Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 5.2e-262 907.1 441 100.0
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 4.0e-254 880.9 439 96.4
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 5.3e-251 870.5 439 95.2
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 1.0e-246 856.3 439 92.7
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 2.2e-244 848.6 439 92.5
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 3.1e-243 844.7 438 92.2
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.7e-241 839.0 431 92.3
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 6.6e-241 837.0 431 92.3
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 8.6e-241 836.6 439 91.3
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 8.6e-241 836.6 439 91.3
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 1.5e-240 835.9 439 91.1
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 2.8e-239 831.6 439 90.4
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 6.8e-238 827.0 446 89.2
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 3.4e-237 824.7 439 89.5
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 2.5e-232 808.5 446 85.9
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 2.2e-220 768.8 453 80.6
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 2.2e-220 768.8 438 82.4
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 1.9e-219 765.8 429 81.8
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 9.2e-219 763.5 435 82.1
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 9.2e-219 763.5 434 82.5
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 1.2e-218 763.1 431 82.8
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 1.6e-218 762.7 438 82.0
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 2.1e-218 762.3 432 81.9
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 2.7e-218 761.9 431 82.4
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 4.6e-218 761.1 436 82.3
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 4.6e-218 761.1 429 82.8
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 6.0e-218 760.8 438 81.7
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 7.8e-218 760.4 436 81.7
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 1.3e-217 759.6 431 82.6
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 1.1e-216 756.5 436 81.0
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.5e-216 756.1 436 81.2
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 2.5e-216 755.4 430 81.9
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 4.3e-216 754.6 435 81.4
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 4.3e-216 754.6 436 82.1
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 5.6e-216 754.2 426 83.3
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.6e-215 752.7 436 80.3
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.6e-215 752.7 429 82.5
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 2.8e-215 751.9 436 80.5
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 4.7e-215 751.1 435 80.0
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 4.7e-215 751.1 435 80.9
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 6.2e-215 750.7 429 80.9
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 6.2e-215 750.7 437 80.5
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 8.1e-215 750.4 436 81.4
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 1.1e-214 750.0 429 81.4
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 1.8e-214 749.2 438 79.2
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 2.3e-214 748.8 435 79.5
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.1e-214 748.4 430 80.7
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 3.1e-214 748.4 430 80.7
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.1e-214 748.4 429 81.1
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 3.1e-214 748.4 438 79.2
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 5.2e-214 747.7 436 79.1
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 8.9e-214 746.9 436 79.4
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.2e-213 746.5 429 80.7
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 1.5e-213 746.1 429 80.9
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 1.5e-213 746.1 438 79.9
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 1.5e-213 746.1 427 81.3
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 2.0e-213 745.7 429 80.7
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 2.0e-213 745.7 430 81.4
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 3.4e-213 745.0 438 79.7
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 4.4e-213 744.6 428 81.3
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 4.4e-213 744.6 429 80.7
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 5.8e-213 744.2 436 79.4
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 5.8e-213 744.2 436 79.4
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 7.5e-213 743.8 430 79.3
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 9.9e-213 743.4 436 80.3
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 1.7e-212 742.7 438 80.1
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 1.7e-212 742.7 495 72.1
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 4.9e-212 741.1 429 79.7
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 8.3e-212 740.3 435 78.9
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.1e-211 740.0 449 78.8
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 4.1e-211 738.0 427 80.8
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 3.5e-210 734.9 438 77.6
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.9e-208 729.2 440 76.8
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 2.5e-208 728.8 438 77.9
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 9.5e-208 726.9 430 78.8
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 2.1e-207 725.7 434 77.4
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 1.8e-206 722.6 506 70.2
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 1.2e-205 719.9 435 76.8
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.5e-205 719.5 438 76.9
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 2.0e-205 719.2 438 76.9
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 3.4e-205 718.4 465 73.1
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 1.2e-202 709.9 524 67.6
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 7.8e-202 707.2 436 75.2
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 5.1e-201 704.5 412 80.1
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 9.6e-200 700.3 430 75.1
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 2.0e-197 692.6 419 78.3
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 2.6e-197 692.2 411 79.6
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 9.9e-197 690.3 429 74.6
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 9.9e-197 690.3 427 75.4
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 5.4e-195 684.5 440 72.5
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 7.8e-194 680.6 406 78.1
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 1.3e-193 679.9 426 74.9
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 3.9e-193 678.3 396 79.8
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 5.1e-193 677.9 439 71.8
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 1.1e-190 670.2 391 80.1
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 2.0e-189 666.0 426 73.9
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.4e-189 665.2 438 72.4
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 3.4e-189 665.2 445 69.7
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.3e-188 663.3 431 72.2
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.4e-187 659.8 427 72.4
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 8.7e-185 650.6 426 70.9
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 5.6e-184 647.9 437 69.3
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 3.1e-182 642.1 356 87.1
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.4e-179 633.3 430 68.6
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.9e-179 632.9 437 66.4
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.6e-178 629.8 437 71.2
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 1.5e-173 613.2 330 85.8
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 3.4e-173 612.1 426 67.1
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 2.2e-172 609.4 436 65.8
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 3.8e-172 608.6 339 82.9
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 9.7e-168 594.0 343 82.5
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 1.3e-167 593.6 337 83.4
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 5.3e-166 588.2 435 63.2
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 4.6e-162 575.1 391 71.1
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 3.3e-160 568.9 443 61.2
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 5.7e-160 568.2 438 60.7
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 7.4e-160 567.8 443 61.4
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 3.7e-159 565.5 437 65.4
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.4e-158 563.5 441 62.6
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 3.7e-151 538.9 384 71.6
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 3.8e-148 528.9 348 72.4
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 7.2e-147 524.6 334 74.3
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 1.6e-146 523.5 296 82.1
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.0e-145 519.2 431 58.9
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 8.8e-129 464.5 431 52.9
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 5.0e-108 395.6 350 58.9
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 1.2e-104 384.4 239 76.2
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 8.3e-103 378.3 219 82.2
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 4.3e-91 339.3 228 69.7
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 2.1e-74 283.9 176 74.4
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 4.8e-74 282.7 195 69.7
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.8e-74 282.7 157 85.4
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 2.3e-68 263.8 143 83.9
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.2e-64 251.5 197 65.0
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.1e-59 235.0 130 84.6
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.0e-55 221.9 234 53.8
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.9e-51 207.6 113 82.3
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 2.6e-48 197.2 137 74.5
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.0e-47 195.3 107 78.5
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 5.7e-35 152.9 90 81.1
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 8.2e-34 149.1 93 75.3
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 2.0e-32 144.4 165 46.7
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 3.6e-29 133.7 82 78.0
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 1.8e-28 131.3 204 38.7
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 3.5e-24 117.1 258 34.1
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 3.2e-22 110.5 87 64.4
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 3.2e-22 110.5 80 61.2
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 1.8e-20 104.8 72 61.1
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 3.0e-20 104.0 63 79.4
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 1.1e-17 95.5 57 70.2
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 4.5e-16 90.1 121 43.8
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 3.6e-13 80.5 96 46.9
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 1.5e-11 75.1 38 78.9
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 3.5e-08 63.9 81 45.7
AUR62007284 Chenopodium quinoa HOM05D000077 ORTHO05D014281 1.0e-07 62.4 33 78.8
COL.COLO4_12209 Corchorus olitorius HOM05D002051 ORTHO05D002041 1.1e-06 58.9 380 23.9
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 3.3e-06 57.4 69 49.3


User provided reference genes

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