Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G16440 Arabidopsis thaliana HOM05D004987 ORTHO05D005960 2.0e-275 951.8 475 100.0
AL7G38570 Arabidopsis lyrata HOM05D004987 ORTHO05D005960 1.5e-267 925.6 475 96.6
Carub.0007s2509 Capsella rubella HOM05D004987 ORTHO05D005960 5.2e-252 874.0 475 91.6
CARHR222790 Cardamine hirsuta HOM05D004987 ORTHO05D005960 7.5e-251 870.2 476 90.3
Sp7g14970 Schrenkiella parvula HOM05D004987 ORTHO05D005960 4.3e-246 854.4 476 89.3
A01p21160 Brassica napus HOM05D004987 ORTHO05D005960 5.2e-244 847.4 476 88.4
BcaNung00197 Brassica carinata HOM05D004987 ORTHO05D005960 2.0e-243 845.5 476 87.8
Thhalv10025117m.g Eutrema salsugineum HOM05D004987 ORTHO05D005960 4.4e-243 844.3 476 88.2
C01p26430 Brassica napus HOM05D004987 ORTHO05D005960 9.8e-243 843.2 476 87.6
BcaC09g50343 Brassica carinata HOM05D004987 ORTHO05D005960 2.4e-241 838.6 476 87.2
BolC1t02590H Brassica oleracea HOM05D004987 ORTHO05D005960 2.4e-241 838.6 476 87.2
Aa31LG2G12480 Aethionema arabicum HOM05D004987 ORTHO05D005960 3.2e-241 838.2 475 87.2
BraA01t02026Z Brassica rapa HOM05D004987 ORTHO05D005960 2.7e-240 835.1 500 84.4
Ciclev10015100m.g Citrus clementina HOM05D004987 ORTHO05D005960 3.5e-208 728.4 479 73.7
Thecc.06G237200 Theobroma cacao HOM05D004987 ORTHO05D005960 1.1e-206 723.4 480 73.1
Duzib235G0100 Durio zibethinus HOM05D004987 ORTHO05D005960 4.8e-205 718.0 480 72.7
Gohir.A06G204500 Gossypium hirsutum HOM05D004987 ORTHO05D005960 2.4e-204 715.7 480 72.7
Manes.09G081692 Manihot esculenta HOM05D004987 ORTHO05D005960 2.4e-204 715.7 478 72.8
Atru.chr3.1439 Acer truncatum HOM05D004987 ORTHO05D005960 5.8e-203 711.1 479 73.1
Gorai.010G249200 Gossypium raimondii HOM05D004987 ORTHO05D005960 1.0e-202 710.3 480 72.1
CiPaw.09G105700 Carya illinoinensis HOM05D004987 ORTHO05D005960 1.7e-202 709.5 480 72.1
CiPaw.10G079900 Carya illinoinensis HOM05D004987 ORTHO05D005960 2.9e-202 708.8 480 72.3
Gohir.D06G217000 Gossypium hirsutum HOM05D004987 ORTHO05D005960 3.8e-202 708.4 480 72.1
CsaV3_1G015810 Cucumis sativus L. HOM05D004987 ORTHO05D005960 1.6e-200 703.0 480 70.4
Potri.006G017000 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.6e-200 703.0 480 71.5
QL05p068327 Quercus lobata HOM05D004987 ORTHO05D005960 2.1e-200 702.6 479 71.2
QL05p068818 Quercus lobata HOM05D004987 ORTHO05D005960 2.1e-200 702.6 479 71.2
ClCG01G010690 Citrullus lanatus HOM05D004987 ORTHO05D005960 6.0e-200 701.0 480 69.8
TAR626G0553 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.0e-199 700.3 484 71.1
GSVIVG01007214001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.0e-199 700.3 480 70.4
