Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G17910 Arabidopsis thaliana HOM05D004949 ORTHO05D006006 1.4e-240 835.9 435 100.0
AL7G36600 Arabidopsis lyrata HOM05D004949 ORTHO05D006006 3.2e-216 755.0 432 92.6
Carub.0007s2343 Capsella rubella HOM05D004949 ORTHO05D006006 4.7e-215 751.1 432 91.2
Thhalv10001430m.g Eutrema salsugineum HOM05D004949 ORTHO05D006006 6.3e-212 740.7 431 89.3
BraA03t11719Z Brassica rapa HOM05D004949 ORTHO05D006006 1.2e-210 736.5 431 88.9
BcaB01g03270 Brassica carinata HOM05D004949 ORTHO05D006006 7.7e-210 733.8 431 87.9
BcaC01g05139 Brassica carinata HOM05D004949 ORTHO05D006006 1.7e-209 732.6 431 88.9
BolC3t15350H Brassica oleracea HOM05D004949 ORTHO05D006006 1.7e-209 732.6 431 88.9
C03p30030 Brassica napus HOM05D004949 ORTHO05D006006 6.5e-209 730.7 431 87.9
A03p25190 Brassica napus HOM05D004949 ORTHO05D006006 1.5e-205 719.5 431 87.0
CARHR224640 Cardamine hirsuta HOM05D004949 ORTHO05D006006 2.0e-205 719.2 431 88.2
Sp4g27350 Schrenkiella parvula HOM05D004949 ORTHO05D006006 2.9e-201 705.3 434 86.4
Aa31LG6G660 Aethionema arabicum HOM05D004949 ORTHO05D006006 1.7e-196 689.5 431 84.2
THA.LOC104812834 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 2.3e-169 599.4 397 78.3
COL.COLO4_17003 Corchorus olitorius HOM05D004949 ORTHO05D006006 3.3e-136 489.2 436 60.8
Duzib068G0117 Durio zibethinus HOM05D004949 ORTHO05D006006 4.3e-136 488.8 434 59.9
Phvul.003G284400 Phaseolus vulgaris HOM05D004949 ORTHO05D006006 2.4e-134 483.0 432 58.8
TWI15G0747 Tripterygium wilfordii HOM05D004949 ORTHO05D006006 2.4e-134 483.0 431 57.8
Atru.chr6.1656 Acer truncatum HOM05D004949 ORTHO05D006006 4.0e-134 482.3 411 60.8
Potri.003G093300 Populus trichocarpa HOM05D004949 ORTHO05D006006 3.4e-133 479.2 436 59.4
Lj4g0000928 Lotus japonicus HOM05D004949 ORTHO05D006006 1.9e-131 473.4 434 58.8
Prupe.5G033200 Prunus persica HOM05D004949 ORTHO05D006006 9.3e-131 471.1 436 58.3
Sabra03G0062700 Salix brachista HOM05D004949 ORTHO05D006006 1.6e-130 470.3 411 60.3
Manes.17G017708 Manihot esculenta HOM05D004949 ORTHO05D006006 2.1e-130 469.9 434 57.6
arahy.Tifrunner.gnm1.ann1.78T75P Arachis hypogaea HOM05D004949 ORTHO05D006006 1.8e-129 466.8 433 58.7
Nn1g00131 Nelumbo nucifera HOM05D004949 ORTHO05D006006 8.7e-129 464.5 437 56.1
CANSAT21G1226 Cannabis sativa HOM05D004949 ORTHO05D006006 7.4e-128 461.5 432 56.7
Rhsim11G0048300 Rhododendron simsii HOM05D004949 ORTHO05D006006 7.4e-128 461.5 432 56.7
Eucgr.E00272 Eucalyptus grandis HOM05D004949 ORTHO05D006006 1.3e-127 460.7 434 56.5
TAR375G0033 Trochodendron aralioides HOM05D004949 ORTHO05D006006 2.8e-127 459.5 442 56.3
GSVIVG01013143001 Vitis vinifera HOM05D004949 ORTHO05D006006 3.7e-127 459.1 445 56.0
Cfa012457 Carpinus fangiana HOM05D004949 ORTHO05D006006 8.2e-127 458.0 437 57.4
Lalb_Chr05g0228811 Lupinus albus HOM05D004949 ORTHO05D006006 1.8e-126 456.8 433 55.9
Actinidia25973 Actinidia chinensis HOM05D004949 ORTHO05D006006 6.9e-126 454.9 429 58.0
CsaV3_3G001560 Cucumis sativus L. HOM05D004949 ORTHO05D006006 6.9e-126 454.9 438 55.9
