Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G16060 Arabidopsis thaliana HOM05D005296 ORTHO05D006452 3.7e-160 568.2 290 100.0
AL7G39130 Arabidopsis lyrata HOM05D005296 ORTHO05D006452 4.0e-146 521.5 296 90.2
Carub.0007s2556 Capsella rubella HOM05D005296 ORTHO05D006452 6.2e-139 497.7 299 88.0
Thhalv10025823m.g Eutrema salsugineum HOM05D005296 ORTHO05D006452 1.4e-135 486.5 302 83.8
CARHR290680 Cardamine hirsuta HOM05D005296 ORTHO05D006452 1.0e-133 480.3 294 85.7
Sp7g14530 Schrenkiella parvula HOM05D005296 ORTHO05D006452 1.3e-133 479.9 295 83.4
A03p49510 Brassica napus HOM05D005296 ORTHO05D006452 6.6e-133 477.6 300 83.0
BolC7t45282H Brassica oleracea HOM05D005296 ORTHO05D006452 1.3e-131 473.4 299 81.9
BcaC06g33432 Brassica carinata HOM05D005296 ORTHO05D006452 6.2e-131 471.1 298 81.5
BcaC06g32977 Brassica carinata HOM05D005296 ORTHO05D006452 3.1e-130 468.8 298 82.9
C07p47580 Brassica napus HOM05D005296 ORTHO05D006452 5.8e-129 464.5 294 81.3
BraA03t14050Z Brassica rapa HOM05D005296 ORTHO05D006452 9.3e-127 457.2 305 79.7
BcaC06g33433 Brassica carinata HOM05D005296 ORTHO05D006452 1.6e-126 456.4 299 78.9
C07p47550 Brassica napus HOM05D005296 ORTHO05D006452 1.3e-125 453.4 315 75.9
Aa31LG10G6140 Aethionema arabicum HOM05D005296 ORTHO05D006452 3.6e-123 445.3 296 78.7
THA.LOC104821787 Tarenaya hassleriana HOM05D005296 ORTHO05D006452 6.9e-114 414.5 304 72.0
Atru.chr4.2920 Acer truncatum HOM05D005296 ORTHO05D006452 9.3e-111 404.1 302 69.2
Gohir.A01G033200 Gossypium hirsutum HOM05D005296 ORTHO05D006452 2.1e-110 402.9 236 81.8
Gohir.D01G023502 Gossypium hirsutum HOM05D005296 ORTHO05D006452 3.5e-110 402.1 236 81.8
Gorai.002G028900 Gossypium raimondii HOM05D005296 ORTHO05D006452 3.5e-110 402.1 236 81.8
Haze_01146 Corylus avellana HOM05D005296 ORTHO05D006452 3.0e-109 399.1 288 72.6
Cpa.g.sc9.118 Carica papaya HOM05D005296 ORTHO05D006452 2.1e-107 392.9 302 69.5
QL06p010871 Quercus lobata HOM05D005296 ORTHO05D006452 2.8e-107 392.5 266 73.3
Sc13g0006220 Simmondsia chinensis HOM05D005296 ORTHO05D006452 6.3e-107 391.3 233 79.4
Thecc.04G290700 Theobroma cacao HOM05D005296 ORTHO05D006452 8.2e-107 391.0 240 78.8
Manes.15G009300 Manihot esculenta HOM05D005296 ORTHO05D006452 1.1e-106 390.6 303 68.3
Prupe.1G129900 Prunus persica HOM05D005296 ORTHO05D006452 1.4e-106 390.2 260 75.4
vmacro08101 Vaccinium macrocarpon HOM05D005296 ORTHO05D006452 3.1e-106 389.0 281 69.4
Potri.010G006000 Populus trichocarpa HOM05D005296 ORTHO05D006452 4.1e-106 388.7 267 73.4
Glyma.15G152600 Glycine max HOM05D005296 ORTHO05D006452 5.3e-106 388.3 285 69.1
Eucgr.A01317 Eucalyptus grandis HOM05D005296 ORTHO05D006452 1.2e-105 387.1 237 78.5
Hma1.2p1_1352F.1_g277550 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 2.0e-105 386.3 236 76.7
FAN07G1138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 3.4e-105 385.6 258 74.0
FvH4_4g18820 Fragaria vesca HOM05D005296 ORTHO05D006452 4.5e-105 385.2 240 77.1
PGR031G1375 Punica granatum HOM05D005296 ORTHO05D006452 5.9e-105 384.8 276 71.4
Aqoxy5G00802 Aquilegia oxysepala HOM05D005296 ORTHO05D006452 7.6e-105 384.4 233 80.3
TWI09G1158 Tripterygium wilfordii HOM05D005296 ORTHO05D006452 7.6e-105 384.4 278 71.2
