Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G17050 Arabidopsis thaliana HOM05D006150 ORTHO05D007745 1.2e-174 616.3 299 100.0
AL7G37660 Arabidopsis lyrata HOM05D006150 ORTHO05D007745 6.5e-168 594.0 299 95.3
Carub.0007s2437 Capsella rubella HOM05D006150 ORTHO05D007745 6.8e-165 583.9 300 94.0
CARHR223610 Cardamine hirsuta HOM05D006150 ORTHO05D007745 7.5e-164 580.5 299 92.0
Sp7g17140 Schrenkiella parvula HOM05D006150 ORTHO05D007745 1.8e-162 575.9 300 92.3
BraA03t14117Z Brassica rapa HOM05D006150 ORTHO05D007745 3.1e-162 575.1 303 92.4
C07p48520 Brassica napus HOM05D006150 ORTHO05D007745 1.2e-161 573.2 303 90.8
BolC7t45360H Brassica oleracea HOM05D006150 ORTHO05D007745 1.2e-161 573.2 303 90.8
C07p48460 Brassica napus HOM05D006150 ORTHO05D007745 4.5e-161 571.2 301 91.7
BcaNung04656 Brassica carinata HOM05D006150 ORTHO05D007745 5.9e-161 570.9 303 90.8
A03p50280 Brassica napus HOM05D006150 ORTHO05D007745 5.0e-160 567.8 303 91.4
BcaC06g33538 Brassica carinata HOM05D006150 ORTHO05D007745 1.5e-159 566.2 304 89.8
BraA01t01953Z Brassica rapa HOM05D006150 ORTHO05D007745 1.9e-159 565.8 302 91.1
C07p48390 Brassica napus HOM05D006150 ORTHO05D007745 9.5e-159 563.5 302 91.1
BolC1t02493H Brassica oleracea HOM05D006150 ORTHO05D007745 9.5e-159 563.5 300 91.3
BcaNung00130 Brassica carinata HOM05D006150 ORTHO05D007745 6.8e-157 557.4 301 90.7
A01p20260 Brassica napus HOM05D006150 ORTHO05D007745 4.3e-151 538.1 289 91.0
THA.LOC104807929 Tarenaya hassleriana HOM05D006150 ORTHO05D007745 1.7e-147 526.2 298 83.2
Thhalv10026866m.g Eutrema salsugineum HOM05D006150 ORTHO05D007745 3.7e-147 525.0 312 84.3
Gohir.A12G212700 Gossypium hirsutum HOM05D006150 ORTHO05D007745 8.1e-142 507.3 297 81.8
Gorai.008G230800 Gossypium raimondii HOM05D006150 ORTHO05D007745 2.3e-141 505.8 297 81.5
BcaC09g50439 Brassica carinata HOM05D006150 ORTHO05D007745 6.8e-141 504.2 301 84.4
C01p25410 Brassica napus HOM05D006150 ORTHO05D007745 6.8e-141 504.2 301 84.4
Gohir.D12G215200 Gossypium hirsutum HOM05D006150 ORTHO05D007745 2.0e-140 502.7 297 80.8
COL.COLO4_07285 Corchorus olitorius HOM05D006150 ORTHO05D007745 3.4e-140 501.9 296 80.7
Thecc.03G240100 Theobroma cacao HOM05D006150 ORTHO05D007745 4.4e-140 501.5 292 81.8
Aa31LG2G13130 Aethionema arabicum HOM05D006150 ORTHO05D007745 7.5e-140 500.7 323 77.4
Duzib084G0008 Durio zibethinus HOM05D006150 ORTHO05D007745 4.9e-139 498.0 297 79.8
TAR636G1440 Trochodendron aralioides HOM05D006150 ORTHO05D007745 1.6e-137 493.0 296 78.0
Hma1.2p1_0570F.1_g180430 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 4.6e-137 491.5 288 78.5
RcHm_v2.0_Chr7g0205681 Rosa chinensis HOM05D006150 ORTHO05D007745 4.6e-137 491.5 297 80.1
Rhsim07G0136400 Rhododendron simsii HOM05D006150 ORTHO05D007745 6.0e-137 491.1 294 77.9
Manes.01G089000 Manihot esculenta HOM05D006150 ORTHO05D007745 7.8e-137 490.7 293 79.5
