Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G16545 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 6.2e-154 547.4 263 100.0
Carub.0007s2493 Capsella rubella HOM05D007337 ORTHO05D004972 1.1e-139 500.0 263 89.4
Thhalv10026831m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 6.9e-113 411.0 263 73.8
A03p49980 Brassica napus HOM05D007337 ORTHO05D004972 2.4e-105 386.0 264 70.8
BcaNung02865 Brassica carinata HOM05D007337 ORTHO05D004972 1.2e-104 383.6 263 70.3
AL1G32140 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.0e-103 380.6 275 69.1
Thhalv10000293m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 1.7e-103 379.8 263 70.7
BraA03t14091Z Brassica rapa HOM05D007337 ORTHO05D004972 3.2e-102 375.6 251 71.3
BcaC07g37998 Brassica carinata HOM05D007337 ORTHO05D004972 1.5e-99 366.7 267 67.8
Aa31LG2G12670 Aethionema arabicum HOM05D007337 ORTHO05D004972 3.3e-99 365.5 263 66.5
BcaC06g33493 Brassica carinata HOM05D007337 ORTHO05D004972 3.3e-99 365.5 263 66.9
AL7G38320 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.8e-97 359.8 280 63.9
BolC8t48380H Brassica oleracea HOM05D007337 ORTHO05D004972 9.1e-97 357.5 269 67.7
A08p12570 Brassica napus HOM05D007337 ORTHO05D004972 3.4e-96 355.5 269 67.7
BraA08t33248Z Brassica rapa HOM05D007337 ORTHO05D004972 3.4e-96 355.5 269 67.7
Carub.0007s2491 Capsella rubella HOM05D007337 ORTHO05D004972 1.0e-92 344.0 278 63.3
A01p20860 Brassica napus HOM05D007337 ORTHO05D004972 1.5e-91 340.1 262 64.1
BraA01t02004Z Brassica rapa HOM05D007337 ORTHO05D004972 2.6e-91 339.3 264 64.8
BolC1t02562H Brassica oleracea HOM05D007337 ORTHO05D004972 7.4e-91 337.8 264 64.4
AT2G03020 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.4e-89 333.6 262 63.0
BcaC09g50365 Brassica carinata HOM05D007337 ORTHO05D004972 1.2e-88 330.5 252 64.7
C01p26190 Brassica napus HOM05D007337 ORTHO05D004972 5.9e-88 328.2 294 58.5
BcaNung00177 Brassica carinata HOM05D007337 ORTHO05D004972 3.2e-86 322.4 253 64.0
THA.LOC104815492 Tarenaya hassleriana HOM05D007337 ORTHO05D004972 3.6e-85 318.9 262 62.2
Sp7g15140 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.0e-84 317.4 252 64.3
BcaC09g50366 Brassica carinata HOM05D007337 ORTHO05D004972 6.7e-84 314.7 252 63.9
BcaNung00176 Brassica carinata HOM05D007337 ORTHO05D004972 6.7e-84 314.7 252 63.9
Thhalv10026050m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 8.2e-82 307.8 252 60.3
CARHR223020 Cardamine hirsuta HOM05D007337 ORTHO05D004972 7.0e-81 304.7 283 57.2
Carub.0007s2489 Capsella rubella HOM05D007337 ORTHO05D004972 3.5e-80 302.4 274 58.0
AL7G38310 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 4.0e-76 288.9 278 56.5
Thhalv10026211m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 6.8e-76 288.1 231 60.2
Sp7g15130 Schrenkiella parvula HOM05D007337 ORTHO05D004972 4.4e-75 285.4 264 56.4
Sp7g15150 Schrenkiella parvula HOM05D007337 ORTHO05D004972 2.8e-74 282.7 251 59.4
