Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G16535 Arabidopsis thaliana HOM05D006466 ORTHO05D008084 1.8e-118 429.5 253 100.0
AL7G38350 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 1.3e-105 386.7 254 90.9
AL7G38400 Arabidopsis lyrata HOM05D006466 ORTHO05D008084 1.3e-105 386.7 254 90.9
Carub.0007s2494 Capsella rubella HOM05D006466 ORTHO05D008084 1.4e-102 376.7 253 88.1
CARHR222950 Cardamine hirsuta HOM05D006466 ORTHO05D008084 9.7e-96 354.0 256 84.4
Sp7g15110 Schrenkiella parvula HOM05D006466 ORTHO05D008084 5.0e-92 341.7 257 80.5
Thhalv10026056m.g Eutrema salsugineum HOM05D006466 ORTHO05D008084 3.6e-90 335.5 256 79.3
Aa31LG2G12660 Aethionema arabicum HOM05D006466 ORTHO05D008084 5.7e-88 328.2 253 79.8
BcaNung02868 Brassica carinata HOM05D006466 ORTHO05D008084 2.5e-83 312.8 255 75.7
BcaC06g33488 Brassica carinata HOM05D006466 ORTHO05D008084 8.2e-79 297.7 263 70.7
C07p47980 Brassica napus HOM05D006466 ORTHO05D008084 2.4e-78 296.2 261 70.5
BolC7t45321H Brassica oleracea HOM05D006466 ORTHO05D008084 2.4e-78 296.2 261 70.5
A03p49940 Brassica napus HOM05D006466 ORTHO05D008084 5.3e-78 295.0 263 70.0
BraA03t14087Z Brassica rapa HOM05D006466 ORTHO05D008084 5.3e-78 295.0 263 70.0
QL12p012545 Quercus lobata HOM05D006466 ORTHO05D008084 9.5e-51 204.5 251 49.4
Potri.001G123200 Populus trichocarpa HOM05D006466 ORTHO05D008084 8.0e-50 201.4 258 50.8
Ciclev10005762m.g Citrus clementina HOM05D006466 ORTHO05D008084 2.3e-49 199.9 250 48.0
Sabra01G0094900 Salix brachista HOM05D006466 ORTHO05D008084 3.0e-49 199.5 258 51.2
TWI81G0148 Tripterygium wilfordii HOM05D006466 ORTHO05D008084 6.8e-49 198.4 244 48.8
Eucgr.D02068 Eucalyptus grandis HOM05D006466 ORTHO05D008084 1.4e-46 190.7 246 50.4
Cpa.g.sc29.144 Carica papaya HOM05D006466 ORTHO05D008084 1.8e-46 190.3 252 53.2
Solyc08g078740.1 Solanum lycopersicum HOM05D006466 ORTHO05D008084 1.6e-45 187.2 269 44.6
Sopen08g027210 Solanum pennellii HOM05D006466 ORTHO05D008084 1.6e-45 187.2 269 44.6
PGSC0003DMG401004755 Solanum tuberosum HOM05D006466 ORTHO05D008084 5.9e-45 185.3 253 45.5
Cfa012739 Carpinus fangiana HOM05D006466 ORTHO05D008084 5.0e-44 182.2 257 47.1
FAN04G2180 Fragaria x ananassa HOM05D006466 ORTHO05D008084 5.0e-44 182.2 250 50.0
CiPaw.11G153200 Carya illinoinensis HOM05D006466 ORTHO05D008084 2.5e-43 179.9 257 48.6
Thecc.03G253200 Theobroma cacao HOM05D006466 ORTHO05D008084 3.3e-43 179.5 250 47.2
Haze_07889 Corylus avellana HOM05D006466 ORTHO05D008084 4.3e-43 179.1 257 47.1
MSTRG.12091 Avicennia marina HOM05D006466 ORTHO05D008084 1.2e-42 177.6 253 47.0
Hma1.2p1_2380F.1_g320960 Hydrangea macrophylla HOM05D006466 ORTHO05D008084 1.6e-42 177.2 263 47.5