CANSAT01G2438 Cannabis sativa HOM05D004987 ORTHO05D005960 1.8e-199 699.5 482 70.1
AUR62018393 Chenopodium quinoa HOM05D004987 ORTHO05D005960 5.1e-199 698.0 482 70.3
ECA248G1395 Erigeron canadensis HOM05D004987 ORTHO05D005960 8.7e-199 697.2 482 71.0
Sed0000076 Sechium edule HOM05D004987 ORTHO05D005960 1.1e-198 696.8 479 69.9
Hma1.2p1_0657F.1_g196910 Hydrangea macrophylla HOM05D004987 ORTHO05D005960 1.5e-198 696.4 479 70.8
Lsat_1_v5_gn_6_62021 Lactuca sativa HOM05D004987 ORTHO05D005960 4.3e-198 694.9 479 71.6
TWI38G0401 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 4.3e-198 694.9 475 70.7
Haze_06979 Corylus avellana HOM05D004987 ORTHO05D005960 1.3e-197 693.3 507 68.0
Dinv01708 Davidia involucrata HOM05D004987 ORTHO05D005960 2.1e-197 692.6 491 69.5
Nn1g07472 Nelumbo nucifera HOM05D004987 ORTHO05D005960 2.1e-197 692.6 482 70.7
DCAR_014269 Daucus carota HOM05D004987 ORTHO05D005960 8.2e-197 690.6 481 71.5
EL10Ac3g07283 Beta vulgaris HOM05D004987 ORTHO05D005960 3.4e-195 685.3 482 69.1
HanXRQChr01g0004771 Helianthus annuus HOM05D004987 ORTHO05D005960 5.9e-195 684.5 478 69.5
PGR004G2886 Punica granatum HOM05D004987 ORTHO05D005960 7.6e-195 684.1 481 68.4
Lalb_Chr20g0119411 Lupinus albus HOM05D004987 ORTHO05D005960 1.0e-194 683.7 481 69.9
TAR627G0360 Trochodendron aralioides HOM05D004987 ORTHO05D005960 1.0e-194 683.7 486 70.2
Actinidia26840 Actinidia chinensis HOM05D004987 ORTHO05D005960 2.9e-194 682.2 484 69.6
Prupe.4G007100 Prunus persica HOM05D004987 ORTHO05D005960 8.5e-194 680.6 480 69.2
arahy.Tifrunner.gnm1.ann1.158NIU Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-193 680.2 484 69.6
CSS0011246 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 1.4e-193 679.9 480 69.4
CSS0019037 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 3.2e-193 678.7 480 69.2
arahy.Tifrunner.gnm1.ann1.K2RD5P Arachis hypogaea HOM05D004987 ORTHO05D005960 4.2e-193 678.3 484 69.2
CSS0028023 Camellia sinensis var. sinensis HOM05D004987 ORTHO05D005960 4.2e-193 678.3 481 69.0
RcHm_v2.0_Chr5g0000801 Rosa chinensis HOM05D004987 ORTHO05D005960 4.2e-193 678.3 479 69.7
MD00G1058500 Malus domestica HOM05D004987 ORTHO05D005960 7.2e-193 677.6 480 69.4
FvH4_3g00590 Fragaria vesca HOM05D004987 ORTHO05D005960 1.2e-192 676.8 479 69.7
Glyma.07G266900 Glycine max HOM05D004987 ORTHO05D005960 1.2e-192 676.8 481 68.8
arahy.Tifrunner.gnm1.ann1.URKQ8K Arachis hypogaea HOM05D004987 ORTHO05D005960 3.6e-192 675.2 496 67.9
Ah.02g126930 Amaranthus hybridus HOM05D004987 ORTHO05D005960 4.6e-192 674.9 476 68.5
MBI19_g25589_MAGBIO Magnolia biondii HOM05D004987 ORTHO05D005960 4.6e-192 674.9 483 68.5
Peaxi162Scf00488g00925 Petunia axillaris HOM05D004987 ORTHO05D005960 4.6e-192 674.9 481 69.4
