Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G15940 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 3.7e-123 444.9 223 100.0
Thhalv10026185m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 1.7e-120 436.0 224 98.2
AL7G39330 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 3.8e-120 434.9 224 97.8
Sp7g14390 Schrenkiella parvula HOM05D004309 ORTHO05D005588 3.2e-119 431.8 224 96.9
Carub.0007s2572 Capsella rubella HOM05D004309 ORTHO05D005588 9.3e-119 430.3 224 96.4
CARHR290520 Cardamine hirsuta HOM05D004309 ORTHO05D005588 3.9e-117 424.9 224 95.5
BolC8t48324H Brassica oleracea HOM05D004309 ORTHO05D005588 1.5e-116 422.9 224 94.2
BcaC07g37940 Brassica carinata HOM05D004309 ORTHO05D005588 2.5e-116 422.2 224 94.2
A08p12070 Brassica napus HOM05D004309 ORTHO05D005588 7.4e-116 420.6 224 93.3
BraA08t33198Z Brassica rapa HOM05D004309 ORTHO05D005588 7.4e-116 420.6 224 93.3
BcaB04g18344 Brassica carinata HOM05D004309 ORTHO05D005588 1.3e-115 419.9 224 93.3
Aa31LG10G6200 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.5e-108 396.4 272 78.3
A08p12080 Brassica napus HOM05D004309 ORTHO05D005588 1.8e-106 389.4 224 87.9
BraA08t33199Z Brassica rapa HOM05D004309 ORTHO05D005588 1.8e-106 389.4 224 87.9
Thhalv10021471m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 4.1e-106 388.3 222 86.0
THA.LOC104802581 Tarenaya hassleriana HOM05D004309 ORTHO05D005588 4.1e-106 388.3 224 85.3
Sp3g14970 Schrenkiella parvula HOM05D004309 ORTHO05D005588 6.9e-106 387.5 222 86.5
Carub.0003s1643 Capsella rubella HOM05D004309 ORTHO05D005588 9.1e-106 387.1 222 86.5
AL3G29630 Arabidopsis lyrata HOM05D004309 ORTHO05D005588 1.5e-105 386.3 224 86.6
BcaB04g18345 Brassica carinata HOM05D004309 ORTHO05D005588 4.5e-105 384.8 225 87.6
BcaC09g48622 Brassica carinata HOM05D004309 ORTHO05D005588 1.3e-104 383.3 222 86.0
BolC1t04737H Brassica oleracea HOM05D004309 ORTHO05D005588 1.3e-104 383.3 222 86.0
C01p47650 Brassica napus HOM05D004309 ORTHO05D005588 2.9e-104 382.1 222 85.6
A01p37620 Brassica napus HOM05D004309 ORTHO05D005588 8.5e-104 380.6 222 85.1
Aa31LG8G3800 Aethionema arabicum HOM05D004309 ORTHO05D005588 1.9e-103 379.4 224 83.9
BraA01t03822Z Brassica rapa HOM05D004309 ORTHO05D005588 2.5e-103 379.0 222 84.7
Atru.chr4.2894 Acer truncatum HOM05D004309 ORTHO05D005588 6.1e-102 374.4 220 82.3
Thecc.04G288300 Theobroma cacao HOM05D004309 ORTHO05D005588 1.7e-99 366.3 220 81.4
Sabra10G0006000 Salix brachista HOM05D004309 ORTHO05D005588 4.8e-99 364.8 216 81.9
GSVIVG01035117001 Vitis vinifera HOM05D004309 ORTHO05D005588 6.3e-99 364.4 222 80.6
Manes.03G198200 Manihot esculenta HOM05D004309 ORTHO05D005588 1.1e-98 363.6 220 80.5
Dinv29733 Davidia involucrata HOM05D004309 ORTHO05D005588 1.8e-98 362.8 222 79.3
Potri.010G011000 Populus trichocarpa HOM05D004309 ORTHO05D005588 2.4e-98 362.5 216 81.9
CANSAT78G0198 Cannabis sativa HOM05D004309 ORTHO05D005588 7.0e-98 360.9 220 80.9