FAN13G2248 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.0e-125 453.4 435 54.9
Ciclev10031452m.g Citrus clementina HOM05D004949 ORTHO05D006006 2.6e-125 453.0 432 54.2
FAN18G3647 Fragaria x ananassa HOM05D004949 ORTHO05D006006 2.6e-125 453.0 437 54.7
Sed0027872 Sechium edule HOM05D004949 ORTHO05D006006 3.4e-125 452.6 438 54.8
RcHm_v2.0_Chr7g0210111 Rosa chinensis HOM05D004949 ORTHO05D006006 1.3e-124 450.7 433 55.0
ECA233G0790 Erigeron canadensis HOM05D004949 ORTHO05D006006 2.9e-124 449.5 435 55.4
VMungo1309G0709 Vigna mungo HOM05D004949 ORTHO05D006006 3.8e-124 449.1 420 56.0
FvH4_5g22370 Fragaria vesca HOM05D004949 ORTHO05D006006 4.9e-124 448.7 437 54.2
PGR042G3443 Punica granatum HOM05D004949 ORTHO05D006006 1.1e-123 447.6 436 56.4
PSO782G4101 Papaver somniferum HOM05D004949 ORTHO05D006006 2.5e-123 446.4 413 56.2
Cc08_g02960 Coffea canephora HOM05D004949 ORTHO05D006006 3.2e-123 446.0 434 55.8
HanXRQChr02g0049971 Helianthus annuus HOM05D004949 ORTHO05D006006 1.6e-122 443.7 435 53.6
Gorai.003G183400 Gossypium raimondii HOM05D004949 ORTHO05D006006 2.1e-122 443.4 396 58.1
PSO063G1669 Papaver somniferum HOM05D004949 ORTHO05D006006 2.1e-122 443.4 413 56.2
VMungo0251G0718 Vigna mungo HOM05D004949 ORTHO05D006006 4.6e-122 442.2 407 57.5
FAN18G2708 Fragaria x ananassa HOM05D004949 ORTHO05D006006 7.9e-122 441.4 450 52.9
Gohir.A03G000052 Gossypium hirsutum HOM05D004949 ORTHO05D006006 7.9e-122 441.4 396 58.1
Sc01g0007370 Simmondsia chinensis HOM05D004949 ORTHO05D006006 1.9e-120 436.8 444 54.5
Lsat_1_v5_gn_6_4100 Lactuca sativa HOM05D004949 ORTHO05D006006 5.7e-120 435.3 433 55.2
CSS0006782 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 1.6e-119 433.7 433 55.4
Psat4g121520 Pisum sativum HOM05D004949 ORTHO05D006006 1.6e-119 433.7 376 60.4
Zm00001eb018410 Zea mays HOM05D004949 ORTHO05D006006 3.1e-118 429.5 410 52.0
Aqoxy3G01363 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 5.3e-118 428.7 437 55.6
Medtr8g066760 Medicago truncatula HOM05D004949 ORTHO05D006006 5.3e-118 428.7 432 55.3
Hma1.2p1_0120F.1_g057130 Hydrangea macrophylla HOM05D004949 ORTHO05D006006 6.9e-118 428.3 437 53.3
Aqoxy3G00659 Aquilegia oxysepala HOM05D004949 ORTHO05D006006 1.5e-117 427.2 436 54.8
Solyc08g076810.4 Solanum lycopersicum HOM05D004949 ORTHO05D006006 5.9e-117 425.2 434 51.6
Sopen08g025330 Solanum pennellii HOM05D004949 ORTHO05D006006 7.7e-117 424.9 434 51.8
CAN.G298.24 Capsicum annuum HOM05D004949 ORTHO05D006006 2.9e-116 422.9 441 51.2
Nitab4.5_0002773g0060 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.4e-115 420.6 421 52.0
Os03g0378200 Oryza sativa ssp. japonica HOM05D004949 ORTHO05D006006 7.9e-114 414.8 434 52.3
CSS0020726 Camellia sinensis var. sinensis HOM05D004949 ORTHO05D006006 2.3e-113 413.3 415 55.7
Zm00001eb392220 Zea mays HOM05D004949 ORTHO05D006006 5.7e-112 408.7 391 53.2
arahy.Tifrunner.gnm1.ann1.M3M86A Arachis hypogaea HOM05D004949 ORTHO05D006006 1.8e-110 403.7 433 53.3
ATR0665G211 Amborella trichopoda HOM05D004949 ORTHO05D006006 1.5e-109 400.6 409 51.8