FAN17G2193 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.2e-104 382.9 258 73.6
GSVIVG01035092001 Vitis vinifera HOM05D005296 ORTHO05D006452 2.2e-104 382.9 240 77.9
TAR633G2374 Trochodendron aralioides HOM05D005296 ORTHO05D006452 2.9e-104 382.5 237 78.9
CiPaw.01G144600 Carya illinoinensis HOM05D005296 ORTHO05D006452 3.8e-104 382.1 243 76.5
RcHm_v2.0_Chr4g0423631 Rosa chinensis HOM05D005296 ORTHO05D006452 3.8e-104 382.1 291 70.4
Lalb_Chr15g0089391 Lupinus albus HOM05D005296 ORTHO05D006452 5.0e-104 381.7 272 72.1
Phvul.009G251800 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 5.0e-104 381.7 292 68.5
MD16G1162300 Malus domestica HOM05D005296 ORTHO05D006452 6.5e-104 381.3 258 73.3
CAN.G484.51 Capsicum annuum HOM05D005296 ORTHO05D006452 8.5e-104 380.9 284 67.6
MELO3C021302.2 Cucumis melo HOM05D005296 ORTHO05D006452 8.5e-104 380.9 242 74.4
Psat1g156080 Pisum sativum HOM05D005296 ORTHO05D006452 1.4e-103 380.2 268 73.9
arahy.Tifrunner.gnm1.ann1.GJ345V Arachis hypogaea HOM05D005296 ORTHO05D006452 4.2e-103 378.6 288 68.4
Ciclev10005508m.g Citrus clementina HOM05D005296 ORTHO05D006452 4.2e-103 378.6 286 69.6
CsaV3_6G022690 Cucumis sativus L. HOM05D005296 ORTHO05D006452 4.2e-103 378.6 233 76.4
Ca_01907_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 5.5e-103 378.3 233 79.0
HanXRQChr03g0083871 Helianthus annuus HOM05D005296 ORTHO05D006452 7.2e-103 377.9 242 75.6
Solyc12g099400.2 Solanum lycopersicum HOM05D005296 ORTHO05D006452 1.2e-102 377.1 303 66.0
TPR.G24643 Trifolium pratense HOM05D005296 ORTHO05D006452 1.2e-102 377.1 233 79.4
Sabra10G0005100 Salix brachista HOM05D005296 ORTHO05D006452 1.6e-102 376.7 279 68.8
Cfa015446 Carpinus fangiana HOM05D005296 ORTHO05D006452 3.6e-102 375.6 234 79.1
Medtr2g435540 Medicago truncatula HOM05D005296 ORTHO05D006452 3.6e-102 375.6 233 79.0
GSVIVG01035093001 Vitis vinifera HOM05D005296 ORTHO05D006452 4.6e-102 375.2 238 74.8
Lj6g0024924 Lotus japonicus HOM05D005296 ORTHO05D006452 1.0e-101 374.0 286 68.5
Sopen12g034070 Solanum pennellii HOM05D005296 ORTHO05D006452 1.3e-101 373.6 303 65.7
Cc03_g01400 Coffea canephora HOM05D005296 ORTHO05D006452 2.3e-101 372.9 234 76.5
PSO832G0676 Papaver somniferum HOM05D005296 ORTHO05D006452 3.0e-101 372.5 239 77.0
MBI19_g08248_MAGBIO Magnolia biondii HOM05D005296 ORTHO05D006452 8.7e-101 370.9 234 75.2
AUR62016165 Chenopodium quinoa HOM05D005296 ORTHO05D006452 1.1e-100 370.5 233 75.1
PGSC0003DMG400004702 Solanum tuberosum HOM05D005296 ORTHO05D006452 1.1e-100 370.5 304 64.1
ECA240G3796 Erigeron canadensis HOM05D002249 ORTHO05D000452 1.5e-100 370.2 229 77.7
VMungo1309G1137 Vigna mungo HOM05D005296 ORTHO05D006452 3.3e-100 369.0 315 63.8
AUR62035079 Chenopodium quinoa HOM05D005296 ORTHO05D006452 7.4e-100 367.9 289 64.7
Oeu033815.1 Olea europaea HOM05D005296 ORTHO05D006452 9.7e-100 367.5 232 76.7
Sed0027436 Sechium edule HOM05D005296 ORTHO05D006452 9.7e-100 367.5 242 72.3
SGA_v2.0_scaffold119G32698 Striga asiatica HOM05D005296 ORTHO05D006452 2.2e-99 366.3 233 75.5
CsaV3_6G022680 Cucumis sativus L. HOM05D005296 ORTHO05D006452 3.7e-99 365.5 233 74.7
