Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G16566 Arabidopsis thaliana HOM05D007031 ORTHO05D008815 1.4e-98 362.8 174 100.0
AL7G38260 Arabidopsis lyrata HOM05D007031 ORTHO05D008815 2.1e-78 295.8 145 95.9
Carub.0007s2484 Capsella rubella HOM05D007031 ORTHO05D008815 2.6e-76 288.9 143 93.7
CARHR223050 Cardamine hirsuta HOM05D007031 ORTHO05D008815 7.9e-73 277.3 145 88.3
Thhalv10026497m.g Eutrema salsugineum HOM05D007031 ORTHO05D008815 5.7e-71 271.2 141 88.7
BcaC09g50373 Brassica carinata HOM05D007031 ORTHO05D008815 1.8e-69 266.2 146 84.2
BcaNung00171 Brassica carinata HOM05D007031 ORTHO05D008815 1.8e-69 266.2 146 85.6
BolC1t02559H Brassica oleracea HOM05D007031 ORTHO05D008815 2.2e-67 259.2 147 83.0
THA.LOC104815489 Tarenaya hassleriana HOM05D007031 ORTHO05D008815 2.2e-67 259.2 163 76.7
BraA01t02001Z Brassica rapa HOM05D007031 ORTHO05D008815 2.9e-67 258.8 147 83.0
Aa31LG2G12690 Aethionema arabicum HOM05D007031 ORTHO05D008815 3.6e-65 251.9 141 80.1
AL7G38210 Arabidopsis lyrata HOM05D007031 ORTHO05D008815 2.3e-64 249.2 122 95.9
BcaNung02861 Brassica carinata HOM05D007031 ORTHO05D008815 1.8e-61 239.6 150 77.3
TWI60G0154 Tripterygium wilfordii HOM05D007031 ORTHO05D008815 4.5e-60 235.0 142 76.1
Ciclev10022693m.g Citrus clementina HOM05D007031 ORTHO05D008815 5.5e-58 228.0 147 74.1
Gohir.D08G188900 Gossypium hirsutum HOM05D007031 ORTHO05D008815 1.2e-57 226.9 143 72.0
Gorai.004G199000 Gossypium raimondii HOM05D007031 ORTHO05D008815 1.2e-57 226.9 143 72.0
Duzib205G0920 Durio zibethinus HOM05D007031 ORTHO05D008815 1.6e-57 226.5 140 73.6
Dinv21635 Davidia involucrata HOM05D007031 ORTHO05D008815 2.7e-57 225.7 142 74.6
MSTRG.13772 Avicennia marina HOM05D007031 ORTHO05D008815 2.3e-56 222.6 142 71.1
Cc08_g12500 Coffea canephora HOM05D007031 ORTHO05D008815 3.9e-56 221.9 137 74.5
Lsat_1_v5_gn_5_187960 Lactuca sativa HOM05D007031 ORTHO05D008815 3.9e-56 221.9 144 73.6
CSS0040909 Camellia sinensis var. sinensis HOM05D007031 ORTHO05D008815 3.3e-55 218.8 142 71.8
TAR636G3191 Trochodendron aralioides HOM05D007031 ORTHO05D008815 4.4e-55 218.4 145 72.4
Migut.E01683 Erythranthe guttata HOM05D007031 ORTHO05D008815 7.4e-55 217.6 136 72.1
RcHm_v2.0_Chr7g0203161 Rosa chinensis HOM05D007031 ORTHO05D008815 7.4e-55 217.6 148 73.6
Migut.E00966 Erythranthe guttata HOM05D007031 ORTHO05D008815 9.7e-55 217.2 136 72.1
Eucgr.E00427 Eucalyptus grandis HOM05D007031 ORTHO05D008815 2.8e-54 215.7 141 70.2
Solyc08g007380.4 Solanum lycopersicum HOM05D007031 ORTHO05D008815 3.7e-54 215.3 140 70.0
