Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G17940 Arabidopsis thaliana HOM05D006310 ORTHO05D007768 4.6e-91 338.6 275 100.0
AL7G36570 Arabidopsis lyrata HOM05D006310 ORTHO05D007768 5.2e-79 298.5 186 90.9
Carub.0007s2340 Capsella rubella HOM05D006310 ORTHO05D007768 1.9e-68 263.5 192 83.9
Sp7g16170 Schrenkiella parvula HOM05D006310 ORTHO05D007768 8.7e-66 254.6 189 80.4
CARHR224680 Cardamine hirsuta HOM05D006310 ORTHO05D007768 4.3e-65 252.3 188 80.3
Thhalv10026016m.g Eutrema salsugineum HOM05D006310 ORTHO05D007768 7.6e-54 214.9 191 73.3
BolC8t48532H Brassica oleracea HOM05D006310 ORTHO05D007768 8.7e-50 201.4 190 71.1
A08p13440 Brassica napus HOM05D006310 ORTHO05D007768 7.4e-49 198.4 190 71.6
BraA08t33321Z Brassica rapa HOM05D006310 ORTHO05D007768 1.3e-48 197.6 190 71.6
BcaC07g38109 Brassica carinata HOM05D006310 ORTHO05D007768 4.0e-47 192.6 182 68.1
Aa31LG6G690 Aethionema arabicum HOM05D006310 ORTHO05D007768 2.7e-43 179.9 189 69.8
BcaNung00042 Brassica carinata HOM05D006310 ORTHO05D007768 3.5e-43 179.5 187 63.6
BcaB04g18451 Brassica carinata HOM05D006310 ORTHO05D007768 6.0e-43 178.7 188 65.4
C01p11780 Brassica napus HOM05D006310 ORTHO05D007768 8.2e-40 168.3 186 64.5
A01p09980 Brassica napus HOM05D006310 ORTHO05D007768 3.1e-39 166.4 187 56.7
BcaC09g51583 Brassica carinata HOM05D006310 ORTHO05D007768 6.9e-39 165.2 186 64.0
BolC1t01140H Brassica oleracea HOM05D006310 ORTHO05D007768 1.0e-37 161.4 186 62.4
BraA01t00942Z Brassica rapa HOM05D006310 ORTHO05D007768 6.5e-37 158.7 187 58.3
THA.LOC104827750 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 7.2e-36 155.2 199 53.8
THA.LOC104806719 Tarenaya hassleriana HOM05D006310 ORTHO05D007768 1.6e-35 154.1 198 53.0
Haze_08202 Corylus avellana HOM05D006310 ORTHO05D007768 1.3e-21 107.8 201 40.8
Dinv28973 Davidia involucrata HOM05D006310 ORTHO05D007768 2.9e-21 106.7 223 36.8
Dinv25232 Davidia involucrata HOM05D006310 ORTHO05D007768 5.0e-21 105.9 223 42.2
Cfa012467 Carpinus fangiana HOM05D006310 ORTHO05D007768 4.7e-19 99.4 200 41.0
CiPaw.12G065800 Carya illinoinensis HOM05D006310 ORTHO05D007768 1.8e-18 97.4 208 42.3
COL.COLO4_16996 Corchorus olitorius HOM05D006310 ORTHO05D007768 2.3e-18 97.1 212 37.3
QL12p004739 Quercus lobata HOM05D006310 ORTHO05D007768 3.0e-18 96.7 200 39.0
Potri.001G140500 Populus trichocarpa HOM05D006310 ORTHO05D007768 3.9e-18 96.3 195 37.9
Actinidia14793 Actinidia chinensis HOM05D006310 ORTHO05D007768 5.1e-18 95.9 208 36.5
Manes.15G192960 Manihot esculenta HOM05D006310 ORTHO05D007768 5.1e-18 95.9 196 40.8
