Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G16560 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 0.0e+00 1105.1 533 100.0
AT4G16550 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 2.6e-135 486.5 298 82.2
AL7G38280 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 7.9e-124 448.4 298 76.2
AL7G38300 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 5.9e-111 405.6 534 45.3
Carub.0007s2487 Capsella rubella HOM05D007337 ORTHO05D004972 2.0e-106 390.6 298 66.8
Sp7g15160 Schrenkiella parvula HOM05D007337 ORTHO05D004972 9.8e-98 361.7 300 61.0
Thhalv10026955m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 5.4e-96 355.9 298 61.4
BraA03t14091Z Brassica rapa HOM05D007337 ORTHO05D004972 2.5e-93 347.1 547 40.8
CARHR223030 Cardamine hirsuta HOM05D007337 ORTHO05D004972 2.7e-92 343.6 300 61.0
BcaNung02864 Brassica carinata HOM05D007337 ORTHO05D004972 1.6e-84 317.8 286 58.0
BcaC06g33494 Brassica carinata HOM05D007337 ORTHO05D004972 3.2e-80 303.5 299 54.8
A03p49990 Brassica napus HOM05D007337 ORTHO05D004972 1.7e-78 297.7 299 53.2
BolC2t09369H Brassica oleracea HOM05D007337 ORTHO05D004972 2.3e-75 287.3 298 51.7
BcaC03g15651 Brassica carinata HOM05D007337 ORTHO05D004972 4.9e-73 279.6 283 52.7
Carub.0007s2488 Capsella rubella HOM05D007337 ORTHO05D004972 1.4e-67 261.5 299 49.2
C02p33330 Brassica napus HOM05D007337 ORTHO05D004972 1.0e-62 245.4 298 47.7
A02p20510 Brassica napus HOM05D007337 ORTHO05D004972 1.7e-62 244.6 298 47.7
Aa31LG2G12670 Aethionema arabicum HOM05D007337 ORTHO05D004972 9.2e-56 222.2 296 42.2
BcaNung02865 Brassica carinata HOM05D007337 ORTHO05D004972 2.8e-52 210.7 302 41.7
AT4G16545 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 3.1e-51 207.2 301 40.5
A03p49980 Brassica napus HOM05D007337 ORTHO05D004972 3.1e-51 207.2 302 40.7
BcaC06g33493 Brassica carinata HOM05D007337 ORTHO05D004972 2.6e-50 204.1 302 40.7
Thhalv10026831m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 3.4e-50 203.8 302 40.1
Carub.0007s2493 Capsella rubella HOM05D007337 ORTHO05D004972 7.6e-50 202.6 302 41.1
C01p26190 Brassica napus HOM05D007337 ORTHO05D004972 2.7e-47 194.1 303 42.2
BcaC07g37998 Brassica carinata HOM05D007337 ORTHO05D004972 1.7e-46 191.4 302 37.4
C07p48020 Brassica napus HOM05D007337 ORTHO05D004972 1.1e-45 188.7 259 43.6
AL1G32140 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.9e-45 188.0 297 37.7
THA.LOC104815492 Tarenaya hassleriana HOM05D007337 ORTHO05D004972 2.5e-45 187.6 298 37.9
BolC7t45326H Brassica oleracea HOM05D007337 ORTHO05D004972 4.3e-45 186.8 249 45.4
Thhalv10000293m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 7.3e-45 186.0 302 38.4
BolC8t48380H Brassica oleracea HOM05D007337 ORTHO05D004972 4.8e-44 183.3 303 37.0
BraA01t02004Z Brassica rapa HOM05D007337 ORTHO05D004972 4.8e-44 183.3 302 39.7
BcaNung00177 Brassica carinata HOM05D007337 ORTHO05D004972 8.1e-44 182.6 289 38.8
A08p12570 Brassica napus HOM05D007337 ORTHO05D004972 2.4e-43 181.0 303 36.6
BraA08t33248Z Brassica rapa HOM05D007337 ORTHO05D004972 2.4e-43 181.0 303 36.6
A01p20860 Brassica napus HOM05D007337 ORTHO05D004972 9.0e-43 179.1 302 38.1
BolC1t02562H Brassica oleracea HOM05D007337 ORTHO05D004972 1.5e-42 178.3 302 39.1