Sopen08g003330 Solanum pennellii HOM05D007031 ORTHO05D008815 3.7e-54 215.3 140 70.0
FAN18G3883 Fragaria x ananassa HOM05D007031 ORTHO05D008815 8.2e-54 214.2 145 71.0
FvH4_5g18810 Fragaria vesca HOM05D007031 ORTHO05D008815 1.4e-53 213.4 142 71.8
A01p20650 Brassica napus HOM05D007031 ORTHO05D008815 1.8e-53 213.0 125 80.8
Lj2A217G30 Lonicera japonica HOM05D007031 ORTHO05D008815 4.1e-53 211.8 148 68.9
Potri.003G076400 Populus trichocarpa HOM05D007031 ORTHO05D008815 4.1e-53 211.8 142 69.7
FAN08G1843 Fragaria x ananassa HOM05D007031 ORTHO05D008815 5.3e-53 211.5 148 70.3
C01p26150 Brassica napus HOM05D007031 ORTHO05D008815 6.9e-53 211.1 120 82.5
Cfa012711 Carpinus fangiana HOM05D007031 ORTHO05D008815 9.1e-53 210.7 142 71.1
FAN13G0327 Fragaria x ananassa HOM05D007031 ORTHO05D008815 9.1e-53 210.7 145 70.3
CANSAT21G0077 Cannabis sativa HOM05D007031 ORTHO05D008815 1.5e-52 209.9 144 68.1
PSO386G0128 Papaver somniferum HOM05D007031 ORTHO05D008815 1.5e-52 209.9 143 67.8
Sp7g15180 Schrenkiella parvula HOM05D007031 ORTHO05D008815 1.5e-52 209.9 142 73.2
arahy.Tifrunner.gnm1.ann1.R85P7C Arachis hypogaea HOM05D007031 ORTHO05D008815 2.0e-52 209.5 142 68.3
arahy.Tifrunner.gnm1.ann1.WL6NYT Arachis hypogaea HOM05D007031 ORTHO05D008815 3.4e-52 208.8 142 67.6
Lalb_Chr09g0324411 Lupinus albus HOM05D007031 ORTHO05D008815 4.5e-52 208.4 139 71.2
Sed0003740 Sechium edule HOM05D007031 ORTHO05D008815 4.5e-52 208.4 141 69.5
CAN.G1227.14 Capsicum annuum HOM05D007031 ORTHO05D008815 5.9e-52 208.0 144 68.1
Actinidia14432 Actinidia chinensis HOM05D007031 ORTHO05D008815 1.0e-51 207.2 144 68.1
ECA232G3888 Erigeron canadensis HOM05D007031 ORTHO05D008815 1.0e-51 207.2 143 66.4
Gohir.A08G170700 Gossypium hirsutum HOM05D007031 ORTHO05D008815 1.0e-51 207.2 147 67.3
PSO724G0679 Papaver somniferum HOM05D007031 ORTHO05D008815 1.3e-51 206.8 135 68.1
CDE09G0628 Ceratophyllum demersum HOM05D005321 ORTHO05D006360 1.7e-51 206.5 136 69.9
Aqoxy5G01014 Aquilegia oxysepala HOM05D007031 ORTHO05D008815 2.9e-51 205.7 142 68.3
DCAR_027778 Daucus carota HOM05D007031 ORTHO05D008815 8.5e-51 204.1 136 69.1
HPP92_021039 Vanilla planifolia HOM05D007031 ORTHO05D008815 3.2e-50 202.2 142 65.5
CiPaw.12G109600 Carya illinoinensis HOM05D007031 ORTHO05D008815 4.2e-50 201.8 144 66.7
CsaV3_5G004200 Cucumis sativus L. HOM05D007031 ORTHO05D008815 5.5e-50 201.4 141 68.8
BolC7t45328H Brassica oleracea HOM05D007031 ORTHO05D008815 7.2e-50 201.1 135 73.3
Phvul.002G062701 Phaseolus vulgaris HOM05D007031 ORTHO05D008815 7.2e-50 201.1 144 67.4
