152 2.8e-31 138.7 91 68.1
ATR0618G449 Amborella trichopoda HOM05D007268 ORTHO05D009152 1.1e-30 136.7 86 68.6
PSO541G1787 Papaver somniferum HOM05D007268 ORTHO05D009152 2.4e-30 135.6 116 61.2
unitig_92.g28163 Utricularia gibba HOM05D007268 ORTHO05D009152 2.4e-30 135.6 114 59.6
Zm00001eb224700 Zea mays HOM05D007268 ORTHO05D009152 3.1e-30 135.2 94 64.9
unitig_37.g12097 Utricularia gibba HOM05D007268 ORTHO05D009152 7.0e-30 134.0 105 61.0
FAN16G0810 Fragaria x ananassa HOM05D007268 ORTHO05D009152 9.2e-30 133.7 107 64.5
HanXRQChr04g0115721 Helianthus annuus HOM05D007268 ORTHO05D009152 9.2e-30 133.7 77 79.2
EL10Ac4g09469 Beta vulgaris HOM05D007268 ORTHO05D009152 1.2e-29 133.3 79 74.7
Os06g0677600 Oryza sativa ssp. japonica HOM05D007268 ORTHO05D009152 1.6e-29 132.9 105 61.0
SalBow8G1886 Salvia bowleyana HOM05D007268 ORTHO05D009152 2.0e-29 132.5 76 78.9
Cc09_g08780 Coffea canephora HOM05D007268 ORTHO05D009152 3.5e-29 131.7 76 80.3
HPP92_004157 Vanilla planifolia HOM05D007268 ORTHO05D009152 5.9e-29 131.0 73 80.8
arahy.Tifrunner.gnm1.ann1.H0S66A Arachis hypogaea HOM05D007268 ORTHO05D009152 2.3e-28 129.0 93 69.9
Solyc08g048520.1 Solanum lycopersicum HOM05D007268 ORTHO05D009152 1.9e-27 125.9 96 61.5
FAN21G3321 Fragaria x ananassa HOM05D007268 ORTHO05D009152 2.5e-27 125.6 101 64.4
Pp3c2_29020 Physcomitrium patens HOM05D007268 ORTHO05D009152 2.9e-23 112.1 97 49.5
SEGI_36221 Sequoiadendron giganteum HOM05D007268 ORTHO05D009152 1.1e-22 110.2 97 51.5
Mapoly0012s0147 Marchantia polymorpha HOM05D007268 ORTHO05D009152 4.1e-22 108.2 110 47.3
SMO358G0115 Selaginella moellendorffii HOM05D007268 ORTHO05D009152 2.7e-21 105.5 87 54.0
SHI24845 Sapria himalayana HOM05D007268 ORTHO05D009152 1.4e-17 93.2 76 55.3
Nitab4.5_0005488g0010 Nicotiana tabacum HOM05D007268 ORTHO05D009152 2.6e-16 89.0 55 76.4
CBR_g29441 Chara braunii HOM05D007268 ORTHO05D009152 6.0e-13 77.8 110 35.5
PRCOL_00005812 Prasinoderma coloniale HOM05D007268 ORTHO05D009152 2.5e-11 72.4 112 39.3
MCO15G665 Micromonas commoda HOM05D007268 ORTHO05D009152 9.2e-06 53.9 81 37.0


User provided reference genes

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