BcaC03g13098 Brassica carinata HOM05D007337 ORTHO05D004972 2.4e-73 279.6 261 55.6
C03p31540 Brassica napus HOM05D007337 ORTHO05D004972 8.9e-68 261.2 262 53.4
AL7G38340 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.5e-67 260.4 262 54.6
BraA01t02003Z Brassica rapa HOM05D007337 ORTHO05D004972 2.0e-67 260.0 259 51.0
CARHR223030 Cardamine hirsuta HOM05D007337 ORTHO05D004972 5.7e-67 258.5 284 48.9
Sp7g15160 Schrenkiella parvula HOM05D007337 ORTHO05D004972 5.7e-67 258.5 283 48.1
BcaC09g50370 Brassica carinata HOM05D007337 ORTHO05D004972 2.2e-66 256.5 259 50.6
BolC1t02561H Brassica oleracea HOM05D007337 ORTHO05D004972 2.8e-66 256.1 259 50.6
BcaNung02864 Brassica carinata HOM05D007337 ORTHO05D004972 1.4e-65 253.8 272 49.6
Carub.0007s2487 Capsella rubella HOM05D007337 ORTHO05D004972 1.4e-65 253.8 277 49.1
AL7G38280 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 5.4e-65 251.9 275 48.7
A03p49990 Brassica napus HOM05D007337 ORTHO05D004972 2.7e-64 249.6 262 49.2
BcaC06g33497 Brassica carinata HOM05D007337 ORTHO05D004972 4.5e-64 248.8 262 53.4
A01p20850 Brassica napus HOM05D007337 ORTHO05D004972 4.5e-64 248.8 269 48.0
BcaC06g33495 Brassica carinata HOM05D007337 ORTHO05D004972 5.9e-64 248.4 262 52.3
BcaNung02862 Brassica carinata HOM05D007337 ORTHO05D004972 7.8e-64 248.1 261 52.1
C01p26180 Brassica napus HOM05D007337 ORTHO05D004972 1.3e-63 247.3 269 48.0
BcaC06g33494 Brassica carinata HOM05D007337 ORTHO05D004972 6.6e-63 245.0 273 47.3
AL7G38300 Arabidopsis lyrata HOM05D007337 ORTHO05D004972 1.9e-62 243.4 286 45.8
C07p48030 Brassica napus HOM05D007337 ORTHO05D004972 2.5e-62 243.0 252 54.0
BcaC09g50368 Brassica carinata HOM05D007337 ORTHO05D004972 5.6e-62 241.9 263 48.3
BcaNung00175 Brassica carinata HOM05D007337 ORTHO05D004972 5.6e-62 241.9 263 48.3
Sp7g15120 Schrenkiella parvula HOM05D007337 ORTHO05D004972 1.6e-61 240.4 255 49.4
BcaC01g04975 Brassica carinata HOM05D007337 ORTHO05D004972 2.8e-61 239.6 261 50.2
BolC3t15498H Brassica oleracea HOM05D007337 ORTHO05D004972 3.6e-61 239.2 245 52.2
A03p50000 Brassica napus HOM05D007337 ORTHO05D004972 1.0e-60 237.7 255 53.7
C02p33330 Brassica napus HOM05D007337 ORTHO05D004972 1.0e-60 237.7 257 48.6
Thhalv10026955m.g Eutrema salsugineum HOM05D007337 ORTHO05D004972 5.2e-60 235.3 285 44.9
A02p20510 Brassica napus HOM05D007337 ORTHO05D004972 6.8e-60 235.0 257 48.2
AT4G16550 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.2e-59 234.2 258 48.4
BolC2t09369H Brassica oleracea HOM05D007337 ORTHO05D004972 5.7e-59 231.9 278 46.8
Carub.0007s2488 Capsella rubella HOM05D007337 ORTHO05D004972 4.9e-58 228.8 256 47.7
BcaC03g15651 Brassica carinata HOM05D007337 ORTHO05D004972 8.3e-58 228.0 271 47.2
BolC2t05997H Brassica oleracea HOM05D007337 ORTHO05D004972 2.5e-54 216.5 192 57.8
BolC7t45327H Brassica oleracea HOM05D007337 ORTHO05D004972 4.3e-54 215.7 246 50.4