HPP92_027426 Vanilla planifolia HOM05D007031 ORTHO05D008815 7.2e-50 201.1 142 64.8
Lj2g0002187 Lotus japonicus HOM05D007031 ORTHO05D008815 2.1e-49 199.5 137 67.2
CSS0002961 Camellia sinensis var. sinensis HOM05D007031 ORTHO05D008815 4.7e-49 198.4 145 66.2
unitig_699.g19776 Utricularia gibba HOM05D007031 ORTHO05D008815 4.7e-49 198.4 126 74.6
Glyma.11G032300 Glycine max HOM05D007031 ORTHO05D008815 6.1e-49 198.0 144 66.0
TPR.G25905 Trifolium pratense HOM05D007031 ORTHO05D008815 8.0e-49 197.6 141 66.0
Psat2g177560 Pisum sativum HOM05D007031 ORTHO05D008815 1.0e-48 197.2 141 65.2
Os04g0535400 Oryza sativa ssp. japonica HOM05D007031 ORTHO05D008815 1.1e-47 193.7 137 66.4
Atru.chr9.1322 Acer truncatum HOM05D007031 ORTHO05D008815 2.0e-47 193.0 116 76.7
ClCG01G004020 Citrullus lanatus HOM05D007031 ORTHO05D008815 2.0e-47 193.0 169 57.4
Hma1.2p1_0316F.1_g123210 Hydrangea macrophylla HOM05D007031 ORTHO05D008815 2.6e-47 192.6 118 75.4
EL10Ac5g13074 Beta vulgaris HOM05D007031 ORTHO05D008815 5.7e-47 191.4 172 56.4
ATR0317G125 Amborella trichopoda HOM05D007031 ORTHO05D008815 6.3e-46 188.0 138 63.8
Peaxi162Scf00102g01143 Petunia axillaris HOM05D007031 ORTHO05D008815 6.3e-46 188.0 117 74.4
MBI04_g09491_MAGBIO Magnolia biondii HOM05D007031 ORTHO05D008815 2.4e-45 186.0 117 75.2
SEGI_08804 Sequoiadendron giganteum HOM05D007031 ORTHO05D008815 9.1e-45 184.1 136 63.2
MD04G1063700 Malus domestica HOM05D007031 ORTHO05D008815 3.2e-42 175.6 115 71.3
vmacro16391 Vaccinium macrocarpon HOM05D007031 ORTHO05D008815 4.2e-42 175.3 104 76.9
Sabra03G0047000 Salix brachista HOM05D007031 ORTHO05D008815 5.5e-42 174.9 159 56.6
Manes.02G039100 Manihot esculenta HOM05D007031 ORTHO05D008815 2.7e-41 172.6 114 70.2
FAN14G5160 Fragaria x ananassa HOM05D007031 ORTHO05D008815 8.0e-41 171.0 143 60.1
AUR62042788 Chenopodium quinoa HOM05D007031 ORTHO05D008815 6.7e-40 167.9 108 73.1
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 8.8e-40 167.5 136 62.5
Hund14533 Selenicereus undatus HOM05D007031 ORTHO05D008815 2.6e-39 166.0 101 78.2
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 5.7e-39 164.9 115 70.4
QL12p012249 Quercus lobata HOM05D007031 ORTHO05D008815 2.2e-38 162.9 253 39.1
VMungo1215G1202 Vigna mungo HOM05D007031 ORTHO05D008815 6.3e-38 161.4 140 57.9
MELO3C005535.2 Cucumis melo HOM05D007031 ORTHO05D008815 1.4e-37 160.2 101 76.2
BcaC06g33496 Brassica carinata HOM05D007031 ORTHO05D008815 9.1e-37 157.5 114 69.3
Zm00001eb427450 Zea mays HOM05D007031 ORTHO05D008815 5.0e-35 151.8 101 65.3