BcaC09g50365 Brassica carinata HOM05D007337 ORTHO05D004972 4.4e-42 176.8 289 38.8
BcaC09g50366 Brassica carinata HOM05D007337 ORTHO05D004972 7.6e-42 176.0 289 38.1
BcaNung00176 Brassica carinata HOM05D007337 ORTHO05D004972 7.6e-42 176.0 289 38.1
Thhalv10026050m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 6.4e-41 172.9 290 37.9
Sp7g15140 Schrenkiella parvula HOM05D007337 ORTHO05D004972 7.1e-40 169.5 289 37.0
Carub.0007s2489 Capsella rubella HOM05D007337 ORTHO05D004972 2.8e-36 157.5 311 34.4
Carub.0007s2491 Capsella rubella HOM05D007337 ORTHO05D004972 1.4e-35 155.2 311 33.4
CARHR223020 Cardamine hirsuta HOM05D007337 ORTHO05D004972 2.6e-34 151.0 313 35.5
AL7G38320 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 3.4e-34 150.6 275 36.7
AT2G03020 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 4.5e-34 150.2 263 38.4
C03p31540 Brassica napus HOM05D007337 ORTHO05D004972 9.9e-34 149.1 288 35.1
BolC3t15498H Brassica oleracea HOM05D007337 ORTHO05D004972 3.8e-33 147.1 288 34.7
Thhalv10026211m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 2.4e-32 144.4 265 34.0
Sp7g15120 Schrenkiella parvula HOM05D007337 ORTHO05D004972 2.3e-30 137.9 289 31.5
C07p48000 Brassica napus HOM05D007337 ORTHO05D004972 6.7e-30 136.3 290 33.8
BcaC01g04975 Brassica carinata HOM05D007337 ORTHO05D004972 4.8e-28 130.2 288 31.2
Thecc.03G253000 Theobroma cacao HOM05D008086 ORTHO05D004972 9.0e-27 125.9 111 52.3
Sp7g15150 Schrenkiella parvula HOM05D007337 ORTHO05D004972 2.6e-26 124.4 253 35.2
BcaC03g13098 Brassica carinata HOM05D007337 ORTHO05D004972 1.3e-25 122.1 263 33.8
A03p49960 Brassica napus HOM05D007337 ORTHO05D004972 2.2e-25 121.3 307 31.6
BraA03t14088Z Brassica rapa HOM05D007337 ORTHO05D004972 2.2e-25 121.3 307 31.6
Sp7g15130 Schrenkiella parvula HOM05D007337 ORTHO05D004972 2.2e-25 121.3 259 33.2
BcaC06g33490 Brassica carinata HOM05D007337 ORTHO05D004972 3.8e-25 120.6 293 30.7
AL7G38340 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 9.3e-24 115.9 302 28.8
CARHR222970 Cardamine hirsuta HOM05D007337 ORTHO05D004972 9.3e-24 115.9 116 47.4
BolC7t45327H Brassica oleracea HOM05D007337 ORTHO05D004972 6.0e-23 113.2 278 33.1
BcaC06g33495 Brassica carinata HOM05D007337 ORTHO05D004972 1.0e-22 112.5 118 50.0
BcaNung02862 Brassica carinata HOM05D007337 ORTHO05D004972 1.0e-22 112.5 118 50.0
BcaC06g33497 Brassica carinata HOM05D007337 ORTHO05D004972 5.1e-22 110.2 133 43.6
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 1.5e-21 108.6 98 56.1
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 1.5e-21 108.6 98 56.1
AT4G16540 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 2.1e-20 104.8 123 43.9
A01p20850 Brassica napus HOM05D007337 ORTHO05D004972 2.1e-20 104.8 119 43.7
BraA01t02003Z Brassica rapa HOM05D007337 ORTHO05D004972 3.7e-20 104.0 119 43.7
BolC2t05997H Brassica oleracea HOM05D007337 ORTHO05D004972 4.8e-20 103.6 206 35.4
BcaC09g50370 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-19 102.4 126 42.1
C01p26180 Brassica napus HOM05D007337 ORTHO05D004972 1.1e-19 102.4 126 42.1
BolC1t02561H Brassica oleracea HOM05D007337 ORTHO05D004972 1.1e-19 102.4 126 42.1
AL7G38310 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.4e-19 102.1 131 42.7
BcaC09g50368 Brassica carinata HOM05D007337 ORTHO05D004972 3.1e-19 100.9 121 42.1
