Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 1.5e-95 352.8 177 100.0
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 5.0e-91 337.8 175 96.6
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 3.4e-87 325.1 177 91.0
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 4.1e-85 318.2 175 90.3
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 1.6e-84 316.2 177 89.3
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 1.6e-84 316.2 179 89.4
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 3.5e-84 315.1 178 89.3
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 3.5e-84 315.1 177 88.7
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 1.0e-83 313.5 177 88.7
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 5.0e-83 311.2 176 88.6
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 1.9e-82 309.3 177 87.0
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 6.1e-81 304.3 174 86.8
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 1.0e-80 303.5 177 86.4
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 8.9e-80 300.4 177 85.3
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 2.8e-78 295.4 177 84.2
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 8.0e-73 277.3 176 77.8
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 7.0e-69 264.2 175 75.4
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 3.5e-68 261.9 176 73.9
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 3.5e-68 261.9 175 75.4
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 4.6e-68 261.5 176 72.2
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 6.0e-68 261.2 175 74.9
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 1.0e-67 260.4 175 75.4
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 1.7e-67 259.6 175 73.1
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 3.0e-67 258.8 183 72.1
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 5.0e-67 258.1 173 75.1
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 8.6e-67 257.3 173 74.6
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 1.9e-66 256.1 174 73.6
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 3.3e-66 255.4 176 74.4
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 4.3e-66 255.0 173 74.0
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 2.1e-65 252.7 174 72.4
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 2.1e-65 252.7 174 72.4
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 2.8e-65 252.3 175 71.4
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 2.8e-65 252.3 175 70.9
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 3.6e-65 251.9 170 74.1
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 4.7e-65 251.5 179 72.1
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 8.0e-65 250.8 174 73.0
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 1.1e-64 250.4 175 73.1
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.8e-64 249.6 174 72.4
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 2.3e-64 249.2 176 72.2
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 3.1e-64 248.8 175 70.3
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 4.0e-64 248.4 169 74.6
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 4.0e-64 248.4 169 72.8
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 5.2e-64 248.1 176 71.0
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 8.9e-64 247.3 176 71.6
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 2.0e-63 246.1 174 71.3
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 2.0e-63 246.1 175 70.9
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 2.6e-63 245.7 170 71.8
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 2.6e-63 245.7 177 68.9
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 3.4e-63 245.4 176 70.5
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 3.4e-63 245.4 175 70.9
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 3.4e-63 245.4 170 70.0
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 4.4e-63 245.0 168 73.2
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 5.8e-63 244.6 175 71.4
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 5.8e-63 244.6 177 68.9
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 9.8e-63 243.8 175 69.1
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 9.8e-63 243.8 175 69.1
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.3e-62 243.4 174 70.1
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 1.3e-62 243.4 168 73.2
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 1.3e-62 243.4 175 71.4
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 1.7e-62 243.0 170 70.6
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 3.7e-62 241.9 171 70.8
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 3.7e-62 241.9 176 68.8
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 4.9e-62 241.5 168 73.8
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.9e-62 241.5 170 68.8
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 4.9e-62 241.5 172 72.1
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.9e-62 241.5 174 69.0
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 4.9e-62 241.5 169 69.8
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 4.9e-62 241.5 170 69.4
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 4.9e-62 241.5 175 69.1
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 4.9e-62 241.5 175 69.7
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 6.4e-62 241.1 175 69.1
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 8.3e-62 240.7 171 71.3
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 8.3e-62 240.7 175 67.4
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 1.4e-61 240.0 170 71.8
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.4e-61 240.0 172 71.5
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.9e-61 239.6 170 68.8
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.9e-61 239.6 170 68.2
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 1.9e-61 239.6 168 72.0
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 1.9e-61 239.6 171 70.2
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 2.4e-61 239.2 174 68.4
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 3.2e-61 238.8 169 69.8
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 3.2e-61 238.8 170 68.8