Haze_08210 Corylus avellana HOM05D004949 ORTHO05D006006 1.3e-108 397.5 435 53.8
Nitab4.5_0005651g0010 Nicotiana tabacum HOM05D004949 ORTHO05D006006 2.9e-108 396.4 454 48.2
FAN04G2495 Fragaria x ananassa HOM05D004949 ORTHO05D006006 6.5e-108 395.2 534 44.0
Glyma.08G270900 Glycine max HOM05D004949 ORTHO05D006006 1.2e-106 391.0 362 59.1
EL10Ac5g12089 Beta vulgaris HOM05D004949 ORTHO05D006006 1.8e-105 387.1 436 49.8
CiPaw.12G064900 Carya illinoinensis HOM05D004949 ORTHO05D006006 7.4e-104 381.7 432 50.0
Dinv28969 Davidia involucrata HOM05D004949 ORTHO05D006006 2.4e-102 376.7 343 56.9
SalBow6G3319 Salvia bowleyana HOM05D004949 ORTHO05D006006 4.1e-102 375.9 470 47.4
Peaxi162Scf00236g00034 Petunia axillaris HOM05D004949 ORTHO05D006006 1.2e-101 374.4 411 49.1
QL12p004876 Quercus lobata HOM05D004949 ORTHO05D006006 7.7e-101 371.7 355 54.9
Pp3c15_10960 Physcomitrium patens HOM05D004949 ORTHO05D006006 1.3e-100 370.9 456 45.6
CDE06G2155 Ceratophyllum demersum HOM05D004949 ORTHO05D006006 1.2e-98 364.4 323 57.6
TPR.G3324 Trifolium pratense HOM05D004949 ORTHO05D006006 4.7e-98 362.5 290 62.8
unitig_0.g2339 Utricularia gibba HOM05D004949 ORTHO05D006006 8.0e-98 361.7 399 52.6
SEGI_29978 Sequoiadendron giganteum HOM05D004949 ORTHO05D006006 5.7e-96 355.5 393 51.1
MSTRG.7638 Avicennia marina HOM05D004949 ORTHO05D006006 9.7e-96 354.8 322 56.8
SalBow8G0555 Salvia bowleyana HOM05D004949 ORTHO05D006006 4.1e-94 349.4 433 47.6
SMO351G0610 Selaginella moellendorffii HOM05D004949 ORTHO05D006006 7.0e-94 348.6 420 46.7
Mapoly0029s0019 Marchantia polymorpha HOM05D004949 ORTHO05D006006 2.6e-93 346.7 464 43.5
Thecc.03G225400 Theobroma cacao HOM05D004949 ORTHO05D006006 1.7e-92 344.0 351 55.3
HPP92_016910 Vanilla planifolia HOM05D004949 ORTHO05D006006 2.9e-92 343.2 350 52.3
Ca_14051_v3 Cicer arietinum L. HOM05D004949 ORTHO05D006006 3.8e-92 342.8 356 53.4
vmacro00318 Vaccinium macrocarpon HOM05D004949 ORTHO05D006006 2.1e-90 337.0 473 43.8
DCAR_008253 Daucus carota HOM05D004949 ORTHO05D006006 3.4e-88 329.7 408 46.8
SHI07305 Sapria himalayana HOM05D004949 ORTHO05D006006 5.7e-88 328.9 364 51.1
MD00G1071700 Malus domestica HOM05D004949 ORTHO05D006006 1.3e-87 327.8 375 50.7
PGSC0003DMG400017541 Solanum tuberosum HOM05D004949 ORTHO05D006006 2.8e-87 326.6 291 56.0
Oeu048371.1 Olea europaea HOM05D004949 ORTHO05D006006 3.7e-87 326.2 338 51.8
MELO3C013842.2 Cucumis melo HOM05D004949 ORTHO05D006006 1.8e-86 323.9 479 44.5
AagrBONN_evm.TU.Sc2ySwM_368.549 Anthoceros agrestis HOM05D004949 ORTHO05D006006 1.7e-84 317.4 375 48.8
AUR62018700 Chenopodium quinoa HOM05D004949 ORTHO05D006006 5.0e-84 315.8 435 44.6
MD06G1036000 Malus domestica HOM05D004949 ORTHO05D006006 5.5e-83 312.4 276 57.6
CBR_g46224 Chara braunii HOM05D004949 ORTHO05D006006 2.7e-82 310.1 446 41.9
Aa31LG2G21460 Aethionema arabicum HOM05D004949 ORTHO05D006006 3.0e-81 306.6 169 88.2
DCAR_028920 Daucus carota HOM05D004949 ORTHO05D006006 1.8e-78 297.4 278 56.5
Nitab4.5_0000711g0030 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.6e-77 294.3 261 55.9
