Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G16807 Arabidopsis thaliana HOM05D007047 ORTHO05D009177 9.5e-232 806.6 440 100.0
AL7G37840 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 3.4e-189 665.2 441 84.6
Sp7g17290 Schrenkiella parvula HOM05D007047 ORTHO05D009177 1.0e-137 494.2 468 61.8
Carub.0007s2455 Capsella rubella HOM05D007047 ORTHO05D009177 3.0e-137 492.7 470 62.1
Thhalv10027153m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 1.5e-131 473.8 454 63.7
CARHR223430 Cardamine hirsuta HOM05D007047 ORTHO05D009177 2.7e-125 453.0 486 58.6
A08p12720 Brassica napus HOM05D007047 ORTHO05D006202 7.1e-94 348.6 474 52.1
BolC8t48412H Brassica oleracea HOM05D007047 ORTHO05D009177 1.2e-93 347.8 478 50.8
Aa31LG2G12990 Aethionema arabicum HOM05D007047 ORTHO05D009177 4.3e-91 339.3 465 48.6
BcaC07g38023 Brassica carinata HOM05D007047 ORTHO05D009177 2.0e-88 330.5 486 49.4
BraA08t33261Z Brassica rapa HOM05D007047 ORTHO05D009177 7.6e-88 328.6 478 50.2
BcaB04g18396 Brassica carinata HOM05D007047 ORTHO05D006202 8.3e-87 325.1 485 48.7
THA.LOC104807915 Tarenaya hassleriana HOM05D007047 ORTHO05D009177 1.7e-79 300.8 491 42.8
Thhalv10027163m.g Eutrema salsugineum HOM05D007047 ORTHO05D009177 1.1e-49 201.8 213 57.7
Atru.chr9.1243 Acer truncatum HOM05D007047 ORTHO05D009177 1.5e-27 128.3 446 30.3
COL.COLO4_10022 Corchorus olitorius HOM05D007047 ORTHO05D009177 5.7e-27 126.3 480 28.3
PGR031G1177 Punica granatum HOM05D007047 ORTHO05D009177 1.4e-25 121.7 436 29.8
Potri.003G080700 Populus trichocarpa HOM05D007047 ORTHO05D009177 3.5e-24 117.1 470 27.9
Thecc.03G244500 Theobroma cacao HOM05D007047 ORTHO05D009177 7.7e-24 115.9 485 28.7
QL12p009685 Quercus lobata HOM05D007047 ORTHO05D009177 3.2e-22 110.5 483 30.4
Sabra03G0052300 Salix brachista HOM05D007047 ORTHO05D009177 4.2e-22 110.2 464 28.2
MELO3C013912.2 Cucumis melo HOM05D007047 ORTHO05D009177 1.6e-21 108.2 465 29.0
Haze_07962 Corylus avellana HOM05D007047 ORTHO05D009177 1.0e-20 105.5 438 27.6
Ciclev10024423m.g Citrus clementina HOM05D007047 ORTHO05D009177 3.0e-20 104.0 449 25.8
QL12p009257 Quercus lobata HOM05D007047 ORTHO05D009177 4.0e-20 103.6 477 28.9
Cpa.g.sc559.1 Carica papaya HOM05D007047 ORTHO05D009177 1.1e-19 102.1 319 29.2
ClCG10G002400 Citrullus lanatus HOM05D007047 ORTHO05D009177 1.1e-19 102.1 463 27.0
Manes.02G042900 Manihot esculenta HOM05D007047 ORTHO05D009177 2.6e-19 100.9 526 26.6
CiPaw.12G048400 Carya illinoinensis HOM05D007047 ORTHO05D009177 5.7e-19 99.8 497 27.4
CsaV3_3G002430 Cucumis sativus L. HOM05D007047 ORTHO05D009177 5.7e-19 99.8 459 27.9