Atru.chr6.1649 Acer truncatum HOM05D006310 ORTHO05D007768 8.8e-18 95.1 212 38.7
Cpa.g.sc90.63 Carica papaya HOM05D006310 ORTHO05D007768 8.8e-18 95.1 208 36.5
Gohir.A08G155500 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.1e-17 94.7 204 36.8
PGSC0003DMG400017523 Solanum tuberosum HOM05D006310 ORTHO05D007768 1.1e-17 94.7 227 36.1
CSS0006923 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 1.5e-17 94.4 211 37.0
Sabra01G0109300 Salix brachista HOM05D006310 ORTHO05D007768 1.5e-17 94.4 194 37.6
Nitab4.5_0003625g0020 Nicotiana tabacum HOM05D006310 ORTHO05D007768 4.4e-17 92.8 212 34.9
Actinidia25977 Actinidia chinensis HOM05D006310 ORTHO05D007768 5.7e-17 92.4 196 41.3
Lj2A236G56 Lonicera japonica HOM05D006310 ORTHO05D007768 5.7e-17 92.4 209 42.6
CSS0048597 Camellia sinensis var. sinensis HOM05D006310 ORTHO05D007768 7.4e-17 92.0 211 39.3
Gohir.D08G176100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 1.7e-16 90.9 203 36.0
Sopen08g025280 Solanum pennellii HOM05D006310 ORTHO05D007768 1.7e-16 90.9 227 36.6
vmacro00314 Vaccinium macrocarpon HOM05D006310 ORTHO05D007768 2.2e-16 90.5 200 35.5
Thecc.03G224800 Theobroma cacao HOM05D006310 ORTHO05D007768 2.8e-16 90.1 210 39.0
Gorai.004G183900 Gossypium raimondii HOM05D006310 ORTHO05D007768 3.7e-16 89.7 194 36.1
Hma1.2p1_0303F.1_g118950 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 3.7e-16 89.7 210 42.4
Solyc08g076730.4 Solanum lycopersicum HOM05D006310 ORTHO05D007768 4.8e-16 89.4 227 36.1
CANSAT21G0851 Cannabis sativa HOM05D006310 ORTHO05D007768 6.3e-16 89.0 193 44.0
Oeu006245.1 Olea europaea HOM05D006310 ORTHO05D007768 1.1e-15 88.2 207 36.2
Duzib205G0324 Durio zibethinus HOM05D006310 ORTHO05D007768 1.4e-15 87.8 215 35.3
Gorai.007G033000 Gossypium raimondii HOM05D006310 ORTHO05D007768 1.4e-15 87.8 213 36.6
Gohir.D11G030100 Gossypium hirsutum HOM05D006310 ORTHO05D007768 4.1e-15 86.3 213 36.2
Actinidia03362 Actinidia chinensis HOM05D006310 ORTHO05D007768 7.0e-15 85.5 190 37.9
Duzib084G0468 Durio zibethinus HOM05D006310 ORTHO05D007768 9.1e-15 85.1 215 36.3
TWI15G1132 Tripterygium wilfordii HOM05D006310 ORTHO05D007768 9.1e-15 85.1 206 35.9
CAN.G298.28 Capsicum annuum HOM05D006310 ORTHO05D007768 1.2e-14 84.7 203 34.0
Eucgr.D02211 Eucalyptus grandis HOM05D006310 ORTHO05D007768 1.2e-14 84.7 140 50.0
Nitab4.5_0000127g0100 Nicotiana tabacum HOM05D006310 ORTHO05D007768 1.2e-14 84.7 219 32.4
Rhsim11G0017700 Rhododendron simsii HOM05D006310 ORTHO05D007768 1.2e-14 84.7 190 36.8
MBI04_g20344_MAGBIO Magnolia biondii HOM05D006310 ORTHO05D007768 1.6e-14 84.3 226 38.9
