Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G16550 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 9.4e-158 560.1 268 100.0
AL7G38280 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.0e-140 503.4 261 92.0
AT4G16560 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.0e-135 486.9 298 82.2
Carub.0007s2487 Capsella rubella HOM05D007337 ORTHO05D004972 3.7e-122 441.8 261 80.5
AL7G38300 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.1e-118 430.3 268 78.4
Sp7g15160 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.2e-112 410.2 263 73.4
CARHR223030 Cardamine hirsuta HOM05D007337 ORTHO05D004972 5.8e-107 391.3 263 73.8
Thhalv10026955m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 8.1e-101 370.9 290 64.5
BcaNung02864 Brassica carinata HOM05D007337 ORTHO05D004972 5.2e-100 368.2 249 71.5
A03p49990 Brassica napus HOM05D007337 ORTHO05D004972 4.4e-91 338.6 262 64.1
BolC2t09369H Brassica oleracea HOM05D007337 ORTHO05D004972 1.0e-87 327.4 264 61.7
BcaC06g33494 Brassica carinata HOM05D007337 ORTHO05D004972 5.1e-87 325.1 277 60.3
BcaC03g15651 Brassica carinata HOM05D007337 ORTHO05D004972 2.1e-85 319.7 249 63.5
Carub.0007s2488 Capsella rubella HOM05D007337 ORTHO05D004972 1.1e-81 307.4 265 59.6
BraA03t14091Z Brassica rapa HOM05D007337 ORTHO05D004972 9.0e-76 287.7 395 44.1
C02p33330 Brassica napus HOM05D007337 ORTHO05D004972 8.4e-74 281.2 261 56.7
A02p20510 Brassica napus HOM05D007337 ORTHO05D004972 1.4e-73 280.4 261 56.7
Aa31LG2G12670 Aethionema arabicum HOM05D007337 ORTHO05D004972 2.7e-64 249.6 257 50.6
BcaNung02865 Brassica carinata HOM05D007337 ORTHO05D004972 5.9e-59 231.9 257 48.6
AT4G16545 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.7e-58 230.3 258 48.4
A03p49980 Brassica napus HOM05D007337 ORTHO05D004972 5.0e-58 228.8 257 47.1
BcaC06g33493 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-57 227.6 257 47.9
Carub.0007s2493 Capsella rubella HOM05D007337 ORTHO05D004972 7.2e-57 224.9 258 48.4
Thhalv10026831m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.6e-56 223.8 258 46.9
BcaC07g37998 Brassica carinata HOM05D007337 ORTHO05D004972 3.3e-54 216.1 257 44.4
THA.LOC104815492 Tarenaya hassleriana HOM05D007337 ORTHO05D004972 1.7e-53 213.8 257 45.1
AL1G32140 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 3.1e-52 209.5 255 44.3
Thhalv10000293m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 5.3e-52 208.8 256 45.3
BolC8t48380H Brassica oleracea HOM05D007337 ORTHO05D004972 6.9e-52 208.4 258 43.8
A08p12570 Brassica napus HOM05D007337 ORTHO05D004972 3.4e-51 206.1 258 43.4
BraA08t33248Z Brassica rapa HOM05D007337 ORTHO05D004972 3.4e-51 206.1 258 43.4
BcaNung00177 Brassica carinata HOM05D007337 ORTHO05D004972 1.7e-50 203.8 245 46.1
BraA01t02004Z Brassica rapa HOM05D007337 ORTHO05D004972 3.8e-50 202.6 259 45.9
BcaC09g50366 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-49 201.1 244 46.3
BcaNung00176 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-49 201.1 244 46.3
A01p20860 Brassica napus HOM05D007337 ORTHO05D004972 5.5e-49 198.7 260 44.2
C01p26190 Brassica napus HOM05D007337 ORTHO05D004972 1.2e-48 197.6 267 42.3
BolC1t02562H Brassica oleracea HOM05D007337 ORTHO05D004972 3.6e-48 196.1 259 44.8
BcaC09g50365 Brassica carinata HOM05D007337 ORTHO05D004972 6.1e-48 195.3 246 45.9
AT2G03020 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 6.7e-47 191.8 258 42.2