Lj8A277T42 Lonicera japonica HOM05D006150 ORTHO05D007745 1.0e-136 490.3 286 79.4
TWI60G0542 Tripterygium wilfordii HOM05D006150 ORTHO05D007745 1.7e-136 489.6 290 79.3
ClCG10G005070 Citrullus lanatus HOM05D006150 ORTHO05D007745 5.1e-136 488.0 293 77.8
Ciclev10021365m.g Citrus clementina HOM05D006150 ORTHO05D007745 1.1e-135 486.9 294 78.2
CANSAT21G0710 Cannabis sativa HOM05D006150 ORTHO05D007745 1.9e-135 486.1 299 75.6
CAN.G572.11 Capsicum annuum HOM05D006150 ORTHO05D007745 1.9e-135 486.1 297 77.1
CsaV3_3G004750 Cucumis sativus L. HOM05D006150 ORTHO05D007745 7.3e-135 484.2 293 78.2
Sopen08g026350 Solanum pennellii HOM05D006150 ORTHO05D007745 9.5e-135 483.8 295 76.3
PGSC0003DMG400026243 Solanum tuberosum HOM05D006150 ORTHO05D007745 9.5e-135 483.8 295 75.9
CSS0019555 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.6e-134 483.0 294 76.9
FAN04G1813 Fragaria x ananassa HOM05D006150 ORTHO05D007745 1.6e-134 483.0 299 77.6
Solyc08g077840.3 Solanum lycopersicum HOM05D006150 ORTHO05D007745 3.6e-134 481.9 292 76.7
Eucgr.D02133 Eucalyptus grandis HOM05D006150 ORTHO05D007745 4.7e-134 481.5 295 78.6
MD04G1055500 Malus domestica HOM05D006150 ORTHO05D007745 6.2e-134 481.1 299 76.6
Sed0022790 Sechium edule HOM05D006150 ORTHO05D007745 8.1e-134 480.7 293 76.8
CiPaw.11G072300 Carya illinoinensis HOM05D006150 ORTHO05D007745 1.1e-133 480.3 294 76.5
MSTRG.6640 Avicennia marina HOM05D006150 ORTHO05D007745 1.8e-133 479.6 294 76.2
FvH4_5g20400 Fragaria vesca HOM05D006150 ORTHO05D007745 5.2e-133 478.0 290 79.0
EL10Ac5g12270 Beta vulgaris HOM05D006150 ORTHO05D007745 8.9e-133 477.2 299 74.2
Atru.chr9.1206 Acer truncatum HOM05D006150 ORTHO05D007745 1.5e-132 476.5 296 77.0
Cc08_g11330 Coffea canephora HOM05D006150 ORTHO05D007745 2.0e-132 476.1 296 75.0
MBI04_g13858_MAGBIO Magnolia biondii HOM05D006150 ORTHO05D007745 2.0e-132 476.1 298 75.2
Cfa012327 Carpinus fangiana HOM05D006150 ORTHO05D007745 2.6e-132 475.7 298 76.2
FAN08G0760 Fragaria x ananassa HOM05D006150 ORTHO05D007745 3.4e-132 475.3 294 77.6
Potri.003G083600 Populus trichocarpa HOM05D006150 ORTHO05D007745 4.4e-132 474.9 297 76.4
Ah.12g053980 Amaranthus hybridus HOM05D006150 ORTHO05D007745 9.9e-132 473.8 298 72.8
Lalb_Chr09g0329771 Lupinus albus HOM05D006150 ORTHO05D007745 4.9e-131 471.5 303 74.3
PSO732G0290 Papaver somniferum HOM05D006150 ORTHO05D007745 4.9e-131 471.5 297 76.8
PSO675G6476 Papaver somniferum HOM05D006150 ORTHO05D007745 1.9e-130 469.5 303 75.6
SalBow7G3619 Salvia bowleyana HOM05D006150 ORTHO05D007745 7.1e-130 467.6 284 76.4
DCAR_008330 Daucus carota HOM05D006150 ORTHO05D007745 9.2e-130 467.2 299 75.6
ECA234G2169 Erigeron canadensis HOM05D006150 ORTHO05D007745 2.1e-129 466.1 295 73.9
PGR031G0533 Punica granatum HOM05D006150 ORTHO05D007745 3.5e-129 465.3 260 83.8
arahy.Tifrunner.gnm1.ann1.IPM3U6 Arachis hypogaea HOM05D006150 ORTHO05D007745 6.0e-129 464.5 295 73.9