THA.LOC104815507 Tarenaya hassleriana HOM05D007031 ORTHO05D008815 3.6e-33 145.6 94 74.5
Prupe.5G068700 Prunus persica HOM05D007031 ORTHO05D008815 4.7e-33 145.2 141 53.2
CSS0026472 Camellia sinensis var. sinensis HOM05D007031 ORTHO05D008815 1.8e-32 143.3 142 52.1
SMO274G0074 Selaginella moellendorffii HOM05D007031 ORTHO05D008815 1.8e-32 143.3 141 48.9
CiPaw.11G153700 Carya illinoinensis HOM05D007031 ORTHO05D008815 4.0e-32 142.1 109 65.1
Nitab4.5_0000712g0190 Nicotiana tabacum HOM05D007031 ORTHO05D008815 4.0e-32 142.1 162 48.8
AUR62007512 Chenopodium quinoa HOM05D007031 ORTHO05D008815 4.4e-31 138.7 89 71.9
FAN02G0786 Fragaria x ananassa HOM05D007031 ORTHO05D008815 9.8e-31 137.5 104 65.4
Pp3c5_26880 Physcomitrium patens HOM05D007031 ORTHO05D008815 2.4e-29 132.9 141 44.7
SMO134G0120 Selaginella moellendorffii HOM05D000076 ORTHO05D001279 2.4e-29 132.9 115 53.0
Oeu062969.1 Olea europaea HOM05D007031 ORTHO05D008815 4.1e-29 132.1 142 45.1
Sc22g0000840 Simmondsia chinensis HOM05D007031 ORTHO05D008815 2.0e-28 129.8 83 77.1
GSVIVG01001319001 Vitis vinifera HOM05D007031 ORTHO05D008815 3.8e-27 125.6 86 68.6
Nn6g33971 Nelumbo nucifera HOM05D007031 ORTHO05D008815 4.2e-26 122.1 117 53.8
FAN04G1478 Fragaria x ananassa HOM05D007031 ORTHO05D008815 7.2e-26 121.3 83 71.1
SalBow6G3941 Salvia bowleyana HOM05D007031 ORTHO05D008815 1.4e-24 117.1 99 58.6
Haze_07923 Corylus avellana HOM05D007031 ORTHO05D008815 2.3e-24 116.3 147 46.3
MCO15G691 Micromonas commoda HOM05D007031 ORTHO05D008815 7.5e-23 111.3 122 42.6
Cre03.g169200 Chlamydomonas reinhardtii HOM05D007031 ORTHO05D008815 1.4e-21 107.1 114 46.5
Thecc.03G252200 Theobroma cacao HOM05D007031 ORTHO05D008815 4.1e-21 105.5 81 61.7
Pp3c6_3420 Physcomitrium patens HOM05D029721 ORTHO05D008815 7.0e-21 104.8 127 45.7
Nitab4.5_0002225g0110 Nicotiana tabacum HOM05D007031 ORTHO05D008815 3.8e-19 99.0 130 46.9
SEGI_18261 Sequoiadendron giganteum HOM05D007031 ORTHO05D008815 1.5e-18 97.1 90 54.4
Medtr5g012525 Medicago truncatula HOM05D007031 ORTHO05D008815 1.6e-17 93.6 60 71.7
FAN05G5584 Fragaria x ananassa HOM05D007031 ORTHO05D008815 1.5e-15 87.0 59 71.2
COL.COLO4_37184 Corchorus olitorius HOM05D007031 ORTHO05D008815 4.0e-08 62.4 45 64.4
Haze_07922 Corylus avellana HOM05D007031 ORTHO05D008815 2.9e-06 56.2 38 63.2
Hund14535 Selenicereus undatus HOM05D007031 ORTHO05D008815 3.7e-06 55.8 39 61.5
Haze_26654 Corylus avellana HOM05D002397 ORTHO05D002667 6.4e-06 55.1 99 31.3


User provided reference genes

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