Duzib212G0876 Durio zibethinus HOM05D004309 ORTHO05D005588 2.6e-97 359.0 220 79.5
PGR031G0395 Punica granatum HOM05D004309 ORTHO05D005588 2.6e-97 359.0 220 79.5
Ciclev10005665m.g Citrus clementina HOM05D004309 ORTHO05D005588 3.5e-97 358.6 255 71.0
Aqoxy2G02913 Aquilegia oxysepala HOM05D004309 ORTHO05D005588 1.0e-96 357.1 220 79.5
Actinidia00004 Actinidia chinensis HOM05D004309 ORTHO05D005588 1.3e-96 356.7 219 78.1
CiPaw.01G145800 Carya illinoinensis HOM05D004309 ORTHO05D005588 1.3e-96 356.7 220 80.5
ATR0150G025 Amborella trichopoda HOM05D004309 ORTHO05D005588 2.2e-96 355.9 220 77.3
CSS0011476 Camellia sinensis var. sinensis HOM05D004309 ORTHO05D005588 2.2e-96 355.9 220 79.1
CDE11G0079 Ceratophyllum demersum HOM05D004309 ORTHO05D005588 3.8e-96 355.1 215 79.5
PSO170G6503 Papaver somniferum HOM05D004309 ORTHO05D005588 3.8e-96 355.1 217 79.3
QL06p010180 Quercus lobata HOM05D004309 ORTHO05D005588 5.0e-96 354.8 223 78.9
Hma1.2p1_0078F.1_g040370 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.1e-95 353.6 220 78.6
PSO407G0025 Papaver somniferum HOM05D004309 ORTHO05D005588 1.1e-95 353.6 217 78.8
PSO444G0002 Papaver somniferum HOM05D004309 ORTHO05D005588 1.1e-95 353.6 217 78.8
TAR633G1513 Trochodendron aralioides HOM05D004309 ORTHO05D005588 1.5e-95 353.2 220 77.7
Sc19g0005430 Simmondsia chinensis HOM05D004309 ORTHO05D005588 1.9e-95 352.8 218 80.3
CAN.G1639.2 Capsicum annuum HOM05D004309 ORTHO05D005588 3.2e-95 352.1 217 78.8
Gohir.D01G023490 Gossypium hirsutum HOM05D004309 ORTHO05D005588 1.6e-94 349.7 220 78.2
Prupe.1G125100 Prunus persica HOM05D004309 ORTHO05D005588 1.6e-94 349.7 220 77.7
DCAR_023296 Daucus carota HOM05D004309 ORTHO05D005588 2.7e-94 349.0 225 77.8
Gorai.002G028600 Gossypium raimondii HOM05D004309 ORTHO05D005588 3.6e-94 348.6 220 77.7
Sed0001785 Sechium edule HOM05D004309 ORTHO05D005588 3.6e-94 348.6 209 80.4
SGA_v2.0_scaffold91G28010 Striga asiatica HOM05D004309 ORTHO05D005588 3.6e-94 348.6 220 78.6
Eucgr.C01303 Eucalyptus grandis HOM05D004309 ORTHO05D005588 4.7e-94 348.2 224 76.8
Psat4g026320 Pisum sativum HOM05D004309 ORTHO05D005588 8.0e-94 347.4 221 75.6
FvH4_4g18580 Fragaria vesca HOM05D004309 ORTHO05D005588 1.0e-93 347.1 214 79.4
Gohir.A01G033033 Gossypium hirsutum HOM05D004309 ORTHO05D005588 2.3e-93 345.9 220 76.8
ClCG05G006230 Citrullus lanatus HOM05D004309 ORTHO05D005588 3.0e-93 345.5 209 80.4
HanXRQChr06g0173801 Helianthus annuus HOM05D004309 ORTHO05D005588 5.2e-93 344.7 217 78.3
Cfa015422 Carpinus fangiana HOM05D004309 ORTHO05D005588 6.7e-93 344.4 221 78.7
Hund24883 Selenicereus undatus HOM05D004309 ORTHO05D005588 6.7e-93 344.4 217 77.9
Sopen01g028230 Solanum pennellii HOM05D004309 ORTHO05D005588 6.7e-93 344.4 217 76.5
Nitab4.5_0000695g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 8.8e-93 344.0 216 76.9