Glyma.17G148400 Glycine max HOM05D006150 ORTHO05D007745 1.3e-128 463.4 299 72.6
Glyma.05G066500 Glycine max HOM05D006150 ORTHO05D007745 1.7e-128 463.0 299 72.2
Nn6g33757 Nelumbo nucifera HOM05D006150 ORTHO05D007745 6.6e-128 461.1 286 76.6
Haze_08363 Corylus avellana HOM05D006150 ORTHO05D007745 1.1e-127 460.3 323 70.0
arahy.Tifrunner.gnm1.ann1.YY6LCE Arachis hypogaea HOM05D006150 ORTHO05D007745 7.3e-127 457.6 295 73.9
VMungo0251G1767 Vigna mungo HOM05D006150 ORTHO05D007745 1.6e-126 456.4 299 70.6
HanXRQChr17g0534011 Helianthus annuus HOM05D006150 ORTHO05D007745 3.6e-126 455.3 295 71.9
PSO732G0039 Papaver somniferum HOM05D006150 ORTHO05D007745 1.4e-125 453.4 298 75.2
Lj4g0002003 Lotus japonicus HOM05D006150 ORTHO05D007745 4.0e-125 451.8 293 73.0
Nitab4.5_0000500g0240 Nicotiana tabacum HOM05D006150 ORTHO05D007745 4.0e-125 451.8 302 73.5
Phvul.003G225600 Phaseolus vulgaris HOM05D006150 ORTHO05D007745 9.0e-125 450.7 298 70.1
Ca_22017_v3 Cicer arietinum L. HOM05D006150 ORTHO05D007745 1.2e-124 450.3 299 70.9
Medtr4g099290 Medicago truncatula HOM05D006150 ORTHO05D007745 1.5e-124 449.9 299 70.6
CDE12G0966 Ceratophyllum demersum HOM05D006150 ORTHO05D007745 2.6e-124 449.1 295 72.2
Nitab4.5_0009451g0030 Nicotiana tabacum HOM05D006150 ORTHO05D007745 5.8e-124 448.0 301 72.1
ATR0665G013 Amborella trichopoda HOM05D006150 ORTHO05D007745 1.7e-123 446.4 297 72.1
unitig_746.g26644 Utricularia gibba HOM05D006150 ORTHO05D007745 2.9e-123 445.7 293 71.3
TPR.G25747 Trifolium pratense HOM05D006150 ORTHO05D007745 6.4e-123 444.5 299 71.2
Aqoxy5G02622 Aquilegia oxysepala HOM05D006150 ORTHO05D007745 4.2e-122 441.8 307 70.0
Os07g0495000 Oryza sativa ssp. japonica HOM05D006150 ORTHO05D007745 1.3e-120 436.8 304 69.1
QL12p008732 Quercus lobata HOM05D006150 ORTHO05D007745 6.6e-120 434.5 396 57.3
Peaxi162Scf00301g00519 Petunia axillaris HOM05D006150 ORTHO05D007745 1.1e-117 427.2 280 72.5
Zm00001eb322060 Zea mays HOM05D006150 ORTHO05D007745 9.0e-117 424.1 278 71.6
HPP92_025744 Vanilla planifolia HOM05D006150 ORTHO05D007745 6.0e-113 411.4 297 68.7
Actinidia02195 Actinidia chinensis HOM05D006150 ORTHO05D007745 7.9e-113 411.0 261 73.9
SEGI_33649 Sequoiadendron giganteum HOM05D006150 ORTHO05D007745 2.5e-111 406.0 289 68.2
Psat4g076080 Pisum sativum HOM05D006150 ORTHO05D007745 7.4e-111 404.4 272 69.5
Dinv28876 Davidia involucrata HOM05D006150 ORTHO05D007745 4.8e-110 401.7 246 78.9
Sc01g0007980 Simmondsia chinensis HOM05D006150 ORTHO05D007745 2.0e-108 396.4 239 77.4
vmacro00832 Vaccinium macrocarpon HOM05D006150 ORTHO05D007745 3.4e-108 395.6 296 67.6
Pp3c9_12580 Physcomitrium patens HOM05D006150 ORTHO05D007745 2.8e-102 375.9 295 63.7
AagrBONN_evm.TU.Sc2ySwM_228.2274 Anthoceros agrestis HOM05D006150 ORTHO05D007745 7.6e-100 367.9 249 71.5
Prupe.5G055300 Prunus persica HOM05D006150 ORTHO05D007745 4.9e-99 365.2 212 83.0
