Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 7.9e-38 160.2 98 100.0
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 9.7e-36 153.3 98 83.7
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 3.2e-31 138.3 89 84.3
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 8.2e-27 123.6 109 67.0
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 2.2e-24 115.5 103 66.0
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 2.5e-23 112.1 98 68.4
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 2.5e-23 112.1 98 67.3
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 7.2e-23 110.5 99 65.7
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 1.2e-22 109.8 98 66.3
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 1.2e-22 109.8 98 66.3
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 2.1e-22 109.0 94 67.0
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 2.1e-22 109.0 94 67.0
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 2.7e-22 108.6 100 66.0
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 8.0e-22 107.1 98 64.3
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 8.0e-22 107.1 98 64.3
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 8.0e-22 107.1 98 64.3
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 1.4e-21 106.3 107 58.9
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 1.8e-21 105.9 98 64.3
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 1.8e-21 105.9 100 65.0
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 3.0e-21 105.1 99 65.7
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 3.0e-21 105.1 99 65.7
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 4.4e-20 101.3 107 59.8
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 5.7e-20 100.9 95 64.2
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 1.3e-19 99.8 98 59.2
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 1.7e-19 99.4 86 65.1
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 1.7e-19 99.4 122 51.6
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 2.8e-19 98.6 103 56.3
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 1.4e-18 96.3 102 60.8
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 4.1e-18 94.7 100 60.0
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 5.3e-18 94.4 102 60.8
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 5.3e-18 94.4 100 61.0
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 9.1e-18 93.6 93 57.0
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 9.1e-18 93.6 99 59.6
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 2.0e-17 92.4 94 57.4
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 1.0e-16 90.1 94 59.6
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 1.3e-16 89.7 102 55.9
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 2.2e-16 89.0 106 53.8
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 2.9e-16 88.6 96 58.3
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 2.9e-16 88.6 98 55.1
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 3.8e-16 88.2 95 60.0
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 8.5e-16 87.0 91 59.3
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 1.1e-15 86.7 96 58.3
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 1.5e-15 86.3 103 52.4
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 2.5e-15 85.5 100 56.0
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 2.5e-15 85.5 98 57.1
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 2.5e-15 85.5 101 53.5
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 2.5e-15 85.5 112 51.8
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 5.5e-15 84.3 90 58.9
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 7.2e-15 84.0 106 55.7
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 7.2e-15 84.0 102 52.0
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 9.4e-15 83.6 98 55.1
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 9.4e-15 83.6 91 54.9
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 9.4e-15 83.6 98 53.1
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 1.2e-14 83.2 94 52.1
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 2.1e-14 82.4 98 53.1
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 3.6e-14 81.6 94 57.4
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 4.7e-14 81.3 99 56.6
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 6.1e-14 80.9 93 54.8
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 6.1e-14 80.9 89 52.8
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 8.0e-14 80.5 92 57.6
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 8.0e-14 80.5 92 57.6
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 8.0e-14 80.5 92 57.6
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 8.0e-14 80.5 98 53.1
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 1.0e-13 80.1 93 53.8
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 1.0e-13 80.1 93 53.8
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 1.4e-13 79.7 94 50.0
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.4e-13 79.7 98 52.0
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 1.8e-13 79.3 91 56.0
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 2.3e-13 79.0 96 50.0
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 3.0e-13 78.6 98 53.1
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 3.0e-13 78.6 95 52.6
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 3.0e-13 78.6 98 52.0
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 4.0e-13 78.2 96 49.0
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 4.0e-13 78.2 97 51.5
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 5.2e-13 77.8 94 59.6
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 6.8e-13 77.4 98 55.1
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 3.4e-12 75.1 102 51.0
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 3.4e-12 75.1 98 52.0
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 4.4e-12 74.7 100 50.0
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 4.4e-12 74.7 100 50.0
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 5.7e-12 74.3 98 53.1
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 5.7e-12 74.3 91 53.8
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 7.5e-12 73.9 96 54.2