AT4G16560 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 4.7e-53 212.2 301 40.5
BolC7t45326H Brassica oleracea HOM05D007337 ORTHO05D004972 5.6e-46 188.7 148 60.8
C07p48020 Brassica napus HOM05D007337 ORTHO05D004972 1.6e-45 187.2 138 63.8
A03p49960 Brassica napus HOM05D007337 ORTHO05D004972 3.4e-43 179.5 254 43.3
BraA03t14088Z Brassica rapa HOM05D007337 ORTHO05D004972 5.8e-43 178.7 254 43.3
AT4G16555 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 1.7e-42 177.2 169 57.4
BolC7t45324H Brassica oleracea HOM05D007337 ORTHO05D004972 2.9e-42 176.4 259 44.0
BcaC06g33489 Brassica carinata HOM05D007337 ORTHO05D004972 1.1e-41 174.5 249 41.4
BcaC09g50367 Brassica carinata HOM05D007337 ORTHO05D004972 1.6e-40 170.6 196 48.5
AT4G16540 Arabidopsis thaliana HOM05D007337 ORTHO05D004972 2.7e-40 169.9 146 57.5
BcaC06g33490 Brassica carinata HOM05D007337 ORTHO05D004972 1.3e-39 167.5 226 44.7
C07p47780 Brassica napus HOM05D007337 ORTHO05D004972 2.3e-39 166.8 266 39.1
C07p48000 Brassica napus HOM05D007337 ORTHO05D004972 3.0e-39 166.4 273 41.8
BolC7t45302H Brassica oleracea HOM05D007337 ORTHO05D004972 1.1e-38 164.5 274 38.7
BraA03t14089Z Brassica rapa HOM05D007337 ORTHO05D004972 1.1e-38 164.5 254 42.5
Carub.0007s2492 Capsella rubella HOM05D007337 ORTHO05D004972 1.1e-38 164.5 101 78.2
A03p49970 Brassica napus HOM05D007337 ORTHO05D004972 1.9e-38 163.7 256 41.8
BcaC06g33478 Brassica carinata HOM05D007337 ORTHO05D004972 9.5e-38 161.4 260 38.8
BcaC06g31366 Brassica carinata HOM05D008086 ORTHO05D004972 4.0e-36 156.0 257 35.4
C07p31230 Brassica napus HOM05D008086 ORTHO05D004972 4.0e-36 156.0 264 36.0
BolC7t43664H Brassica oleracea HOM05D008086 ORTHO05D004972 5.2e-36 155.6 264 36.0
BraA06t27366Z Brassica rapa HOM05D008086 ORTHO05D004972 1.5e-35 154.1 263 35.0
C07p31290 Brassica napus HOM05D008086 ORTHO05D004972 2.0e-35 153.7 263 33.8
THA.LOC104798375 Tarenaya hassleriana HOM05D008086 ORTHO05D004972 3.4e-35 152.9 260 35.4
BcaC06g34237 Brassica carinata HOM05D008086 ORTHO05D004972 5.8e-35 152.1 270 34.1
BcaC06g31356 Brassica carinata HOM05D008086 ORTHO05D004972 3.8e-34 149.4 272 33.5
BcaC06g31364 Brassica carinata HOM05D008086 ORTHO05D004972 3.8e-34 149.4 264 33.7
C07p47990 Brassica napus HOM05D007337 ORTHO05D004972 2.4e-33 146.7 249 37.8
BcaC06g34235 Brassica carinata HOM05D008086 ORTHO05D004972 4.1e-33 146.0 264 33.3
A06p44950 Brassica napus HOM05D008086 ORTHO05D004972 1.2e-32 144.4 254 34.3
C07p31250 Brassica napus HOM05D008086 ORTHO05D004972 1.2e-32 144.4 232 34.1
AL8G10380 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 2.1e-32 143.7 256 36.3
CARHR215530 Cardamine hirsuta HOM05D007337 ORTHO05D004972 4.6e-32 142.5 89 76.4
CARHR223010 Cardamine hirsuta HOM05D007337 ORTHO05D004972 6.0e-32 142.1 86 76.7
BolC7t43666H Brassica oleracea HOM05D008086 ORTHO05D004972 1.0e-31 141.4 232 34.1