Migut.M01428 Erythranthe guttata HOM05D004987 ORTHO05D005960 6.1e-192 674.5 476 70.2
FAN25G3815 Fragaria x ananassa HOM05D004987 ORTHO05D005960 1.0e-191 673.7 479 69.1
Lj4g0022097 Lotus japonicus HOM05D004987 ORTHO05D005960 3.9e-191 671.8 480 68.8
Phvul.003G085301 Phaseolus vulgaris HOM05D004987 ORTHO05D005960 3.9e-191 671.8 481 68.4
MSTRG.13111 Avicennia marina HOM05D004987 ORTHO05D005960 5.1e-191 671.4 475 70.1
Glyma.17G007300 Glycine max HOM05D004987 ORTHO05D005960 8.7e-191 670.6 481 68.2
VMungo1215G0994 Vigna mungo HOM05D004987 ORTHO05D005960 8.7e-191 670.6 480 68.3
Ca_15341_v3 Cicer arietinum L. HOM05D004987 ORTHO05D005960 3.3e-190 668.7 480 68.5
SalBow8G4301 Salvia bowleyana HOM05D004987 ORTHO05D005960 5.7e-190 667.9 475 68.2
Medtr3g117360 Medicago truncatula HOM05D004987 ORTHO05D005960 9.7e-190 667.2 482 67.8
Nitab4.5_0000318g0050 Nicotiana tabacum HOM05D004987 ORTHO05D005960 9.7e-190 667.2 477 68.3
Cc09_g00600 Coffea canephora HOM05D004987 ORTHO05D005960 1.1e-188 663.7 489 67.3
arahy.Tifrunner.gnm1.ann1.016YCC Arachis hypogaea HOM05D004987 ORTHO05D005960 3.1e-188 662.1 516 65.3
Lj2C259G8 Lonicera japonica HOM05D004987 ORTHO05D005960 5.3e-188 661.4 475 68.8
PGSC0003DMG400025463 Solanum tuberosum HOM05D004987 ORTHO05D005960 5.3e-188 661.4 478 67.6
Psat5g004720 Pisum sativum HOM05D004987 ORTHO05D005960 1.2e-187 660.2 480 67.7
Solyc08g065990.3 Solanum lycopersicum HOM05D004987 ORTHO05D005960 4.5e-187 658.3 477 66.9
Sopen08g019660 Solanum pennellii HOM05D004987 ORTHO05D005960 5.9e-187 657.9 477 67.1
SGA_v2.0_scaffold54G19512 Striga asiatica HOM05D004987 ORTHO05D005960 5.9e-187 657.9 475 67.8
Aqoxy5G03428 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 7.7e-187 657.5 508 64.2
SGA_v2.0_scaffold111G31506 Striga asiatica HOM05D004987 ORTHO05D005960 1.0e-186 657.1 495 65.9
MSTRG.14600 Avicennia marina HOM05D004987 ORTHO05D005960 1.3e-186 656.8 476 68.3
Oeu030104.1 Olea europaea HOM05D004987 ORTHO05D005960 2.9e-186 655.6 476 68.3
Sc13g0000910 Simmondsia chinensis HOM05D004987 ORTHO05D005960 3.8e-186 655.2 428 74.1
CDE07G0546 Ceratophyllum demersum HOM05D004987 ORTHO05D005960 1.1e-185 653.7 476 68.1
vmacro03626 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 1.9e-185 652.9 487 66.7
CAN.G9.5 Capsicum annuum HOM05D004987 ORTHO05D005960 2.5e-185 652.5 477 66.5
unitig_749.g13618 Utricularia gibba HOM05D004987 ORTHO05D005960 2.5e-185 652.5 475 68.0
Sabra16G0013000 Salix brachista HOM05D004987 ORTHO05D005960 1.8e-183 646.4 567 59.3
Oeu057036.1 Olea europaea HOM05D004987 ORTHO05D005960 2.0e-182 642.9 477 68.6
ATR0594G143 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.7e-181 639.8 487 65.3