Nitab4.5_0006814g0040 Nicotiana tabacum HOM05D004309 ORTHO05D005588 1.1e-92 343.6 216 76.9
Rhsim04G0225000 Rhododendron simsii HOM05D004309 ORTHO05D005588 1.1e-92 343.6 215 78.1
vmacro08183 Vaccinium macrocarpon HOM05D004309 ORTHO05D005588 1.1e-92 343.6 216 78.7
Lsat_1_v5_gn_3_24101 Lactuca sativa HOM05D004309 ORTHO05D005588 2.0e-92 342.8 219 77.2
Lj4g0021722 Lotus japonicus HOM05D004309 ORTHO05D007726 2.0e-92 342.8 221 75.1
Solyc01g066480.3 Solanum lycopersicum HOM05D004309 ORTHO05D005588 2.0e-92 342.8 217 76.0
RcHm_v2.0_Chr4g0423181 Rosa chinensis HOM05D004309 ORTHO05D005588 2.6e-92 342.4 214 77.6
DCAR_027056 Daucus carota HOM05D004309 ORTHO05D005588 3.3e-92 342.0 220 75.5
Lalb_Chr07g0182331 Lupinus albus HOM05D004309 ORTHO05D005588 3.3e-92 342.0 221 74.7
CsaV3_3G014840 Cucumis sativus L. HOM05D004309 ORTHO05D005588 4.4e-92 341.7 221 76.5
Glyma.07G245900 Glycine max HOM05D004309 ORTHO05D005588 5.7e-92 341.3 222 74.8
TPR.G3211 Trifolium pratense HOM05D004309 ORTHO05D005588 5.7e-92 341.3 218 75.7
Glyma.17G028100 Glycine max HOM05D004309 ORTHO05D005588 7.5e-92 340.9 222 74.8
Cc03_g01580 Coffea canephora HOM05D004309 ORTHO05D005588 9.7e-92 340.5 217 75.6
arahy.Tifrunner.gnm1.ann1.9V15EM Arachis hypogaea HOM05D004309 ORTHO05D005588 1.7e-91 339.7 217 76.0
SalBow5G3240 Salvia bowleyana HOM05D004309 ORTHO05D005588 2.2e-91 339.3 217 74.7
Sed0024380 Sechium edule HOM05D004309 ORTHO05D005588 2.8e-91 339.0 220 75.9
ECA246G0235 Erigeron canadensis HOM05D004309 ORTHO05D005588 6.3e-91 337.8 215 77.2
Phvul.003G106800 Phaseolus vulgaris HOM05D004309 ORTHO05D005588 6.3e-91 337.8 222 74.8
VMungo1215G2421 Vigna mungo HOM05D004309 ORTHO05D005588 6.3e-91 337.8 222 74.3
arahy.Tifrunner.gnm1.ann1.YC35GQ Arachis hypogaea HOM05D004309 ORTHO05D007726 1.1e-90 337.0 217 75.6
Migut.N00082 Erythranthe guttata HOM05D004309 ORTHO05D005588 2.4e-90 335.9 217 73.7
unitig_749.g13387 Utricularia gibba HOM05D004309 ORTHO05D005588 4.1e-90 335.1 219 73.5
Lj3A823G59 Lonicera japonica HOM05D004309 ORTHO05D005588 7.0e-90 334.3 220 75.0
HPP92_010682 Vanilla planifolia HOM05D004309 ORTHO05D005588 1.2e-89 333.6 217 74.2
MELO3C006680.2 Cucumis melo HOM05D004309 ORTHO05D005588 1.7e-88 329.7 235 71.9
Medtr4g120230 Medicago truncatula HOM05D004309 ORTHO05D005588 6.5e-88 327.8 215 74.9
Oeu053993.1 Olea europaea HOM05D004309 ORTHO05D005588 6.5e-88 327.8 264 65.2
MSTRG.24800 Avicennia marina HOM05D004309 ORTHO05D005588 2.5e-87 325.9 212 73.6
Zm00001eb063500 Zea mays HOM05D004309 ORTHO05D005588 1.6e-86 323.2 226 69.9
EL10Ac3g06636 Beta vulgaris HOM05D004309 ORTHO05D005588 1.0e-85 320.5 206 75.2
SEGI_31265 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 3.0e-85 318.9 213 74.2
Zm00001eb053490 Zea mays HOM05D004309 ORTHO05D005588 6.8e-85 317.8 226 68.1
Os03g0829000 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 2.0e-84 316.2 220 70.9