A06p44930 Brassica napus HOM05D008086 ORTHO05D004972 3.9e-31 139.4 233 33.0
BraA06t27364Z Brassica rapa HOM05D008086 ORTHO05D004972 3.9e-31 139.4 233 33.0
Thhalv10001213m.g Eutrema salsugineum HOM05D008086 ORTHO05D004972 5.1e-31 139.0 218 34.9
CARHR222970 Cardamine hirsuta HOM05D007337 ORTHO05D004972 6.6e-31 138.7 118 56.8
AL8G10360 Arabidopsis lyrata HOM05D008086 ORTHO05D004972 8.7e-31 138.3 257 35.0
Aa31LG9G5430 Aethionema arabicum HOM05D008086 ORTHO05D004972 1.9e-30 137.1 250 36.0
Carub.0008s0020 Capsella rubella HOM05D008086 ORTHO05D004972 2.5e-30 136.7 267 31.1
QL12p012450 Quercus lobata HOM05D007337 ORTHO05D004972 3.3e-30 136.3 254 35.0
CARHR173760 Cardamine hirsuta HOM05D008086 ORTHO05D004972 5.6e-30 135.6 266 32.0
CARHR173730 Cardamine hirsuta HOM05D008086 ORTHO05D004972 7.3e-30 135.2 222 34.7
Thecc.03G253000 Theobroma cacao HOM05D008086 ORTHO05D004972 7.3e-30 135.2 118 50.8
QL12p012461 Quercus lobata HOM05D008086 ORTHO05D004972 9.6e-30 134.8 256 35.5
BraA03t14092Z Brassica rapa HOM05D007337 ORTHO05D004972 1.6e-29 134.0 92 70.7
A02p30530 Brassica napus HOM05D008086 ORTHO05D004972 6.2e-29 132.1 243 32.5
BcaC04g19776 Brassica carinata HOM05D008086 ORTHO05D004972 9.0e-28 128.3 269 31.2
C09p51830 Brassica napus HOM05D008086 ORTHO05D004972 9.0e-28 128.3 269 31.2
BcaC03g17198 Brassica carinata HOM05D008086 ORTHO05D004972 1.2e-27 127.9 267 31.1
C02p51250 Brassica napus HOM05D008086 ORTHO05D004972 1.2e-27 127.9 267 31.1
BolC2t11215H Brassica oleracea HOM05D008086 ORTHO05D004972 1.2e-27 127.9 267 31.1
BcaC03g16869 Brassica carinata HOM05D008086 ORTHO05D004972 3.4e-27 126.3 229 33.2
BcaC06g31429 Brassica carinata HOM05D008086 ORTHO05D004972 3.4e-27 126.3 237 32.1
BolC9t58045H Brassica oleracea HOM05D008086 ORTHO05D004972 3.4e-27 126.3 238 31.5
BraA06t27411Z Brassica rapa HOM05D008086 ORTHO05D004972 5.8e-27 125.6 235 31.9
BcaC06g31340 Brassica carinata HOM05D008086 ORTHO05D004972 9.9e-27 124.8 239 31.4
BcaC06g34302 Brassica carinata HOM05D008086 ORTHO05D004972 9.9e-27 124.8 267 30.3
BolC1t05406H Brassica oleracea HOM05D008086 ORTHO05D004972 9.9e-27 124.8 269 32.0
A01p41900 Brassica napus HOM05D008086 ORTHO05D004972 1.7e-26 124.0 274 31.0
C07p30540 Brassica napus HOM05D008086 ORTHO05D004972 6.4e-26 122.1 207 34.3
C07p30570 Brassica napus HOM05D008086 ORTHO05D004972 8.4e-26 121.7 256 31.2
BcaC03g16909 Brassica carinata HOM05D008086 ORTHO05D004972 1.4e-25 120.9 223 33.2
A10p16630 Brassica napus HOM05D008086 ORTHO05D004972 2.4e-25 120.2 245 31.4
CARHR174690 Cardamine hirsuta HOM05D008086 ORTHO05D004972 2.4e-25 120.2 224 33.5
CARHR173740 Cardamine hirsuta HOM05D008086 ORTHO05D004972 7.1e-25 118.6 257 30.4
BolC2t10843H Brassica oleracea HOM05D008086 ORTHO05D004972 1.6e-24 117.5 222 32.4
BolC4t21835H Brassica oleracea HOM05D007337 ORTHO05D004972 1.6e-24 117.5 259 32.8
BolC4t21837H Brassica oleracea HOM05D007337 ORTHO05D004972 1.6e-24 117.5 259 32.8