Nitab4.5_0003484g0020 Nicotiana tabacum HOM05D005296 ORTHO05D006452 3.7e-99 365.5 305 63.3
Os05g0358400 Oryza sativa ssp. japonica HOM05D005296 ORTHO05D006452 3.7e-99 365.5 235 74.5
Lj3A826T78 Lonicera japonica HOM05D005296 ORTHO05D006452 6.3e-99 364.8 313 62.9
Oeu028323.1 Olea europaea HOM05D005296 ORTHO05D006452 1.8e-98 363.2 233 75.5
SGA_v2.0_scaffold91G28037 Striga asiatica HOM05D005296 ORTHO05D006452 3.1e-98 362.5 233 76.0
unitig_22.g6340 Utricularia gibba HOM05D005296 ORTHO05D006452 2.0e-97 359.8 233 75.1
Zm00001eb346400 Zea mays HOM05D005296 ORTHO05D006452 5.9e-97 358.2 233 73.4
MSTRG.24808 Avicennia marina HOM05D005296 ORTHO05D006452 8.5e-96 354.4 296 64.2
Dinv29712 Davidia involucrata HOM05D005296 ORTHO05D000287 1.1e-95 354.0 253 68.8
Nitab4.5_0000570g0290 Nicotiana tabacum HOM05D005296 ORTHO05D006452 1.1e-95 354.0 240 72.1
Nn3g21572 Nelumbo nucifera HOM05D005296 ORTHO05D006452 1.2e-94 350.5 277 66.4
Peaxi162Scf03294g00016 Petunia axillaris HOM05D005296 ORTHO05D006452 3.6e-94 349.0 281 65.8
arahy.Tifrunner.gnm1.ann1.28UQCP Arachis hypogaea HOM05D005296 ORTHO05D006452 1.8e-93 346.7 235 68.9
Migut.N00068 Erythranthe guttata HOM05D005296 ORTHO05D006452 2.3e-93 346.3 294 63.9
SEGI_03423 Sequoiadendron giganteum HOM05D005296 ORTHO05D006452 3.0e-93 345.9 235 71.1
CsaV3_6G022700 Cucumis sativus L. HOM05D005296 ORTHO05D006452 3.9e-93 345.5 233 70.8
arahy.Tifrunner.gnm1.ann1.5R3I64 Arachis hypogaea HOM05D005296 ORTHO05D006452 1.5e-92 343.6 235 68.1
Rhsim04G0228000 Rhododendron simsii HOM05D005296 ORTHO05D006452 2.6e-92 342.8 299 61.5
Actinidia40306 Actinidia chinensis HOM05D005296 ORTHO05D006452 4.4e-92 342.0 248 68.1
VMungo1215G1937 Vigna mungo HOM05D005296 ORTHO05D006452 4.8e-91 338.6 242 66.1
Lalb_Chr07g0182261 Lupinus albus HOM05D005296 ORTHO05D006452 1.5e-89 333.6 234 67.1
SalBow5G1780 Salvia bowleyana HOM05D005296 ORTHO05D006452 2.0e-89 333.2 286 63.6
Glyma.07G244600 Glycine max HOM05D005296 ORTHO05D006452 1.7e-88 330.1 234 66.7
ATR0730G096 Amborella trichopoda HOM05D005296 ORTHO05D006452 2.2e-88 329.7 237 65.4
ATR1131G025 Amborella trichopoda HOM05D005296 ORTHO05D006452 8.5e-88 327.8 238 63.9
Phvul.003G108300 Phaseolus vulgaris HOM05D005296 ORTHO05D006452 1.4e-87 327.0 233 67.0
Pp3c24_6150 Physcomitrium patens HOM05D005296 ORTHO05D006452 9.4e-87 324.3 240 64.6
Lj4g0000030 Lotus japonicus HOM05D005296 ORTHO05D006452 1.8e-85 320.1 257 61.5
Psat4g024760 Pisum sativum HOM05D005296 ORTHO05D006452 3.9e-85 318.9 219 66.7
Ca_21474_v3 Cicer arietinum L. HOM05D005296 ORTHO05D006452 5.7e-84 315.1 277 58.8
AagrBONN_evm.TU.Sc2ySwM_228.710 Anthoceros agrestis HOM05D005296 ORTHO05D006452 6.3e-83 311.6 233 65.7
Medtr4g120420 Medicago truncatula HOM05D005296 ORTHO05D006452 1.4e-82 310.5 219 64.8
FAN12G2682 Fragaria x ananassa HOM05D005296 ORTHO05D006452 2.4e-82 309.7 250 66.4
Duzib151G0219 Durio zibethinus HOM05D005296 ORTHO05D006452 4.1e-82 308.9 284 58.5
Ciclev10024287m.g Citrus clementina HOM05D005296 ORTHO05D006452 9.1e-82 307.8 222 71.6
ATR1127G052 Amborella trichopoda HOM05D005296 ORTHO05D006452 5.9e-81 305.1 236 60.6
ATR0916G003 Amborella trichopoda HOM05D005296 ORTHO05D006452 1.7e-80 303.5 228 62.3