Gohir.D03G172700 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.6e-74 284.3 246 60.2
Migut.L01003 Erythranthe guttata HOM05D004949 ORTHO05D006006 1.2e-72 278.1 254 54.7
Medtr1g100910 Medicago truncatula HOM05D004949 ORTHO05D006006 5.9e-69 265.8 223 60.5
Lj8A304G48 Lonicera japonica HOM05D004949 ORTHO05D006006 4.1e-62 243.0 264 49.6
Ah.12g055170 Amaranthus hybridus HOM05D004949 ORTHO05D006006 5.4e-62 242.7 409 38.4
Hund11225 Selenicereus undatus HOM05D004949 ORTHO05D006006 4.0e-57 226.5 296 42.9
SGA_v2.0_scaffold38G15014 Striga asiatica HOM05D004949 ORTHO05D006006 6.8e-57 225.7 351 41.0
Migut.O00927 Erythranthe guttata HOM05D004949 ORTHO05D006006 8.9e-57 225.3 280 47.1
Gohir.A09G031300 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.0e-52 211.8 235 51.1
Cre13.g587200 Chlamydomonas reinhardtii HOM05D004949 ORTHO05D006006 1.1e-43 181.8 494 29.8
Rhsim11G0016800 Rhododendron simsii HOM05D004949 ORTHO05D006006 3.8e-39 166.8 453 30.0
PGSC0003DMG400017507 Solanum tuberosum HOM05D004949 ORTHO05D006006 7.3e-35 152.5 159 49.7
Cfa022893 Carpinus fangiana HOM05D004949 ORTHO05D006006 4.4e-32 143.3 210 41.0
MBI04_g33882_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 4.9e-31 139.8 106 60.4
PRCOL_00001577 Prasinoderma coloniale HOM05D004949 ORTHO05D006006 4.2e-30 136.7 373 31.4
MBI04_g33883_MAGBIO Magnolia biondii HOM05D004949 ORTHO05D006006 5.4e-30 136.3 172 48.8
Gohir.A06G130506 Gossypium hirsutum HOM05D004949 ORTHO05D006006 2.1e-29 134.4 164 48.8
Nitab4.5_0000711g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 4.6e-29 133.3 170 45.3
MD06G1036200 Malus domestica HOM05D004949 ORTHO05D006006 2.1e-26 124.4 145 52.4
Nitab4.5_0003568g0040 Nicotiana tabacum HOM05D004949 ORTHO05D006006 1.8e-20 104.8 154 44.2
Migut.L01002 Erythranthe guttata HOM05D004949 ORTHO05D006006 7.4e-19 99.4 63 79.4
Psat7g200760 Pisum sativum HOM05D004949 ORTHO05D006006 7.4e-19 99.4 135 47.4
Cpa.g.sc34.32 Carica papaya HOM05D004949 ORTHO05D006006 3.1e-17 94.0 83 56.6
Gohir.A01G164900 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.8e-16 89.7 75 60.0
Gohir.A04G065628 Gossypium hirsutum HOM05D004949 ORTHO05D006006 5.8e-16 89.7 75 60.0
Gohir.A05G283800 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.3e-15 88.6 75 58.7
Glyma.01G095566 Glycine max HOM05D004949 ORTHO05D006006 3.8e-15 87.0 126 38.1
Gohir.A03G116100 Gossypium hirsutum HOM05D004949 ORTHO05D006006 1.1e-14 85.5 75 58.7
AUR62007303 Chenopodium quinoa HOM05D004949 ORTHO05D006006 9.3e-14 82.4 54 72.2
THA.LOC104827753 Tarenaya hassleriana HOM05D004949 ORTHO05D006006 9.6e-11 72.4 78 52.6
MSTRG.865 Avicennia marina HOM05D004949 ORTHO05D006006 1.3e-10 72.0 125 35.2
PSO541G1551 Papaver somniferum HOM05D004949 ORTHO05D009901 2.1e-10 71.2 52 63.5
TPR.G40857 Trifolium pratense HOM05D004949 ORTHO05D006006 2.1e-10 71.2 81 49.4
TPR.G39375 Trifolium pratense HOM05D004949 ORTHO05D006006 3.8e-07 60.5 46 60.9


User provided reference genes

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