BolC4t21838H Brassica oleracea HOM05D007337 ORTHO05D004972 1.6e-24 117.5 259 32.8
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 2.1e-24 117.1 239 31.8
BolC2t10802H Brassica oleracea HOM05D008086 ORTHO05D004972 2.1e-24 117.1 226 34.5
AT5G47590 Arabidopsis thaliana HOM05D008086 ORTHO05D004972 4.6e-24 115.9 112 48.2
BolC7t45322H Brassica oleracea HOM05D007337 ORTHO05D004972 1.3e-23 114.4 131 48.1
CARHR183270 Cardamine hirsuta HOM05D008086 ORTHO05D004972 1.7e-23 114.0 265 30.2
BraA02t08071Z Brassica rapa HOM05D008086 ORTHO05D004972 8.7e-23 111.7 252 31.7
BraA02t08074Z Brassica rapa HOM05D008086 ORTHO05D004972 4.3e-22 109.4 119 42.9
BcaNung00180 Brassica carinata HOM05D007337 ORTHO05D004972 2.8e-21 106.7 61 77.0
BcaNung02867 Brassica carinata HOM05D007337 ORTHO05D004972 4.8e-21 105.9 107 50.5
A02p30570 Brassica napus HOM05D008086 ORTHO05D004972 8.1e-21 105.1 119 42.0
BcaNung07056 Brassica carinata HOM05D008086 ORTHO05D004972 7.6e-19 98.6 217 29.5
BraA02t08035Z Brassica rapa HOM05D008086 ORTHO05D004972 6.4e-18 95.5 227 29.1
BcaC06g34304 Brassica carinata HOM05D008086 ORTHO05D004972 8.4e-18 95.1 205 30.2
A06p45430 Brassica napus HOM05D008086 ORTHO05D004972 8.4e-18 95.1 209 28.7
C02p48110 Brassica napus HOM05D008086 ORTHO05D004972 8.4e-18 95.1 207 30.0
C02p47660 Brassica napus HOM05D008086 ORTHO05D004972 1.4e-17 94.4 211 30.3
BcaB07g30809 Brassica carinata HOM05D008086 ORTHO05D004972 3.2e-17 93.2 241 30.3
BcaC03g16910 Brassica carinata HOM05D008086 ORTHO05D004972 2.5e-14 83.6 92 47.8
A02p30190 Brassica napus HOM05D008086 ORTHO05D004972 8.1e-13 78.6 117 35.0
BolC7t45323H Brassica oleracea HOM05D007337 ORTHO05D004972 2.2e-10 70.5 88 44.3
COL.COLO4_37190 Corchorus olitorius HOM05D007337 ORTHO05D010560 8.4e-10 68.6 99 39.4
Rhsim09G0039000 Rhododendron simsii HOM05D007337 ORTHO05D000958 8.4e-10 68.6 98 40.8
Actinidia02125 Actinidia chinensis HOM05D001099 ORTHO05D000958 4.2e-09 66.2 98 38.8
CAN.G1218.24 Capsicum annuum HOM05D001099 ORTHO05D000958 1.6e-08 64.3 86 37.2
BraA02t08072Z Brassica rapa HOM05D008086 ORTHO05D004972 7.9e-08 62.0 139 28.8
PGSC0003DMG400004807 Solanum tuberosum HOM05D001099 ORTHO05D010560 7.9e-08 62.0 100 34.0
QL12p012439 Quercus lobata HOM05D001099 ORTHO05D000958 2.3e-07 60.5 90 37.8
Nitab4.5_0000312g0140 Nicotiana tabacum HOM05D001099 ORTHO05D010560 3.0e-07 60.1 98 33.7
Solyc08g078710.3 Solanum lycopersicum HOM05D001099 ORTHO05D010560 3.9e-07 59.7 98 32.7
A02p30540 Brassica napus HOM05D008086 ORTHO05D004972 5.1e-07 59.3 141 28.4
Sopen08g027190 Solanum pennellii HOM05D001099 ORTHO05D010560 5.1e-07 59.3 98 32.7
C07p47770 Brassica napus HOM05D007337 ORTHO05D004972 1.9e-06 57.4 46 52.2
Dinv39136 Davidia involucrata HOM05D001099 ORTHO05D000958 2.5e-06 57.0 95 35.8
Peaxi162Scf00023g01123 Petunia axillaris HOM05D001099 ORTHO05D000958 9.6e-06 55.1 225 22.7


User provided reference genes

Program Settings