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 7.5e-12 73.9 96 54.2
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 2.2e-11 72.4 103 49.5
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 2.8e-11 72.0 52 73.1
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 2.8e-11 72.0 89 50.6
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 2.8e-11 72.0 93 49.5
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 3.7e-11 71.6 99 47.5
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 3.7e-11 71.6 97 52.6
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 6.3e-11 70.9 100 46.0
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 6.3e-11 70.9 52 73.1
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 8.3e-11 70.5 96 56.2
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 1.4e-10 69.7 98 51.0
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 1.4e-10 69.7 94 50.0
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 1.4e-10 69.7 95 46.3
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 1.8e-10 69.3 89 49.4
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 2.4e-10 68.9 98 52.0
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 3.1e-10 68.6 98 49.0
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 7.0e-10 67.4 100 48.0
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 1.2e-09 66.6 93 51.6
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.2e-09 66.6 89 48.3
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 1.2e-09 66.6 89 48.3
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 1.2e-09 66.6 98 51.0
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 2.0e-09 65.9 92 48.9
CDE04G0461 Ceratophyllum demersum HOM05D005822 ORTHO05D007267 2.0e-09 65.9 57 64.9
FAN27G3027 Fragaria x ananassa HOM05D007429 ORTHO05D003505 2.0e-09 65.9 90 52.2
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 2.7e-09 65.5 95 48.4
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 3.5e-09 65.1 98 48.0
RcHm_v2.0_Chr6g0306421 Rosa chinensis HOM05D007429 ORTHO05D003505 4.5e-09 64.7 89 51.7
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 5.9e-09 64.3 49 67.3
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 5.9e-09 64.3 89 46.1
HPP92_014491 Vanilla planifolia HOM05D006762 ORTHO05D003505 5.9e-09 64.3 115 44.3
AUR62019952 Chenopodium quinoa HOM05D006762 ORTHO05D003505 7.7e-09 63.9 90 57.8
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 7.7e-09 63.9 92 47.8
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 1.3e-08 63.2 98 46.9
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 1.3e-08 63.2 90 48.9
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 1.3e-08 63.2 98 48.0
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 1.7e-08 62.8 89 57.3
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 2.2e-08 62.4 89 50.6
arahy.Tifrunner.gnm1.ann1.8JK4ZI Arachis hypogaea HOM05D006762 ORTHO05D003505 2.9e-08 62.0 91 60.4
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 2.9e-08 62.0 91 60.4
Zm00001eb186600 Zea mays HOM05D049586 ORTHO05D003505 2.9e-08 62.0 54 75.9
AUR62007089 Chenopodium quinoa HOM05D006762 ORTHO05D003505 3.8e-08 61.6 90 56.7
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 3.8e-08 61.6 89 50.6
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.0e-08 61.2 95 47.4
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 8.5e-08 60.5 51 62.7
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 8.5e-08 60.5 82 51.2
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 8.5e-08 60.5 47 68.1
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 1.1e-07 60.1 94 42.6
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 1.5e-07 59.7 89 49.4
QL04p035820 Quercus lobata HOM05D006762 ORTHO05D003505 1.5e-07 59.7 91 48.4
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 2.5e-07 58.9 54 63.0
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 2.5e-07 58.9 100 43.0
Potri.006G237800 Populus trichocarpa HOM05D007429 ORTHO05D003505 2.5e-07 58.9 89 48.3
Sabra06G0186000 Salix brachista HOM05D007429 ORTHO05D003505 2.5e-07 58.9 89 48.3
MD15G1092600 Malus domestica HOM05D007429 ORTHO05D003505 3.2e-07 58.5 89 46.1
arahy.Tifrunner.gnm1.ann1.D6ADVN Arachis hypogaea HOM05D006762 ORTHO05D003505 5.5e-07 57.8 90 56.7
arahy.Tifrunner.gnm1.ann1.QP3VPD Arachis hypogaea HOM05D006762 ORTHO05D003505 5.5e-07 57.8 90 56.7
Gohir.D08G270600 Gossypium hirsutum HOM05D007429 ORTHO05D003505 5.5e-07 57.8 89 48.3
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 7.2e-07 57.4 43 69.8
Solyc08g066520.3 Solanum lycopersicum HOM05D007429 ORTHO05D003505 9.4e-07 57.0 90 44.4
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 1.2e-06 56.6 37 78.4
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 1.2e-06 56.6 37 78.4
Medtr3g109720 Medicago truncatula HOM05D007429 ORTHO05D003505 1.2e-06 56.6 89 48.3
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 1.6e-06 56.2 40 72.5
MD08G1113300 Malus domestica HOM05D007429 ORTHO05D003505 1.6e-06 56.2 89 44.9
Nitab4.5_0001501g0020 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.6e-06 56.2 95 45.3
Sabra06G0186100 Salix brachista HOM05D008609 ORTHO05D010987 1.6e-06 56.2 89 47.2
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 2.1e-06 55.8 43 69.8
SEGI_29263 Sequoiadendron giganteum HOM05D006762 ORTHO05D003505 2.1e-06 55.8 43 67.4
Sopen08g020350 Solanum pennellii HOM05D007429 ORTHO05D003505 2.1e-06 55.8 90 43.3
unitig_21.g20319 Utricularia gibba HOM05D006762 ORTHO05D003505 2.1e-06 55.8 97 43.3
PGSC0003DMG402029142 Solanum tuberosum HOM05D007429 ORTHO05D003505 2.7e-06 55.5 90 43.3
THA.LOC104811265 Tarenaya hassleriana HOM05D007429 ORTHO05D003505 2.7e-06 55.5 92 48.9
TAR625G0309 Trochodendron aralioides HOM05D003477 ORTHO05D004043 2.7e-06 55.5 89 44.9
Atru.chr7.2081 Acer truncatum HOM05D007429 ORTHO05D003505 3.6e-06 55.1 43 67.4
Glyma.17G210100 Glycine max HOM05D006762 ORTHO05D003505 4.7e-06 54.7 97 40.2
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 4.7e-06 54.7 89 49.4
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 6.1e-06 54.3 41 68.3
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 6.1e-06 54.3 89 48.3
Gorai.004G288500 Gossypium raimondii HOM05D007429 ORTHO05D003505 8.0e-06 53.9 83 48.2
Sc09g0009340 Simmondsia chinensis HOM05D007429 ORTHO05D003505 8.0e-06 53.9 90 47.8


User provided reference genes

Program Settings