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 3.2e-61 238.8 175 69.7
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 4.1e-61 238.4 174 69.0
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 4.1e-61 238.4 175 66.9
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 7.1e-61 237.7 172 68.6
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 7.1e-61 237.7 171 69.6
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 9.2e-61 237.3 169 69.8
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 9.2e-61 237.3 174 70.1
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 9.2e-61 237.3 172 68.0
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 1.2e-60 236.9 177 66.7
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 1.6e-60 236.5 175 68.6
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 1.6e-60 236.5 175 68.0
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 2.1e-60 236.1 175 66.9
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 2.1e-60 236.1 202 61.4
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 2.1e-60 236.1 170 68.8
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 2.7e-60 235.7 176 69.3
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 7.8e-60 234.2 174 67.8
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.0e-59 233.8 175 68.0
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 1.0e-59 233.8 177 69.5
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.3e-59 233.4 169 67.5
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 3.9e-59 231.9 168 69.0
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 5.1e-59 231.5 172 68.0
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 6.6e-59 231.1 167 69.5
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.1e-58 230.3 173 68.2
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 3.6e-57 225.3 161 69.6
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 8.1e-57 224.2 170 66.5
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 8.1e-57 224.2 188 61.2
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 1.5e-55 219.9 168 66.1
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.6e-55 219.2 174 64.9
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 2.6e-55 219.2 182 63.7
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 4.4e-55 218.4 170 65.3
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 9.9e-55 217.2 180 63.3
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.7e-54 216.5 213 56.3
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 2.9e-54 215.7 169 66.3
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 2.4e-53 212.6 169 65.7
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 3.2e-53 212.2 148 72.3
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 5.4e-53 211.5 175 63.4
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 5.4e-53 211.5 174 63.8
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 9.2e-53 210.7 148 71.6
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 1.6e-52 209.9 178 64.6
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 3.5e-52 208.8 147 74.1
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 1.0e-51 207.2 177 61.0
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 3.0e-51 205.7 201 57.2
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 5.1e-51 204.9 160 64.4
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 1.1e-50 203.8 147 68.0
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 7.3e-50 201.1 169 64.5
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 3.2e-45 185.7 117 79.5
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 8.1e-41 171.0 172 56.4
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 5.3e-40 168.3 165 53.9
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 6.9e-40 167.9 118 72.0
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 1.5e-39 166.8 162 52.5
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 3.8e-38 162.2 165 50.9
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.8e-38 162.2 170 54.1
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 4.9e-38 161.8 162 51.2
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 8.4e-38 161.0 164 50.0
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.1e-37 160.6 114 70.2
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 1.9e-37 159.8 115 68.7
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 2.0e-31 139.8 160 50.6
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 3.4e-31 139.0 222 40.1
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 1.7e-30 136.7 101 68.3
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 3.8e-30 135.6 171 46.2
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.7e-28 129.4 156 50.0
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 2.7e-28 129.4 198 44.9
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 7.9e-28 127.9 86 72.1
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 1.3e-27 127.1 83 73.5
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 2.3e-27 126.3 161 44.1
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.5e-26 122.9 83 71.1
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 7.4e-26 121.3 87 71.3
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 2.8e-25 119.4 90 64.4
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 2.8e-25 119.4 83 67.5
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 1.5e-23 113.6 139 48.2
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 1.0e-22 110.9 117 54.7
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 6.5e-22 108.2 83 65.1
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 2.1e-20 103.2 88 59.1
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 2.3e-19 99.8 75 68.0
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 1.5e-18 97.1 88 61.4
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 4.2e-13 79.0 138 41.3
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 1.6e-09 67.0 50 58.0
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 1.6e-09 67.0 42 73.8
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 6.3e-09 65.1 216 29.2
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 2.4e-08 63.2 58 55.2
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 1.2e-07 60.8 71 47.9
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 5.0e-06 55.5 85 42.4


User provided reference genes

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