TWI09G0267 Tripterygium wilfordii HOM05D004309 ORTHO05D005588 3.4e-84 315.5 220 72.3
Nn3g21534 Nelumbo nucifera HOM05D004309 ORTHO05D005588 1.4e-82 310.1 219 72.1
COL.COLO4_13828 Corchorus olitorius HOM05D005069 ORTHO05D006024 1.6e-81 306.6 185 80.5
Lj6A680G88 Lonicera japonica HOM05D004309 ORTHO05D005588 8.5e-80 300.8 220 67.3
AagrBONN_evm.TU.Sc2ySwM_344.4111 Anthoceros agrestis HOM05D004309 ORTHO05D005588 9.4e-79 297.4 223 65.9
CBR_g26355 Chara braunii HOM05D004309 ORTHO05D005588 1.8e-77 293.1 221 66.5
Mapoly0093s0048 Marchantia polymorpha HOM05D004309 ORTHO05D005588 4.0e-77 292.0 219 67.6
AUR62025637 Chenopodium quinoa HOM05D004309 ORTHO05D005588 6.8e-77 291.2 215 67.0
AUR62001364 Chenopodium quinoa HOM05D004309 ORTHO05D005588 8.8e-77 290.8 213 67.6
EL10Ac7g18188 Beta vulgaris HOM05D004309 ORTHO05D005588 6.3e-75 284.6 218 64.2
Pp3c9_26130 Physcomitrium patens HOM05D004309 ORTHO05D005588 4.1e-74 282.0 222 64.4
Ah.08g217630 Amaranthus hybridus HOM05D004309 ORTHO05D005588 1.2e-73 280.4 220 64.5
HPP92_010660 Vanilla planifolia HOM05D004309 ORTHO05D005588 5.0e-72 275.0 181 73.5
AUR62018079 Chenopodium quinoa HOM05D004309 ORTHO05D005588 4.7e-70 268.5 180 71.1
SMO347G0543 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.1e-62 243.0 216 58.3
FAN07G2872 Fragaria x ananassa HOM05D004309 ORTHO05D005588 2.3e-61 239.6 144 79.2
Cpa.g.sc50.169 Carica papaya HOM05D004309 ORTHO05D005588 1.2e-57 227.3 131 82.4
PRCOL_00005024 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 2.0e-57 226.5 231 50.2
Peaxi162Scf00065g01425 Petunia axillaris HOM05D004309 ORTHO05D005588 7.5e-52 208.0 130 75.4
Thhalv10026938m.g Eutrema salsugineum HOM05D004309 ORTHO05D005588 2.9e-51 206.1 118 90.7
FAN12G2807 Fragaria x ananassa HOM05D005069 ORTHO05D006024 2.4e-50 203.0 126 80.2
Eucgr.C01444 Eucalyptus grandis HOM05D004309 ORTHO05D005588 4.6e-49 198.7 126 77.8
AT3G16700 Arabidopsis thaliana HOM05D004309 ORTHO05D005588 1.7e-48 196.8 108 87.0
FAN12G1798 Fragaria x ananassa HOM05D004309 ORTHO05D005588 2.5e-47 193.0 120 80.0
Duzib151G0762 Durio zibethinus HOM05D004309 ORTHO05D005588 5.6e-47 191.8 146 64.4
Sc26g0002580 Simmondsia chinensis HOM05D004309 ORTHO05D005588 3.4e-44 182.6 125 70.4
Ciclev10006277m.g Citrus clementina HOM05D004309 ORTHO05D005588 7.3e-39 164.9 92 81.5
CARHR091950 Cardamine hirsuta HOM05D004309 ORTHO05D005588 1.8e-37 160.2 91 87.9
QL06p010208 Quercus lobata HOM05D004309 ORTHO05D005588 2.6e-36 156.4 129 67.4
Hma1.2p1_0078F.1_g040630 Hydrangea macrophylla HOM05D004309 ORTHO05D005588 1.3e-35 154.1 89 80.9
Haze_27427 Corylus avellana HOM05D004309 ORTHO05D005588 6.6e-32 141.7 204 42.2
Cfa022490 Carpinus fangiana HOM05D004309 ORTHO05D005588 2.1e-30 136.7 164 45.1
Ciclev10006783m.g Citrus clementina HOM05D004309 ORTHO05D005588 2.0e-28 130.2 91 71.4
SMO353G0001 Selaginella moellendorffii HOM05D004309 ORTHO05D005588 2.0e-28 130.2 219 36.5