Thhalv10026050m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 2.0e-46 190.3 245 44.9
AL7G38320 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 2.2e-45 186.8 261 40.2
Sp7g15130 Schrenkiella parvula HOM05D007337 ORTHO05D004972 6.3e-45 185.3 258 41.1
Carub.0007s2489 Capsella rubella HOM05D007337 ORTHO05D004972 3.1e-44 183.0 267 39.3
Sp7g15140 Schrenkiella parvula HOM05D007337 ORTHO05D004972 9.1e-44 181.4 235 42.6
Carub.0007s2491 Capsella rubella HOM05D007337 ORTHO05D004972 3.8e-42 176.0 265 38.9
CARHR223020 Cardamine hirsuta HOM05D007337 ORTHO05D004972 8.5e-42 174.9 271 39.9
Thhalv10026211m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.0e-39 167.9 218 42.7
BcaC03g13098 Brassica carinata HOM05D007337 ORTHO05D004972 1.4e-39 167.5 254 39.4
C03p31540 Brassica napus HOM05D007337 ORTHO05D004972 1.4e-39 167.5 243 40.7
Sp7g15150 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.8e-39 167.2 244 41.0
BolC3t15498H Brassica oleracea HOM05D007337 ORTHO05D004972 1.1e-38 164.5 241 40.7
Sp7g15120 Schrenkiella parvula HOM05D007337 ORTHO05D004972 3.3e-38 162.9 242 38.0
BcaC06g33497 Brassica carinata HOM05D007337 ORTHO05D004972 2.2e-37 160.2 257 38.5
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 3.1e-36 156.4 237 42.6
BcaC01g04975 Brassica carinata HOM05D007337 ORTHO05D004972 7.0e-36 155.2 243 37.9
BcaC06g33495 Brassica carinata HOM05D007337 ORTHO05D004972 5.9e-35 152.1 257 37.4
BcaNung02862 Brassica carinata HOM05D007337 ORTHO05D004972 5.9e-35 152.1 257 37.4
BolC7t45324H Brassica oleracea HOM05D007337 ORTHO05D004972 2.9e-34 149.8 241 41.5
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 5.0e-34 149.1 237 42.2
C07p48000 Brassica napus HOM05D007337 ORTHO05D004972 1.5e-33 147.5 251 39.4
BraA01t02003Z Brassica rapa HOM05D007337 ORTHO05D004972 2.5e-33 146.7 252 34.9
C07p48020 Brassica napus HOM05D007337 ORTHO05D004972 5.5e-33 145.6 138 51.4
BcaC06g33490 Brassica carinata HOM05D007337 ORTHO05D004972 1.2e-32 144.4 244 37.7
BolC7t45326H Brassica oleracea HOM05D007337 ORTHO05D004972 1.6e-32 144.1 140 50.0
BcaC09g50370 Brassica carinata HOM05D007337 ORTHO05D004972 2.1e-32 143.7 252 34.5
C01p26180 Brassica napus HOM05D007337 ORTHO05D004972 2.1e-32 143.7 255 36.1
BolC1t02561H Brassica oleracea HOM05D007337 ORTHO05D004972 2.1e-32 143.7 252 34.5
A01p20850 Brassica napus HOM05D007337 ORTHO05D004972 3.6e-32 142.9 254 35.4
A03p49960 Brassica napus HOM05D007337 ORTHO05D004972 3.6e-32 142.9 249 36.9
BraA03t14088Z Brassica rapa HOM05D007337 ORTHO05D004972 3.6e-32 142.9 249 36.9
BraA03t14089Z Brassica rapa HOM05D007337 ORTHO05D004972 2.3e-31 140.2 241 37.3
A03p49970 Brassica napus HOM05D007337 ORTHO05D004972 5.2e-31 139.0 240 37.5
AL7G38340 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.2e-30 137.9 257 34.6
AL7G38310 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.3e-29 134.4 270 35.9
BcaC09g50368 Brassica carinata HOM05D007337 ORTHO05D004972 2.2e-29 133.7 251 34.3
BcaNung00175 Brassica carinata HOM05D007337 ORTHO05D004972 2.2e-29 133.7 251 34.3
C07p47780 Brassica napus HOM05D007337 ORTHO05D004972 6.3e-29 132.1 244 35.2
BolC7t45302H Brassica oleracea HOM05D007337 ORTHO05D004972 6.3e-29 132.1 247 36.4
BolC7t45327H Brassica oleracea HOM05D007337 ORTHO05D004972 8.3e-29 131.7 233 38.6
BcaC06g33489 Brassica carinata HOM05D007337 ORTHO05D004972 3.1e-28 129.8 243 35.4