BcaNung00175 Brassica carinata HOM05D007337 ORTHO05D004972 3.1e-19 100.9 121 42.1
AT4G16555 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 5.3e-19 100.1 161 36.6
BcaC06g33489 Brassica carinata HOM05D007337 ORTHO05D004972 1.0e-17 95.9 238 31.9
Carub.0007s2492 Capsella rubella HOM05D007337 ORTHO05D004972 1.7e-17 95.1 99 52.5
THA.LOC104798375 Tarenaya hassleriana HOM05D008086 ORTHO05D004972 1.7e-17 95.1 114 39.5
BolC7t45324H Brassica oleracea HOM05D007337 ORTHO05D004972 3.8e-17 94.0 271 32.5
CARHR173730 Cardamine hirsuta HOM05D008086 ORTHO05D004972 3.8e-17 94.0 110 43.6
CARHR173760 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.4e-16 92.0 116 39.7
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 1.9e-16 91.7 114 41.2
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 1.9e-16 91.7 114 41.2
BolC7t45302H Brassica oleracea HOM05D007337 ORTHO05D004972 3.2e-16 90.9 253 29.2
BraA06t27366Z Brassica rapa HOM05D008086 ORTHO05D004972 3.2e-16 90.9 118 39.0
AT5G47590 Arabidopsis thaliana HOM05D008086 ORTHO05D004972 9.3e-16 89.4 114 40.4
C07p47780 Brassica napus HOM05D007337 ORTHO05D004972 9.3e-16 89.4 247 32.0
AL8G10380 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 1.2e-15 89.0 187 34.8
Carub.0008s0020 Capsella rubella HOM05D008086 ORTHO05D004972 1.2e-15 89.0 116 41.4
BcaC06g34237 Brassica carinata HOM05D008086 ORTHO05D004972 2.1e-15 88.2 264 25.8
BcaC06g31366 Brassica carinata HOM05D008086 ORTHO05D004972 2.7e-15 87.8 112 38.4
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 4.6e-15 87.0 118 37.3
AL8G10360 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 6.1e-15 86.7 115 40.9
BcaC06g33478 Brassica carinata HOM05D007337 ORTHO05D004972 6.1e-15 86.7 251 28.7
Aa31LG9G5430 Aethionema arabicum HOM05D008086 ORTHO05D004972 1.3e-14 85.5 108 41.7
A03p49970 Brassica napus HOM05D007337 ORTHO05D004972 1.3e-14 85.5 248 30.2
BraA03t14089Z Brassica rapa HOM05D007337 ORTHO05D004972 1.3e-14 85.5 247 30.4
C07p31290 Brassica napus HOM05D008086 ORTHO05D004972 1.8e-14 85.1 117 35.0
CARHR174690 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.3e-14 84.7 109 40.4
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 3.0e-14 84.3 118 37.3
A06p44950 Brassica napus HOM05D008086 ORTHO05D004972 3.9e-14 84.0 108 40.7
C07p47990 Brassica napus HOM05D007337 ORTHO05D004972 5.1e-14 83.6 301 26.9
BolC7t43666H Brassica oleracea HOM05D008086 ORTHO05D004972 5.1e-14 83.6 117 35.9
QL12p012461 Quercus lobata HOM05D008086 ORTHO05D004972 5.1e-14 83.6 107 39.3
BcaC06g31364 Brassica carinata HOM05D008086 ORTHO05D004972 6.7e-14 83.2 117 36.8
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 6.7e-14 83.2 114 40.4
C07p31250 Brassica napus HOM05D008086 ORTHO05D004972 6.7e-14 83.2 117 35.9
BcaC06g31429 Brassica carinata HOM05D008086 ORTHO05D004972 8.7e-14 82.8 122 38.5
A06p44930 Brassica napus HOM05D008086 ORTHO05D004972 8.7e-14 82.8 117 35.9
BraA06t27364Z Brassica rapa HOM05D008086 ORTHO05D004972 8.7e-14 82.8 117 35.9
BolC9t58045H Brassica oleracea HOM05D008086 ORTHO05D004972 1.1e-13 82.4 115 37.4
BcaC04g19776 Brassica carinata HOM05D008086 ORTHO05D004972 1.5e-13 82.0 115 37.4
C09p51830 Brassica napus HOM05D008086 ORTHO05D004972 1.5e-13 82.0 115 37.4