GSVIVG01004793001 Vitis vinifera HOM05D000549 ORTHO05D006202 5.7e-19 99.8 330 30.9
Dinv28849 Davidia involucrata HOM05D007047 ORTHO05D006202 8.2e-18 95.9 494 26.7
Hund11335 Selenicereus undatus HOM05D007047 ORTHO05D009177 1.1e-17 95.5 458 25.8
Duzib205G0846 Durio zibethinus HOM05D007047 ORTHO05D009177 2.4e-17 94.4 495 28.1
FvH4_2g33151 Fragaria vesca HOM05D007047 ORTHO05D009177 3.1e-17 94.0 472 26.9
FAN04G0327 Fragaria x ananassa HOM05D007047 ORTHO05D009177 2.7e-16 90.9 538 25.7
Nn6g33825 Nelumbo nucifera HOM05D007047 ORTHO05D009177 2.7e-16 90.9 345 28.4
FAN24G2075 Fragaria x ananassa HOM05D007047 ORTHO05D009177 3.5e-16 90.5 468 26.3
TPR.G17974 Trifolium pratense HOM05D007047 ORTHO05D009177 3.5e-16 90.5 441 27.0
AUR62006813 Chenopodium quinoa HOM05D007047 ORTHO05D009177 4.5e-16 90.1 456 25.9
Lj2g0019775 Lotus japonicus HOM05D007047 ORTHO05D009177 5.9e-16 89.7 305 29.8
FAN27G3081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.3e-15 88.6 306 28.1
Hma1.2p1_0821F.1_g224180 Hydrangea macrophylla HOM05D007047 ORTHO05D009177 1.3e-15 88.6 481 27.2
PSO063G2347 Papaver somniferum HOM05D007047 ORTHO05D009177 1.7e-15 88.2 458 25.5
SalBow6G1440 Salvia bowleyana HOM05D007047 ORTHO05D009177 2.2e-15 87.8 467 25.7
Psat2g177160 Pisum sativum HOM05D007047 ORTHO05D009177 3.8e-15 87.0 429 27.0
SGA_v2.0_scaffold104G30204 Striga asiatica HOM05D007047 ORTHO05D009177 5.0e-15 86.7 461 28.2
Glyma.01G206100 Glycine max HOM05D007047 ORTHO05D009177 8.5e-15 85.9 454 26.2
FAN08G2081 Fragaria x ananassa HOM05D007047 ORTHO05D009177 1.5e-14 85.1 457 25.8
TWI60G0889 Tripterygium wilfordii HOM05D007047 ORTHO05D009177 1.5e-14 85.1 511 25.0
TAR375G0331 Trochodendron aralioides HOM05D007047 ORTHO05D009177 1.5e-14 85.1 355 28.2
AL6G36200 Arabidopsis lyrata HOM05D007047 ORTHO05D009177 1.9e-14 84.7 62 72.6
Migut.A01028 Erythranthe guttata HOM05D007047 ORTHO05D009177 2.5e-14 84.3 448 27.9
CSS0008245 Camellia sinensis var. sinensis HOM05D007047 ORTHO05D009177 3.2e-14 84.0 496 24.4
Eucgr.D02116 Eucalyptus grandis HOM05D007047 ORTHO05D009177 4.2e-14 83.6 318 29.2
Gohir.A08G166600 Gossypium hirsutum HOM05D007047 ORTHO05D009177 4.2e-14 83.6 481 24.7
Gorai.004G194800 Gossypium raimondii HOM05D007047 ORTHO05D009177 4.2e-14 83.6 454 27.1
CANSAT21G2499 Cannabis sativa HOM05D007047 ORTHO05D009177 5.5e-14 83.2 491 25.1
Nitab4.5_0000506g0030 Nicotiana tabacum HOM05D007047 ORTHO05D009177 5.5e-14 83.2 484 24.4
RcHm_v2.0_Chr7g0204751 Rosa chinensis HOM05D007047 ORTHO05D009177 5.5e-14 83.2 465 27.7
Sed0008627 Sechium edule HOM05D007047 ORTHO05D009177 5.5e-14 83.2 317 30.6