Manes.01G079600 Manihot esculenta HOM05D006466 ORTHO05D008084 2.1e-42 176.8 247 47.8
Gohir.A12G217700 Gossypium hirsutum HOM05D006466 ORTHO05D008084 2.8e-42 176.4 243 45.7
ClCG01G004000 Citrullus lanatus HOM05D006466 ORTHO05D008084 3.6e-42 176.0 250 47.2
Gorai.008G235900 Gossypium raimondii HOM05D006466 ORTHO05D008084 6.1e-42 175.3 243 46.5
CsaV3_5G004180 Cucumis sativus L. HOM05D006466 ORTHO05D008084 8.0e-42 174.9 250 45.2
Ah.12g056750 Amaranthus hybridus HOM05D006466 ORTHO05D008084 1.0e-41 174.5 257 47.1
Lsat_1_v5_gn_3_521 Lactuca sativa HOM05D006466 ORTHO05D008084 1.0e-41 174.5 247 47.8
FAN18G0606 Fragaria x ananassa HOM05D006466 ORTHO05D008084 1.8e-41 173.7 257 48.6
Gohir.D12G220200 Gossypium hirsutum HOM05D006466 ORTHO05D008084 1.8e-41 173.7 243 46.1
Actinidia27463 Actinidia chinensis HOM05D006466 ORTHO05D008084 3.0e-41 172.9 259 44.8
FvH4_5g18710 Fragaria vesca HOM05D006466 ORTHO05D008084 4.0e-41 172.6 257 48.6
RcHm_v2.0_Chr7g0203001 Rosa chinensis HOM05D006466 ORTHO05D008084 6.8e-41 171.8 262 45.0
MELO3C005537.2 Cucumis melo HOM05D006466 ORTHO05D008084 8.9e-41 171.4 250 45.6
PGR031G1557 Punica granatum HOM05D006466 ORTHO05D008084 2.0e-40 170.2 262 42.7
GSVIVG01001313001 Vitis vinifera HOM05D006466 ORTHO05D008084 2.6e-40 169.9 259 44.0
Atru.chr2.1841 Acer truncatum HOM05D006466 ORTHO05D008084 4.4e-40 169.1 252 43.3
FAN13G1623 Fragaria x ananassa HOM05D006466 ORTHO05D008084 5.8e-40 168.7 258 47.3
Sed0012351 Sechium edule HOM05D006466 ORTHO05D008084 5.8e-40 168.7 245 45.7
TPR.G37616 Trifolium pratense HOM05D006466 ORTHO05D008084 7.5e-40 168.3 254 47.2
arahy.Tifrunner.gnm1.ann1.VT8LY8 Arachis hypogaea HOM05D006466 ORTHO05D008084 9.8e-40 167.9 252 48.0
DCAR_008489 Daucus carota HOM05D005079 ORTHO05D006362 1.3e-39 167.5 246 44.7
unitig_61.g26196 Utricularia gibba HOM05D006466 ORTHO05D008084 2.2e-39 166.8 261 47.5
arahy.Tifrunner.gnm1.ann1.HK6I2L Arachis hypogaea HOM05D006466 ORTHO05D008084 3.7e-39 166.0 258 47.3
Medtr4g101030 Medicago truncatula HOM05D006466 ORTHO05D008084 6.4e-39 165.2 250 45.6
Sed0026776 Sechium edule HOM05D006466 ORTHO05D008084 6.4e-39 165.2 255 46.3
arahy.Tifrunner.gnm1.ann1.LISY29 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.1e-38 164.5 257 47.9
Dinv39131 Davidia involucrata HOM05D006466 ORTHO05D008084 1.4e-38 164.1 261 45.2
Manes.15G178400 Manihot esculenta HOM05D006466 ORTHO05D008084 1.4e-38 164.1 237 45.6
Manes.15G178500 Manihot esculenta HOM05D006466 ORTHO05D008084 3.2e-38 162.9 237 44.7
Nitab4.5_0000312g0170 Nicotiana tabacum HOM05D006466 ORTHO05D008084 1.2e-37 161.0 255 42.7
Nitab4.5_0008481g0010 Nicotiana tabacum HOM05D006466 ORTHO05D008084 1.6e-37 160.6 251 41.4