BcaC06g34235 Brassica carinata HOM05D008086 ORTHO05D004972 1.9e-13 81.6 108 37.0
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 1.9e-13 81.6 115 37.4
CARHR223010 Cardamine hirsuta HOM05D007337 ORTHO05D004972 1.9e-13 81.6 88 47.7
QL12p012450 Quercus lobata HOM05D007337 ORTHO05D004972 1.9e-13 81.6 103 38.8
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 2.5e-13 81.3 122 36.1
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 3.3e-13 80.9 118 37.3
BcaC06g31340 Brassica carinata HOM05D008086 ORTHO05D004972 4.3e-13 80.5 122 37.7
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 5.7e-13 80.1 114 39.5
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 5.7e-13 80.1 114 39.5
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 5.7e-13 80.1 114 39.5
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 5.7e-13 80.1 123 37.4
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 9.7e-13 79.3 117 40.2
BraA03t14092Z Brassica rapa HOM05D007337 ORTHO05D004972 9.7e-13 79.3 90 47.8
BolC2t10802H Brassica oleracea HOM05D008086 ORTHO05D004972 1.3e-12 79.0 109 42.2
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 1.3e-12 79.0 122 36.1
Thhalv10001213m.g Eutrema salsugineum HOM05D008086 ORTHO05D004972 1.3e-12 79.0 106 39.6
BcaC06g31356 Brassica carinata HOM05D008086 ORTHO05D004972 1.6e-12 78.6 117 35.0
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 1.6e-12 78.6 116 36.2
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 2.2e-12 78.2 115 38.3
CARHR215530 Cardamine hirsuta HOM05D007337 ORTHO05D004972 2.2e-12 78.2 86 48.8
Actinidia02125 Actinidia chinensis HOM05D001099 ORTHO05D000958 2.8e-12 77.8 101 42.6
C07p30570 Brassica napus HOM05D008086 ORTHO05D004972 2.8e-12 77.8 115 38.3
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 4.8e-12 77.0 123 37.4
BcaNung02867 Brassica carinata HOM05D007337 ORTHO05D004972 2.4e-11 74.7 103 41.7
BcaNung07056 Brassica carinata HOM05D008086 ORTHO05D004972 3.1e-11 74.3 113 38.9
BcaC03g16909 Brassica carinata HOM05D008086 ORTHO05D004972 4.1e-11 73.9 104 36.5
BolC2t10843H Brassica oleracea HOM05D008086 ORTHO05D004972 4.1e-11 73.9 104 36.5
BolC7t45322H Brassica oleracea HOM05D007337 ORTHO05D004972 4.1e-11 73.9 81 48.1
BcaC09g50367 Brassica carinata HOM05D007337 ORTHO05D004972 6.9e-11 73.2 86 44.2
Rhsim09G0039000 Rhododendron simsii HOM05D007337 ORTHO05D000958 5.9e-10 70.1 100 41.0
BraA02t08071Z Brassica rapa HOM05D008086 ORTHO05D004972 1.0e-09 69.3 106 37.7
Nitab4.5_0000312g0140 Nicotiana tabacum HOM05D001099 ORTHO05D010560 2.9e-09 67.8 264 25.4
BcaNung00180 Brassica carinata HOM05D007337 ORTHO05D004972 6.5e-09 66.6 57 57.9
COL.COLO4_37190 Corchorus olitorius HOM05D007337 ORTHO05D010560 8.5e-09 66.2 100 37.0
BolC7t45323H Brassica oleracea HOM05D007337 ORTHO05D004972 1.4e-08 65.5 89 43.8
CARHR173740 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.4e-08 65.5 97 37.1
QL12p012439 Quercus lobata HOM05D001099 ORTHO05D000958 3.2e-08 64.3 97 34.0
C07p47770 Brassica napus HOM05D007337 ORTHO05D004972 7.9e-07 59.7 48 50.0
BcaC06g34304 Brassica carinata HOM05D008086 ORTHO05D004972 3.9e-06 57.4 79 36.7
C02p47660 Brassica napus HOM05D008086 ORTHO05D004972 3.9e-06 57.4 93 37.6


User provided reference genes

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