PGSC0003DMG400024159 Solanum tuberosum HOM05D007047 ORTHO05D009177 1.2e-13 82.0 504 24.2
AUR62000471 Chenopodium quinoa HOM05D007047 ORTHO05D009177 2.1e-13 81.3 452 25.2
Ah.10g026860 Amaranthus hybridus HOM05D007047 ORTHO05D009177 8.0e-13 79.3 453 23.8
Prupe.4G179300 Prunus persica HOM05D007047 ORTHO05D009177 2.3e-12 77.8 456 25.7
DCAR_000643 Daucus carota HOM05D007047 ORTHO05D009177 4.0e-12 77.0 356 25.3
Nitab4.5_0006375g0010 Nicotiana tabacum HOM05D007047 ORTHO05D009177 5.2e-12 76.6 473 25.2
CAN.G62.14 Capsicum annuum HOM05D007047 ORTHO05D009177 6.8e-12 76.3 332 26.2
Peaxi162Scf00190g01213 Petunia axillaris HOM05D007047 ORTHO05D009177 1.5e-11 75.1 464 24.6
Oeu045687.1 Olea europaea HOM05D007047 ORTHO05D009177 2.0e-11 74.7 468 24.8
MD06G1050900 Malus domestica HOM05D007047 ORTHO05D009177 4.4e-11 73.6 466 26.0
Actinidia31505 Actinidia chinensis HOM05D007047 ORTHO05D006202 1.3e-10 72.0 457 26.5
Solyc06g060860.2 Solanum lycopersicum HOM05D007047 ORTHO05D009177 1.3e-10 72.0 499 23.2
MSTRG.25515 Avicennia marina HOM05D007047 ORTHO05D009177 1.7e-10 71.6 501 26.1
Phvul.002G000400 Phaseolus vulgaris HOM05D007047 ORTHO05D009177 1.7e-10 71.6 428 24.3
Medtr5g013140 Medicago truncatula HOM05D007047 ORTHO05D009177 3.7e-10 70.5 452 25.7
arahy.Tifrunner.gnm1.ann1.J4EMKX Arachis hypogaea HOM05D007047 ORTHO05D009177 4.8e-10 70.1 463 25.1
arahy.Tifrunner.gnm1.ann1.XH35PM Arachis hypogaea HOM05D007047 ORTHO05D009177 4.8e-10 70.1 463 25.1
Ca_24599_v3 Cicer arietinum L. HOM05D007047 ORTHO05D009177 8.3e-10 69.3 317 28.1
Sopen06g021010 Solanum pennellii HOM05D007047 ORTHO05D009177 1.1e-09 68.9 324 24.7
Ciclev10019636m.g Citrus clementina HOM05D000549 ORTHO05D006202 1.8e-09 68.2 220 29.1
EL10Ac4g09553 Beta vulgaris HOM05D007047 ORTHO05D009177 4.1e-09 67.0 448 23.2
FAN20G0731 Fragaria x ananassa HOM05D007047 ORTHO05D009177 7.0e-09 66.2 321 26.2
Lsat_1_v5_gn_4_126100 Lactuca sativa HOM05D007047 ORTHO05D009177 1.6e-08 65.1 321 27.4
Lalb_Chr16g0379431 Lupinus albus HOM05D007047 ORTHO05D009177 4.5e-08 63.5 447 24.2
Oeu045675.1 Olea europaea HOM05D007047 ORTHO05D009177 4.5e-08 63.5 344 27.3
Dinv39189 Davidia involucrata HOM05D000549 ORTHO05D006202 1.0e-07 62.4 225 28.4
Gohir.D08G185400 Gossypium hirsutum HOM05D007047 ORTHO05D009177 1.3e-07 62.0 256 27.0
Cpa.g.sc1463.1 Carica papaya HOM05D007047 ORTHO05D009177 1.1e-06 58.9 82 45.1
Cc08_g11870 Coffea canephora HOM05D000549 ORTHO05D006202 2.5e-06 57.8 110 32.7
VMungo1215G0554 Vigna mungo HOM05D002164 ORTHO05D002267 4.2e-06 57.0 308 26.0


User provided reference genes

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