Rhsim13G0142900 Rhododendron simsii HOM05D004987 ORTHO05D005960 2.4e-180 636.0 472 67.2
Zm00001eb214910 Zea mays HOM05D004987 ORTHO05D005960 3.1e-180 635.6 480 65.4
Lsat_1_v5_gn_0_32381 Lactuca sativa HOM05D004987 ORTHO05D005960 1.2e-179 633.6 462 69.5
SHI24440 Sapria himalayana HOM05D004987 ORTHO05D005960 1.2e-179 633.6 494 63.8
Medtr4g062080 Medicago truncatula HOM05D004987 ORTHO05D005960 2.0e-179 632.9 482 64.5
PSO017G3064 Papaver somniferum HOM05D004987 ORTHO05D005960 2.6e-179 632.5 491 65.6
Zm00001eb057200 Zea mays HOM05D004987 ORTHO05D005960 4.5e-179 631.7 477 64.6
Os03g0748700 Oryza sativa ssp. japonica HOM05D004987 ORTHO05D005960 7.7e-179 630.9 479 64.7
PSO675G1563 Papaver somniferum HOM05D004987 ORTHO05D005960 7.7e-179 630.9 488 65.6
Eucgr.D01441 Eucalyptus grandis HOM05D004987 ORTHO05D005960 7.2e-177 624.4 427 71.7
Nitab4.5_0002021g0020 Nicotiana tabacum HOM05D004987 ORTHO05D005960 1.2e-176 623.6 478 65.7
MELO3C025535.2 Cucumis melo HOM05D004987 ORTHO05D005960 1.0e-175 620.5 416 70.0
Sabra06G0012100 Salix brachista HOM05D004987 ORTHO05D005960 3.7e-173 612.1 512 62.7
AUR62030265 Chenopodium quinoa HOM05D004987 ORTHO05D005960 2.5e-169 599.4 416 70.2
TPR.G32192 Trifolium pratense HOM05D004987 ORTHO05D005960 8.0e-168 594.3 428 67.8
Lsat_1_v5_gn_6_62041 Lactuca sativa HOM05D004987 ORTHO05D005960 2.3e-167 592.8 478 62.8
AagrBONN_evm.TU.Sc2ySwM_368.1142 Anthoceros agrestis HOM05D004987 ORTHO05D005960 4.1e-164 582.0 489 60.1
SMO356G0034 Selaginella moellendorffii HOM05D004987 ORTHO05D005960 6.5e-162 574.7 476 61.6
Lj2g0000431 Lotus japonicus HOM05D004987 ORTHO05D005960 1.4e-159 567.0 482 61.4
Mapoly0020s0065 Marchantia polymorpha HOM05D004987 ORTHO05D005960 4.4e-158 562.0 487 58.1
Cc10_g02370 Coffea canephora HOM05D004987 ORTHO05D005960 7.0e-156 554.7 557 54.8
Pp3c6_16630 Physcomitrium patens HOM05D004987 ORTHO05D005960 2.9e-154 549.3 475 56.6
MD10G1336400 Malus domestica HOM05D004987 ORTHO05D005960 4.7e-152 542.0 412 66.3
Potri.016G008700 Populus trichocarpa HOM05D004987 ORTHO05D005960 1.3e-146 523.9 355 73.8
vmacro23178 Vaccinium macrocarpon HOM05D004987 ORTHO05D005960 3.7e-141 505.8 414 62.1
CsaV3_UNG059470 Cucumis sativus L. HOM05D004987 ORTHO05D005960 4.0e-135 485.7 494 53.4
Cpa.g.sc27.253 Carica papaya HOM05D004987 ORTHO05D005960 8.3e-133 478.0 479 52.2
Cre03.g200550 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 2.5e-97 360.1 597 38.9
SEGI_15851 Sequoiadendron giganteum HOM05D004987 ORTHO05D005960 5.6e-97 359.0 253 64.8
MCO07G565 Micromonas commoda HOM05D004987 ORTHO05D005960 1.8e-95 354.0 518 42.5