PGR031G3884 Punica granatum HOM05D006310 ORTHO05D007768 7.7e-14 82.0 206 40.3
Cc08_g03010 Coffea canephora HOM05D006310 ORTHO05D007768 1.3e-13 81.3 202 34.2
arahy.Tifrunner.gnm1.ann1.P6RCLW Arachis hypogaea HOM05D006310 ORTHO05D007768 6.5e-13 79.0 201 35.8
arahy.Tifrunner.gnm1.ann1.U64MAA Arachis hypogaea HOM05D006310 ORTHO05D007768 6.5e-13 79.0 201 35.8
Lalb_Chr05g0215911 Lupinus albus HOM05D006310 ORTHO05D007768 6.5e-13 79.0 198 37.4
CiPaw.11G095600 Carya illinoinensis HOM05D006310 ORTHO05D007768 8.5e-13 78.6 195 34.9
Actinidia09184 Actinidia chinensis HOM05D006310 ORTHO05D007768 1.1e-12 78.2 185 35.7
MD06G1036900 Malus domestica HOM05D006310 ORTHO05D007768 2.5e-12 77.0 189 36.0
Gohir.A11G031400 Gossypium hirsutum HOM05D006310 ORTHO05D007768 3.2e-12 76.6 212 34.0
PSO782G4606 Papaver somniferum HOM05D006310 ORTHO05D007768 3.2e-12 76.6 225 34.2
GSVIVG01013133001 Vitis vinifera HOM05D006310 ORTHO05D007768 5.5e-12 75.9 123 40.7
CsaV3_3G049010 Cucumis sativus L. HOM05D006310 ORTHO05D007768 7.2e-12 75.5 200 32.5
Hma1.2p1_1379F.1_g279220 Hydrangea macrophylla HOM05D006310 ORTHO05D007768 9.4e-12 75.1 188 35.6
PSO063G6445 Papaver somniferum HOM05D006310 ORTHO05D007768 1.2e-11 74.7 216 34.7
DCAR_008251 Daucus carota HOM05D006310 ORTHO05D007768 1.6e-11 74.3 196 36.7
TAR629G1434 Trochodendron aralioides HOM05D006310 ORTHO05D007768 2.1e-11 73.9 226 36.7
ATR0665G126 Amborella trichopoda HOM05D006310 ORTHO05D007768 2.7e-11 73.6 159 35.2
Medtr5g029910 Medicago truncatula HOM05D006310 ORTHO05D007768 4.7e-11 72.8 198 36.4
Glyma.09G205800 Glycine max HOM05D006310 ORTHO05D007768 8.0e-11 72.0 200 32.5
Prupe.5G032400 Prunus persica HOM05D006310 ORTHO05D007768 8.0e-11 72.0 193 33.2
HanXRQChr06g0167641 Helianthus annuus HOM05D006310 ORTHO05D007768 3.0e-10 70.1 200 35.5
Lsat_1_v5_gn_3_18800 Lactuca sativa HOM05D006310 ORTHO05D007768 3.0e-10 70.1 202 39.6
SGA_v2.0_scaffold20G09266 Striga asiatica HOM05D006310 ORTHO05D007768 4.0e-10 69.7 193 35.2
Ca_25198_v3 Cicer arietinum L. HOM05D006310 ORTHO05D007768 6.7e-10 68.9 201 31.8
ClCG09G011810 Citrullus lanatus HOM05D006310 ORTHO05D007768 3.3e-09 66.6 201 32.3
MELO3C003424.2 Cucumis melo HOM05D006310 ORTHO05D007768 3.3e-09 66.6 191 29.8
VMungo1080G0874 Vigna mungo HOM05D006310 ORTHO05D007768 3.3e-09 66.6 192 31.2
Glyma.01G017000 Glycine max HOM05D006310 ORTHO05D007768 4.4e-09 66.2 200 34.0
Psat2g137200 Pisum sativum HOM05D006310 ORTHO05D007768 5.7e-09 65.9 197 36.0
FAN08G3522 Fragaria x ananassa HOM05D006310 ORTHO05D007768 1.3e-08 64.7 192 32.3