BcaC06g33478 Brassica carinata HOM05D007337 ORTHO05D004972 3.5e-27 126.3 241 36.1
Thecc.03G253000 Theobroma cacao HOM05D008086 ORTHO05D004972 3.5e-27 126.3 111 52.3
BolC2t05997H Brassica oleracea HOM05D007337 ORTHO05D004972 1.0e-26 124.8 184 39.1
CARHR222970 Cardamine hirsuta HOM05D007337 ORTHO05D004972 3.6e-24 116.3 116 47.4
BcaC06g34237 Brassica carinata HOM05D008086 ORTHO05D004972 4.0e-23 112.8 250 28.0
CARHR173730 Cardamine hirsuta HOM05D008086 ORTHO05D004972 5.2e-23 112.5 240 31.2
THA.LOC104798375 Tarenaya hassleriana HOM05D008086 ORTHO05D004972 1.5e-22 110.9 257 28.4
BcaC06g31366 Brassica carinata HOM05D008086 ORTHO05D004972 2.0e-22 110.5 242 28.9
CARHR173760 Cardamine hirsuta HOM05D008086 ORTHO05D004972 9.8e-22 108.2 244 29.5
C07p31290 Brassica napus HOM05D008086 ORTHO05D004972 4.8e-21 105.9 250 26.8
AT4G16540 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 6.3e-21 105.5 123 43.9
QL12p012450 Quercus lobata HOM05D007337 ORTHO05D004972 6.3e-21 105.5 235 31.5
BraA06t27366Z Brassica rapa HOM05D008086 ORTHO05D004972 1.8e-20 104.0 244 28.3
AL8G10380 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 2.4e-20 103.6 250 30.8
CARHR174690 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.4e-20 103.6 241 29.9
BcaC06g34235 Brassica carinata HOM05D008086 ORTHO05D004972 4.1e-20 102.8 241 27.4
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 7.0e-20 102.1 248 28.2
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 7.0e-20 102.1 245 29.4
BolC7t43666H Brassica oleracea HOM05D008086 ORTHO05D004972 7.0e-20 102.1 251 26.7
Aa31LG9G5430 Aethionema arabicum HOM05D008086 ORTHO05D004972 9.1e-20 101.7 244 29.9
BcaC06g31429 Brassica carinata HOM05D008086 ORTHO05D004972 1.2e-19 101.3 252 29.0
C07p31250 Brassica napus HOM05D008086 ORTHO05D004972 1.2e-19 101.3 251 26.7
Carub.0008s0020 Capsella rubella HOM05D008086 ORTHO05D004972 1.2e-19 101.3 248 30.2
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 2.0e-19 100.5 240 28.8
BcaC06g31340 Brassica carinata HOM05D008086 ORTHO05D004972 2.7e-19 100.1 261 28.4
BcaC06g31364 Brassica carinata HOM05D008086 ORTHO05D004972 2.7e-19 100.1 250 26.8
QL12p012461 Quercus lobata HOM05D008086 ORTHO05D004972 3.5e-19 99.8 240 30.4
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 7.7e-19 98.6 244 29.5
AT4G16555 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.0e-18 98.2 137 38.7
A06p44950 Brassica napus HOM05D008086 ORTHO05D004972 1.7e-18 97.4 234 28.6
Thhalv10001213m.g Eutrema salsugineum HOM05D008086 ORTHO05D004972 3.8e-18 96.3 239 28.0
AL8G10360 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 5.0e-18 95.9 239 29.7
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 5.0e-18 95.9 248 28.6
BcaC04g19776 Brassica carinata HOM05D008086 ORTHO05D004972 6.6e-18 95.5 249 26.9
C09p51830 Brassica napus HOM05D008086 ORTHO05D004972 6.6e-18 95.5 249 26.9
BcaC06g31356 Brassica carinata HOM05D008086 ORTHO05D004972 8.6e-18 95.1 257 26.5
A06p44930 Brassica napus HOM05D008086 ORTHO05D004972 8.6e-18 95.1 249 26.5
C07p30570 Brassica napus HOM05D008086 ORTHO05D004972 8.6e-18 95.1 245 29.4
BolC9t58045H Brassica oleracea HOM05D008086 ORTHO05D004972 8.6e-18 95.1 249 26.5
BraA06t27364Z Brassica rapa HOM05D008086 ORTHO05D004972 8.6e-18 95.1 249 26.5
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 1.5e-17 94.4 252 26.6
