Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 4.6e-25 117.1 58 100.0
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 3.9e-24 114.0 58 96.6
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 3.9e-24 114.0 58 96.6
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 5.0e-24 113.6 58 96.6
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 7.3e-23 109.8 58 94.8
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 1.2e-22 109.0 58 93.1
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 1.8e-21 105.1 59 93.2
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 3.1e-21 104.4 58 91.4
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 3.1e-21 104.4 58 91.4
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 4.0e-21 104.0 55 92.7
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 4.0e-21 104.0 55 92.7
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 4.0e-21 104.0 55 92.7
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 5.2e-21 103.6 58 89.7
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 5.2e-21 103.6 58 89.7
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 3.4e-20 100.9 58 87.9
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 3.4e-20 100.9 58 87.9
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 3.2e-18 94.4 58 81.0
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.2e-17 92.4 58 77.6
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.3e-16 89.0 58 75.9
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 1.7e-16 88.6 57 78.9
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 3.9e-16 87.4 54 74.1
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 5.0e-16 87.0 62 71.0
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 6.6e-16 86.7 55 78.2
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 8.6e-16 86.3 53 83.0
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 1.5e-15 85.5 58 75.9
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 1.5e-15 85.5 59 69.5
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 2.5e-15 84.7 58 72.4
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 3.3e-15 84.3 59 71.2
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 3.3e-15 84.3 61 72.1
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 4.3e-15 84.0 58 70.7
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 7.3e-15 83.2 61 70.5
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 7.3e-15 83.2 58 72.4
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 9.5e-15 82.8 60 73.3
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 1.2e-14 82.4 60 71.7
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 1.2e-14 82.4 53 77.4
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 1.6e-14 82.0 52 75.0
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 1.6e-14 82.0 52 75.0
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 2.1e-14 81.6 58 72.4
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 2.8e-14 81.3 52 75.0
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 3.6e-14 80.9 58 70.7
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 3.6e-14 80.9 49 79.6
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 3.6e-14 80.9 50 78.0
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 3.6e-14 80.9 50 78.0
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 3.6e-14 80.9 55 70.9
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 4.7e-14 80.5 62 69.4
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 6.2e-14 80.1 58 63.8
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 8.1e-14 79.7 56 75.0
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 8.1e-14 79.7 55 63.6
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 8.1e-14 79.7 57 71.9
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 1.4e-13 79.0 57 68.4
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 1.8e-13 78.6 58 67.2
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 1.8e-13 78.6 60 63.3
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 1.8e-13 78.6 54 72.2
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 1.8e-13 78.6 56 71.4
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.1e-13 77.8 60 70.0
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 4.0e-13 77.4 57 64.9
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 4.0e-13 77.4 58 69.0
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 4.0e-13 77.4 51 74.5
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 4.0e-13 77.4 60 65.0
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 6.8e-13 76.6 58 67.2
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 8.9e-13 76.3 54 70.4
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.5e-12 75.5 60 68.3
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 2.0e-12 75.1 58 67.2
BolC7t45365H Brassica oleracea HOM05D007758 ORTHO05D009788 2.6e-12 74.7 37 97.3
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 2.6e-12 74.7 58 65.5
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 3.4e-12 74.3 50 72.0
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 3.4e-12 74.3 51 66.7
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 3.4e-12 74.3 58 65.5
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 3.4e-12 74.3 50 70.0
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 5.8e-12 73.6 57 61.4
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 5.8e-12 73.6 52 73.1
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 7.5e-12 73.2 51 66.7
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 7.5e-12 73.2 60 66.7
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 7.5e-12 73.2 57 61.4
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 7.5e-12 73.2 58 63.8
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 9.8e-12 72.8 47 70.2
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 9.8e-12 72.8 60 66.7
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 2.2e-11 71.6 41 82.9
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 3.7e-11 70.9 57 66.7
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 1.1e-10 69.3 43 69.8
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 1.4e-10 68.9 61 59.0
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 3.2e-10 67.8 41 75.6
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 3.2e-10 67.8 75 52.0
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.2e-09 65.9 60 58.3
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 6.0e-09 63.5 87 46.0


User provided reference genes

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