Oeu012348.1 Olea europaea HOM05D006150 ORTHO05D007745 1.3e-96 357.1 211 81.0
Mapoly0072s0097 Marchantia polymorpha HOM05D006150 ORTHO05D007745 4.3e-95 352.1 258 63.6
GSVIVG01003685001 Vitis vinifera HOM05D006150 ORTHO05D007745 2.6e-92 342.8 285 61.1
AUR62007167 Chenopodium quinoa HOM05D006150 ORTHO05D007745 7.7e-92 341.3 201 79.1
AUR62018839 Chenopodium quinoa HOM05D006150 ORTHO05D007745 1.0e-91 340.9 201 78.1
SGA_v2.0_scaffold181G39680 Striga asiatica HOM05D006150 ORTHO05D007745 7.2e-90 334.7 243 69.5
Lsat_1_v5_gn_3_15361 Lactuca sativa HOM05D006150 ORTHO05D007745 4.3e-87 325.5 257 65.0
Actinidia25909 Actinidia chinensis HOM05D006150 ORTHO05D007745 1.3e-75 287.3 293 54.3
MCO07G379 Micromonas commoda HOM05D006150 ORTHO05D007745 9.7e-71 271.2 282 48.2
Potri.001G150800 Populus trichocarpa HOM05D006150 ORTHO05D007745 1.2e-68 264.2 195 66.7
Cre06.g290000 Chlamydomonas reinhardtii HOM05D006150 ORTHO05D007745 2.9e-67 259.6 258 50.0
MD06G1047100 Malus domestica HOM05D006150 ORTHO05D007745 2.0e-63 246.9 270 51.5
MELO3C014174.2 Cucumis melo HOM05D006150 ORTHO05D007745 8.0e-57 224.9 286 48.3
Sabra01G0120800 Salix brachista HOM05D006150 ORTHO05D007745 1.2e-55 221.1 175 62.3
MCO04G282 Micromonas commoda HOM05D006150 ORTHO05D007745 3.7e-54 216.1 262 45.8
Hma1.2p1_0570F.1_g180440 Hydrangea macrophylla HOM05D006150 ORTHO05D007745 5.9e-52 208.8 128 74.2
FAN18G0603 Fragaria x ananassa HOM05D006150 ORTHO05D007745 5.5e-50 202.2 149 68.5
CSS0048254 Camellia sinensis var. sinensis HOM05D006150 ORTHO05D007745 1.0e-40 171.4 97 83.5
BcaC01g03436 Brassica carinata HOM05D006150 ORTHO05D007745 2.9e-38 163.3 104 76.0
Sabra01G0120600 Salix brachista HOM05D006150 ORTHO05D007745 4.9e-38 162.5 162 56.2
PSO717G0125 Papaver somniferum HOM05D006150 ORTHO05D007745 1.1e-34 151.4 93 74.2
Cpa.g.sc98.38 Carica papaya HOM05D006150 ORTHO05D007745 8.9e-32 141.7 81 77.8
CBR_g38093 Chara braunii HOM05D006150 ORTHO05D007745 4.1e-29 132.9 66 84.8
Cpa.g.sc98.35 Carica papaya HOM05D006150 ORTHO05D007745 1.8e-16 90.9 56 73.2
GSVIVG01021810001 Vitis vinifera HOM05D006150 ORTHO05D007745 9.9e-15 85.1 67 61.2
Oeu040463.1 Olea europaea HOM05D001574 ORTHO05D000708 4.0e-08 63.2 57 57.9
Cpa.g.sc3814.1 Carica papaya HOM05D006150 ORTHO05D007745 4.4e-07 59.7 35 71.4
Lsat_1_v5_gn_2_23540 Lactuca sativa HOM05D002379 ORTHO05D003469 9.9e-07 58.5 91 39.6
Lsat_1_v5_gn_8_14120 Lactuca sativa HOM05D002379 ORTHO05D021531 9.9e-07 58.5 91 39.6
Lsat_1_v5_gn_9_81181 Lactuca sativa HOM05D002379 ORTHO05D003469 9.9e-07 58.5 91 39.6
MELO3C000773.2 Cucumis melo HOM05D006150 ORTHO05D007745 1.3e-06 58.2 37 78.4
Lsat_1_v5_gn_6_74120 Lactuca sativa HOM05D006150 ORTHO05D233887 1.3e-06 58.2 33 72.7
A06p15030 Brassica napus HOM05D006150 ORTHO05D096911 2.2e-06 57.4 32 81.2


User provided reference genes

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