SMO367G1004 Selaginella moellendorffii HOM05D005296 ORTHO05D006452 1.1e-79 300.8 235 64.7
Mapoly0019s0068 Marchantia polymorpha HOM05D005296 ORTHO05D006452 2.6e-76 289.7 234 63.7
MELO3C021303.2 Cucumis melo HOM05D005296 ORTHO05D006452 9.1e-74 281.2 237 60.8
COL.COLO4_03630 Corchorus olitorius HOM05D005296 ORTHO05D006452 2.2e-72 276.6 238 63.4
TPR.G22773 Trifolium pratense HOM05D005296 ORTHO05D006452 7.2e-71 271.6 185 66.5
EL10Ac3g04942 Beta vulgaris HOM05D005296 ORTHO05D006452 2.1e-70 270.0 183 68.9
DCAR_002489 Daucus carota HOM05D005296 ORTHO05D006452 1.0e-69 267.7 281 53.0
ClCG06G004890 Citrullus lanatus HOM05D005296 ORTHO05D006452 1.3e-67 260.8 281 55.2
SGA_v2.0_scaffold146G36237 Striga asiatica HOM05D005296 ORTHO05D006452 1.1e-66 257.7 224 58.9
SHI00197 Sapria himalayana HOM05D005296 ORTHO05D006452 4.5e-65 252.3 172 70.9
CBR_g37153 Chara braunii HOM05D005296 ORTHO05D006452 5.0e-64 248.8 286 47.2
CSS0013365 Camellia sinensis var. sinensis HOM05D005296 ORTHO05D006452 5.2e-61 238.8 239 55.6
Hund03087 Selenicereus undatus HOM05D005296 ORTHO05D006452 2.6e-60 236.5 163 73.0
Duzib212G0376 Durio zibethinus HOM05D005296 ORTHO05D006452 1.3e-59 234.2 196 60.2
FAN12G3138 Fragaria x ananassa HOM05D005296 ORTHO05D006452 5.4e-58 228.8 183 63.9
Lsat_1_v5_gn_6_76180 Lactuca sativa HOM05D002249 ORTHO05D002443 1.1e-55 221.1 236 55.5
HPP92_006907 Vanilla planifolia HOM05D005296 ORTHO05D006452 2.3e-53 213.4 212 57.1
CDE08G0885 Ceratophyllum demersum HOM05D005296 ORTHO05D006452 3.4e-52 209.5 179 62.0
Psat4g063800 Pisum sativum HOM05D005296 ORTHO05D006452 3.5e-49 199.5 120 70.0
Cre12.g494250 Chlamydomonas reinhardtii HOM05D005296 ORTHO05D006452 2.3e-48 196.8 293 41.0
MCO07G237 Micromonas commoda HOM05D005296 ORTHO05D006452 4.7e-46 189.1 240 46.2
TPR.G17880 Trifolium pratense HOM05D005296 ORTHO05D006452 1.7e-35 154.1 115 66.1
PGR031G0664 Punica granatum HOM05D005296 ORTHO05D006452 7.8e-33 145.2 273 39.9
SGA_v2.0_scaffold227G43235 Striga asiatica HOM05D005296 ORTHO05D006452 3.9e-32 142.9 135 56.3
MELO3C034931.2 Cucumis melo HOM05D005296 ORTHO05D006452 3.3e-31 139.8 99 71.7
CBR_g19333 Chara braunii HOM05D005296 ORTHO05D006452 1.4e-29 134.4 134 53.7
Ah.04g155180 Amaranthus hybridus HOM05D005296 ORTHO05D006452 1.7e-27 127.5 128 55.5
Psat4g063760 Pisum sativum HOM05D005296 ORTHO05D006452 1.7e-27 127.5 115 60.0
MD02G1019800 Malus domestica HOM05D005296 ORTHO05D006452 3.6e-22 109.8 73 74.0
arahy.Tifrunner.gnm1.ann1.GS2NMQ Arachis hypogaea HOM05D005296 ORTHO05D006452 1.7e-19 100.9 58 82.8
arahy.Tifrunner.gnm1.ann1.GK6QEP Arachis hypogaea HOM05D005296 ORTHO05D006452 7.3e-15 85.5 57 64.9
Hma1.2p1_0180F.1_g079860 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 3.6e-14 83.2 77 58.4
Hma1.2p1_0718F.1_g208290 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 4.8e-14 82.8 94 46.8
arahy.Tifrunner.gnm1.ann1.3T38WV Arachis hypogaea HOM05D005296 ORTHO05D006452 7.6e-12 75.5 57 59.6
Hma1.2p1_1570F.1_g291260 Hydrangea macrophylla HOM05D005296 ORTHO05D006452 1.1e-10 71.6 57 63.2


User provided reference genes

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