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 2.5e-17 93.6 251 27.1
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 2.5e-17 93.6 230 27.8
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 5.5e-17 92.4 259 26.6
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 1.2e-16 91.3 247 28.7
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 1.2e-16 91.3 247 28.7
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 1.2e-16 91.3 247 28.7
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.1e-16 90.5 252 27.4
AT5G47590 Arabidopsis thaliana HOM05D008086 ORTHO05D004972 3.6e-16 89.7 114 40.4
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 1.0e-15 88.2 249 30.1
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 1.4e-15 87.8 254 27.2
BcaNung07056 Brassica carinata HOM05D008086 ORTHO05D004972 2.3e-15 87.0 223 29.6
BcaC09g50367 Brassica carinata HOM05D007337 ORTHO05D004972 8.9e-15 85.1 182 33.5
BolC4t21835H Brassica oleracea HOM05D007337 ORTHO05D004972 1.5e-14 84.3 245 30.6
BolC4t21837H Brassica oleracea HOM05D007337 ORTHO05D004972 1.5e-14 84.3 245 30.6
BolC4t21838H Brassica oleracea HOM05D007337 ORTHO05D004972 1.5e-14 84.3 245 30.6
BcaC03g16909 Brassica carinata HOM05D008086 ORTHO05D004972 7.5e-14 82.0 239 25.9
BolC2t10802H Brassica oleracea HOM05D008086 ORTHO05D004972 7.5e-14 82.0 239 28.9
CARHR223010 Cardamine hirsuta HOM05D007337 ORTHO05D004972 9.8e-14 81.6 88 47.7
BolC2t10843H Brassica oleracea HOM05D008086 ORTHO05D004972 1.3e-13 81.3 239 25.5
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 2.8e-13 80.1 123 37.4
Carub.0007s2492 Capsella rubella HOM05D007337 ORTHO05D004972 4.9e-13 79.3 72 52.8
Nitab4.5_0000312g0140 Nicotiana tabacum HOM05D001099 ORTHO05D010560 6.3e-13 79.0 249 25.7
Actinidia02125 Actinidia chinensis HOM05D001099 ORTHO05D000958 1.1e-12 78.2 101 42.6
COL.COLO4_37190 Corchorus olitorius HOM05D007337 ORTHO05D010560 1.4e-12 77.8 222 30.2
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 2.4e-12 77.0 123 37.4
BraA02t08071Z Brassica rapa HOM05D008086 ORTHO05D004972 1.2e-11 74.7 237 25.7
CARHR173740 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.7e-11 73.6 244 24.2
CARHR215530 Cardamine hirsuta HOM05D007337 ORTHO05D004972 3.5e-11 73.2 61 57.4
A06p45430 Brassica napus HOM05D008086 ORTHO05D004972 5.9e-11 72.4 218 24.8
BcaNung00180 Brassica carinata HOM05D007337 ORTHO05D004972 1.0e-10 71.6 63 55.6
Rhsim09G0039000 Rhododendron simsii HOM05D007337 ORTHO05D000958 2.3e-10 70.5 100 41.0
Peaxi162Scf00002g00191 Petunia axillaris HOM05D001099 ORTHO05D000958 2.9e-10 70.1 229 25.3
BcaC06g34304 Brassica carinata HOM05D008086 ORTHO05D004972 6.6e-10 68.9 212 25.0
BraA03t14092Z Brassica rapa HOM05D007337 ORTHO05D004972 1.1e-09 68.2 65 52.3
BolC7t45323H Brassica oleracea HOM05D007337 ORTHO05D004972 7.3e-09 65.5 89 43.8
BcaB07g30809 Brassica carinata HOM05D008086 ORTHO05D004972 1.2e-08 64.7 224 25.4
Nitab4.5_0007598g0030 Nicotiana tabacum HOM05D001099 ORTHO05D000958 2.8e-08 63.5 224 22.3
BraA02t08035Z Brassica rapa HOM05D008086 ORTHO05D004972 8.0e-08 62.0 240 26.7
C02p48110 Brassica napus HOM05D008086 ORTHO05D004972 3.1e-07 60.1 223 22.9
C07p47770 Brassica napus HOM05D007337 ORTHO05D004972 4.0e-07 59.7 48 50.0
C02p47660 Brassica napus HOM05D008086 ORTHO05D004972 1.5e-06 57.8 93 37.6


User provided reference genes

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