MSTRG.13750 Avicennia marina HOM05D006310 ORTHO05D007768 1.7e-08 64.3 190 32.1
FAN18G0493 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.2e-08 63.9 192 31.8
FAN18G3281 Fragaria x ananassa HOM05D006310 ORTHO05D007768 2.2e-08 63.9 192 31.8
Eucgr.E00268 Eucalyptus grandis HOM05D006310 ORTHO05D007768 2.8e-08 63.5 46 65.2
Migut.E00791 Erythranthe guttata HOM05D006310 ORTHO05D007768 4.8e-08 62.8 200 40.0
Eucgr.E00267 Eucalyptus grandis HOM05D006310 ORTHO05D007768 4.8e-08 62.8 129 38.0
Hund14348 Selenicereus undatus HOM05D006310 ORTHO05D007768 4.8e-08 62.8 189 32.8
FvH4_5g22450 Fragaria vesca HOM05D006310 ORTHO05D007768 6.3e-08 62.4 192 31.2
HanXRQChr17g0536151 Helianthus annuus HOM05D006310 ORTHO05D007768 6.3e-08 62.4 176 31.2
ECA246G3187 Erigeron canadensis HOM05D006310 ORTHO05D007768 8.2e-08 62.0 200 33.0
FAN04G1670 Fragaria x ananassa HOM05D006310 ORTHO05D007768 8.2e-08 62.0 192 31.8
VMungo1215G2715 Vigna mungo HOM05D006310 ORTHO05D007768 1.8e-07 60.8 193 32.1
Phvul.002G140000 Phaseolus vulgaris HOM05D006310 ORTHO05D007768 2.4e-07 60.5 190 32.1
BcaC08g47574 Brassica carinata HOM05D001903 ORTHO05D001847 3.1e-07 60.1 126 37.3
C06p54220 Brassica napus HOM05D001903 ORTHO05D001847 3.1e-07 60.1 126 37.3
BolC6t40435H Brassica oleracea HOM05D001903 ORTHO05D001847 4.1e-07 59.7 126 37.3
Lj2g0018875 Lotus japonicus HOM05D006310 ORTHO05D007768 4.1e-07 59.7 196 31.6
HPP92_014659 Vanilla planifolia HOM05D006310 ORTHO05D007768 4.1e-07 59.7 130 33.8
Sed0010075 Sechium edule HOM05D006310 ORTHO05D007768 5.3e-07 59.3 205 36.6
Ah.07g200600 Amaranthus hybridus HOM05D006310 ORTHO05D007768 9.1e-07 58.5 184 31.0
Nn1g00145 Nelumbo nucifera HOM05D006310 ORTHO05D007768 9.1e-07 58.5 210 35.7
CDE11G1127 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 1.6e-06 57.8 217 36.4
RcHm_v2.0_Chr7g0210241 Rosa chinensis HOM05D006310 ORTHO05D007768 1.6e-06 57.8 42 59.5
A07p45380 Brassica napus HOM05D001903 ORTHO05D001847 2.0e-06 57.4 127 37.8
CDE02G1298 Ceratophyllum demersum HOM05D006310 ORTHO05D007768 2.7e-06 57.0 214 36.0
Nn3g19447 Nelumbo nucifera HOM05D006310 ORTHO05D007768 3.5e-06 56.6 45 62.2
Aqoxy3G02279 Aquilegia oxysepala HOM05D006310 ORTHO05D007768 5.9e-06 55.8 216 34.7
EL10Ac5g12081 Beta vulgaris HOM05D006310 ORTHO05D007768 5.9e-06 55.8 192 40.1
BcaB02g08699 Brassica carinata HOM05D001903 ORTHO05D001847 7.7e-06 55.5 84 48.8
Gorai.013G234200 Gossypium raimondii HOM05D001903 ORTHO05D001847 7.7e-06 55.5 198 31.3


User provided reference genes

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