HPP92_013953 Vanilla planifolia HOM05D004987 ORTHO05D005960 3.0e-90 336.7 256 65.6
Lsat_1_v5_gn_6_62060 Lactuca sativa HOM05D004987 ORTHO05D005960 1.2e-83 314.7 211 76.3
PRCOL_00000051 Prasinoderma coloniale HOM05D004987 ORTHO05D005960 1.4e-79 301.2 541 37.5
Ciclev10027102m.g Citrus clementina HOM05D004987 ORTHO05D005960 1.6e-75 287.7 183 70.5
AagrBONN_evm.TU.Sc2ySwM_368.3306 Anthoceros agrestis HOM05D004987 ORTHO05D005960 3.0e-74 283.5 222 61.3
Atru.chr1.2336 Acer truncatum HOM05D004987 ORTHO05D005960 3.2e-68 263.5 286 54.9
ATR0751G100 Amborella trichopoda HOM05D004987 ORTHO05D005960 1.6e-67 261.2 249 52.2
FAN21G3552 Fragaria x ananassa HOM05D004987 ORTHO05D005960 4.8e-64 249.6 183 72.7
Ciclev10004004m.g Citrus clementina HOM05D004987 ORTHO05D005960 2.7e-59 233.8 176 62.5
TWI38G1931 Tripterygium wilfordii HOM05D004987 ORTHO05D005960 4.4e-57 226.5 253 47.4
Cfa026410 Carpinus fangiana HOM05D004987 ORTHO05D005960 1.4e-55 221.5 486 34.6
arahy.Tifrunner.gnm1.ann1.24PAJQ Arachis hypogaea HOM05D004987 ORTHO05D005960 1.3e-45 188.3 438 32.9
Aqoxy4G02991 Aquilegia oxysepala HOM05D000252 ORTHO05D000307 2.7e-43 180.6 172 53.5
CBR_g26339 Chara braunii HOM05D004987 ORTHO05D005960 8.0e-43 179.1 377 34.0
Cre03.g199800 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 1.8e-39 167.9 453 28.5
Cre09.g396600 Chlamydomonas reinhardtii HOM05D004987 ORTHO05D005960 3.1e-39 167.2 449 28.3
arahy.Tifrunner.gnm1.ann1.4D4U0P Arachis hypogaea HOM05D004987 ORTHO05D005960 2.0e-33 147.9 212 43.4
Aqoxy6G02697 Aquilegia oxysepala HOM05D004987 ORTHO05D005960 3.0e-26 124.0 216 36.6
arahy.Tifrunner.gnm1.ann1.GKV1XW Arachis hypogaea HOM05D004987 ORTHO05D005960 1.1e-20 105.5 182 40.1
AagrBONN_evm.TU.Sc2ySwM_368.1145 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.4e-15 88.6 133 42.9
MELO3C000413.2 Cucumis melo HOM05D004987 ORTHO05D005960 6.0e-14 83.2 65 66.2
TPR.G35318 Trifolium pratense HOM05D004987 ORTHO05D005960 1.0e-13 82.4 65 66.2
GSVIVG01005416001 Vitis vinifera HOM05D004987 ORTHO05D005960 1.0e-13 82.4 65 66.2
PSO339G0319 Papaver somniferum HOM05D004987 ORTHO05D005960 2.3e-10 71.2 69 55.1
AagrBONN_evm.TU.Sc2ySwM_368.1144 Anthoceros agrestis HOM05D004987 ORTHO05D005960 1.2e-09 68.9 83 50.6
PSO832G0476 Papaver somniferum HOM05D000145 ORTHO05D001435 2.0e-09 68.2 68 57.4
arahy.Tifrunner.gnm1.ann1.YI5A3W Arachis hypogaea HOM05D004987 ORTHO05D005960 2.6e-09 67.8 64 53.1
arahy.Tifrunner.gnm1.ann1.028TPL Arachis hypogaea HOM05D004987 ORTHO05D005960 3.2e-07 60.8 70 47.1
arahy.Tifrunner.gnm1.ann1.N1GFR4 Arachis hypogaea HOM05D004987 ORTHO05D005960 4.6e-06 57.0 59 47.5


User provided reference genes

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