Lj1A353T9 Lonicera japonica HOM05D006466 ORTHO05D008084 2.7e-37 159.8 250 42.4
Phvul.003G219800 Phaseolus vulgaris HOM05D006466 ORTHO05D008084 4.6e-37 159.1 257 49.4
Peaxi162Scf00002g00172 Petunia axillaris HOM05D006466 ORTHO05D008084 5.0e-36 155.6 269 39.4
VMungo0251G3296 Vigna mungo HOM05D006466 ORTHO05D008084 1.1e-35 154.5 255 50.2
Nn1g01036 Nelumbo nucifera HOM05D006466 ORTHO05D008084 1.5e-35 154.1 254 43.3
SGA_v2.0_scaffold120G32877 Striga asiatica HOM05D006466 ORTHO05D008084 1.9e-35 153.7 253 43.5
BcaC04g19403 Brassica carinata HOM05D006466 ORTHO05D008084 4.3e-35 152.5 143 70.6
BolC9t58475H Brassica oleracea HOM05D006466 ORTHO05D008084 4.3e-35 152.5 143 70.6
SHI10480 Sapria himalayana HOM05D006466 ORTHO05D008084 7.3e-35 151.8 248 44.0
CANSAT21G1921 Cannabis sativa HOM05D006466 ORTHO05D008084 9.5e-35 151.4 246 42.3
CDE02G4728 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 9.5e-35 151.4 250 40.8
ECA232G3467 Erigeron canadensis HOM05D006466 ORTHO05D008084 1.2e-34 151.0 252 42.1
Psat4g071640 Pisum sativum HOM05D006466 ORTHO05D008084 4.7e-34 149.1 204 44.6
SalBow6G4398 Salvia bowleyana HOM05D006466 ORTHO05D008084 1.1e-33 147.9 184 47.8
Migut.A00968 Erythranthe guttata HOM05D006466 ORTHO05D008084 1.8e-33 147.1 258 40.7
arahy.Tifrunner.gnm1.ann1.MY6G43 Arachis hypogaea HOM05D006466 ORTHO05D008084 3.1e-33 146.4 253 46.2
Lj4g0024258 Lotus japonicus HOM05D006466 ORTHO05D008084 6.8e-33 145.2 199 46.7
Lalb_Chr16g0389331 Lupinus albus HOM05D006466 ORTHO05D008084 8.9e-33 144.8 199 46.7
Prupe.5G071300 Prunus persica HOM05D006466 ORTHO05D008084 1.5e-32 144.1 198 51.5
PSO170G1975 Papaver somniferum HOM05D006466 ORTHO05D008084 3.4e-32 142.9 247 42.1
PSO528G0015 Papaver somniferum HOM05D006466 ORTHO05D008084 3.4e-32 142.9 251 43.0
Rhsim07G0108000 Rhododendron simsii HOM05D006466 ORTHO05D008084 3.4e-32 142.9 179 48.6
Aqoxy6G01886 Aquilegia oxysepala HOM05D006466 ORTHO05D008084 4.4e-32 142.5 248 41.5
FAN08G0853 Fragaria x ananassa HOM05D006466 ORTHO05D008084 5.8e-32 142.1 261 42.9
TAR375G0032 Trochodendron aralioides HOM05D006466 ORTHO05D008084 7.5e-32 141.7 249 40.2
ATR0193G040 Amborella trichopoda HOM05D006466 ORTHO05D008084 1.7e-31 140.6 203 42.4
HPP92_014482 Vanilla planifolia HOM05D006466 ORTHO05D008084 1.4e-30 137.5 272 38.6
Eucgr.D02058 Eucalyptus grandis HOM05D006466 ORTHO05D008084 2.4e-30 136.7 257 38.9
GSVIVG01030884001 Vitis vinifera HOM05D006466 ORTHO05D008084 2.4e-30 136.7 252 38.9
Os10g0507500 Oryza sativa ssp. japonica HOM05D006466 ORTHO05D008084 4.1e-30 136.0 250 46.4
Ca_21959_v3 Cicer arietinum L. HOM05D006466 ORTHO05D008084 1.2e-29 134.4 198 47.5