SEGI_02276 Sequoiadendron giganteum HOM05D004309 ORTHO05D005588 7.6e-28 128.3 189 37.6
Cre12.g549450 Chlamydomonas reinhardtii HOM05D004309 ORTHO05D005588 3.8e-27 125.9 193 42.5
Os03g0421700 Oryza sativa ssp. japonica HOM05D004309 ORTHO05D005588 4.9e-27 125.6 94 62.8
Pp3c6_20080 Physcomitrium patens HOM05D004309 ORTHO05D005588 4.9e-27 125.6 219 35.6
Haze_27486 Corylus avellana HOM05D004309 ORTHO05D005588 1.9e-26 123.6 195 36.9
BcaC01g03621 Brassica carinata HOM05D004309 ORTHO05D005588 4.2e-26 122.5 93 71.0
ATR0326G053 Amborella trichopoda HOM05D004309 ORTHO05D005588 3.5e-25 119.4 77 76.6
Actinidia27753 Actinidia chinensis HOM05D004309 ORTHO05D005588 2.1e-22 110.2 88 61.4
MCO13G238 Micromonas commoda HOM05D004309 ORTHO05D005588 4.8e-22 109.0 216 34.7
Pp3s34_290 Physcomitrium patens HOM05D000879 ORTHO05D000265 1.1e-21 107.8 195 37.4
Peaxi162Scf00454g00328 Petunia axillaris HOM05D004309 ORTHO05D005588 9.0e-21 104.8 71 66.2
PRCOL_00000256 Prasinoderma coloniale HOM05D004309 ORTHO05D005588 4.5e-20 102.4 213 33.8
AagrBONN_evm.TU.Sc2ySwM_368.471 Anthoceros agrestis HOM05D004309 ORTHO05D005588 5.8e-20 102.1 172 34.3
AUR62024358 Chenopodium quinoa HOM05D002697 ORTHO05D003087 7.6e-20 101.7 71 70.4
RcHm_v2.0_Chr4g0423191 Rosa chinensis HOM05D004309 ORTHO05D005588 9.9e-20 101.3 71 73.2
BolC3t17332H Brassica oleracea HOM05D004309 ORTHO05D005588 2.2e-19 100.1 92 62.0
C03p50400 Brassica napus HOM05D004309 ORTHO05D005588 2.9e-19 99.8 92 60.9
Zm00001eb065520 Zea mays HOM05D002744 ORTHO05D008989 4.6e-17 92.4 70 62.9
Lsat_1_v5_gn_3_26221 Lactuca sativa HOM05D004309 ORTHO05D005588 7.9e-17 91.7 83 60.2
Prupe.1G124800 Prunus persica HOM05D004309 ORTHO05D005588 3.0e-16 89.7 60 75.0
MD04G1020300 Malus domestica HOM05D004309 ORTHO05D005588 3.9e-16 89.4 59 74.6
Peaxi162Scf00267g00046 Petunia axillaris HOM05D004309 ORTHO05D005588 3.9e-16 89.4 56 73.2
Zm00001eb419610 Zea mays HOM05D004309 ORTHO05D005588 5.6e-15 85.5 68 58.8
GSVIVG01010688001 Vitis vinifera HOM05D004309 ORTHO05D005588 1.4e-13 80.9 57 68.4
Cpa.g.sc50.168 Carica papaya HOM05D004309 ORTHO05D005588 3.4e-12 76.3 46 80.4
Lsat_1_v5_gn_8_151620 Lactuca sativa HOM05D004309 ORTHO05D012139 4.5e-12 75.9 53 75.5
Zm00001eb097870 Zea mays HOM05D004309 ORTHO05D026220 1.7e-11 73.9 68 51.5
Zm00001eb085600 Zea mays HOM05D001297 ORTHO05D001135 2.9e-11 73.2 65 52.3
Zm00001eb194540 Zea mays HOM05D004309 ORTHO05D026220 3.8e-11 72.8 64 53.1
Zm00001eb282740 Zea mays HOM05D004309 ORTHO05D005588 6.5e-11 72.0 66 53.0
Zm00001eb423340 Zea mays HOM05D004309 ORTHO05D026220 1.4e-10 70.9 59 55.9
Zm00001eb024340 Zea mays HOM05D004309 ORTHO05D026220 3.0e-08 63.2 57 52.6
Zm00001eb170420 Zea mays HOM05D004309 ORTHO05D026220 3.0e-08 63.2 48 62.5
RcHm_v2.0_Chr0c32g0501491 Rosa chinensis HOM05D004309 ORTHO05D005588 1.1e-07 61.2 39 69.2


User provided reference genes

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