Nn6g33981 Nelumbo nucifera HOM05D006466 ORTHO05D008084 4.6e-29 132.5 188 47.9
MD04G1088600 Malus domestica HOM05D006466 ORTHO05D008084 6.0e-29 132.1 258 38.4
SEGI_30297 Sequoiadendron giganteum HOM05D006466 ORTHO05D008084 7.8e-29 131.7 241 44.4
AUR62007505 Chenopodium quinoa HOM05D006466 ORTHO05D008084 3.3e-27 126.3 241 39.4
Cc08_g12600 Coffea canephora HOM05D006466 ORTHO05D008084 5.6e-27 125.6 203 41.4
AagrBONN_evm.TU.Sc2ySwM_228.639 Anthoceros agrestis HOM05D007188 ORTHO05D009102 1.8e-25 120.6 261 38.7
Oeu019590.1 Olea europaea HOM05D006466 ORTHO05D008084 1.8e-25 120.6 254 35.8
Glyma.17G140900 Glycine max HOM05D006466 ORTHO05D008084 8.9e-25 118.2 255 43.1
AT2G03010 Arabidopsis thaliana HOM05D007773 ORTHO05D008084 4.4e-24 115.9 169 50.9
Lj8A452G56 Lonicera japonica HOM05D006466 ORTHO05D008084 1.3e-23 114.4 252 35.7
AUR62039958 Chenopodium quinoa HOM05D006466 ORTHO05D008084 3.2e-22 109.8 252 36.1
Mapoly0015s0012 Marchantia polymorpha HOM05D006466 ORTHO05D008084 4.1e-22 109.4 251 37.1
BraA04t17310Z Brassica rapa HOM05D006466 ORTHO05D008084 2.3e-20 103.6 94 67.0
C03p73400 Brassica napus HOM05D006466 ORTHO05D008084 6.6e-20 102.1 100 56.0
BcaC01g01648 Brassica carinata HOM05D006466 ORTHO05D008084 5.6e-19 99.0 92 57.6
CDE11G0010 Ceratophyllum demersum HOM05D006466 ORTHO05D008084 5.6e-19 99.0 216 37.0
C09p56080 Brassica napus HOM05D006466 ORTHO05D008084 1.1e-17 94.7 94 68.1
arahy.Tifrunner.gnm1.ann1.AC5BZW Arachis hypogaea HOM05D006466 ORTHO05D008084 8.9e-17 91.7 196 37.8
Pp3c3_19850 Physcomitrium patens HOM05D006466 ORTHO05D008084 8.9e-17 91.7 223 34.1
arahy.Tifrunner.gnm1.ann1.Y2DLV0 Arachis hypogaea HOM05D006466 ORTHO05D008084 1.5e-16 90.9 118 45.8
C03p59450 Brassica napus HOM05D006466 ORTHO05D008084 1.1e-14 84.7 61 67.2
HanXRQChr02g0051581 Helianthus annuus HOM05D006466 ORTHO05D008084 2.4e-14 83.6 100 55.0
Zm00001eb044010 Zea mays HOM05D006466 ORTHO05D008084 9.2e-14 81.6 62 64.5
A01p37510 Brassica napus HOM05D006466 ORTHO05D008084 1.6e-13 80.9 59 69.5
arahy.Tifrunner.gnm1.ann1.W2BU8F Arachis hypogaea HOM05D004339 ORTHO05D002389 8.7e-12 75.1 184 36.4
Oeu039628.1 Olea europaea HOM05D006466 ORTHO05D008084 1.9e-11 73.9 55 61.8
Actinidia05202 Actinidia chinensis HOM05D006466 ORTHO05D008084 8.1e-10 68.6 96 49.0
Eucgr.L01522 Eucalyptus grandis HOM05D006466 ORTHO05D008084 4.0e-09 66.2 35 80.0
Cre06.g300200 Chlamydomonas reinhardtii HOM05D006466 ORTHO05D008084 1.5e-08 64.3 199 36.2
Sc22g0000810 Simmondsia chinensis HOM05D006466 ORTHO05D008084 7.6e-08 62.0 99 42.4
CBR_g29445 Chara braunii HOM05D006466 ORTHO05D008084 9.3e-06 55.1 95 48.4


User provided reference genes

Program Settings