Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G15750 Arabidopsis thaliana HOM05D007968 ORTHO05D010203 2.2e-91 339.0 172 100.0
AL7G39610 Arabidopsis lyrata HOM05D007968 ORTHO05D010203 2.5e-47 192.6 151 64.2
AL7G39620 Arabidopsis lyrata HOM05D007968 ORTHO05D010203 3.7e-46 188.7 171 60.2
Thhalv10026370m.g Eutrema salsugineum HOM05D007968 ORTHO05D010203 1.8e-37 159.8 173 52.6
Thhalv10026402m.g Eutrema salsugineum HOM05D007968 ORTHO05D010203 9.0e-29 131.0 167 43.1
AL1G64370 Arabidopsis lyrata HOM05D007968 ORTHO05D010203 1.8e-21 106.7 174 37.4
Carub.0001s4453 Capsella rubella HOM05D007968 ORTHO05D010203 9.1e-21 104.4 179 33.0
Aa31LG10G150 Aethionema arabicum HOM05D007968 ORTHO05D010203 1.3e-19 100.5 172 34.3
AT4G00872 Arabidopsis thaliana HOM05D007968 ORTHO05D010203 1.1e-18 97.4 173 35.3
Sp1g41750 Schrenkiella parvula HOM05D007968 ORTHO05D010203 5.5e-18 95.1 180 33.9
BcaB07g33167 Brassica carinata HOM05D007968 ORTHO05D010203 9.4e-18 94.4 182 35.2
AL6G52570 Arabidopsis lyrata HOM05D007968 ORTHO05D010203 2.1e-17 93.2 174 35.1
THA.LOC104822174 Tarenaya hassleriana HOM05D007968 ORTHO05D010203 2.1e-17 93.2 177 33.3
CARHR043880 Cardamine hirsuta HOM05D007968 ORTHO05D010203 1.0e-16 90.9 172 32.6
BraSC56t46384Z Brassica rapa HOM05D007968 ORTHO05D010203 3.0e-16 89.4 183 33.9
Carub.0006s3590 Capsella rubella HOM05D007968 ORTHO05D010203 3.9e-16 89.0 171 31.0
CARHR044320 Cardamine hirsuta HOM05D007968 ORTHO05D010203 3.9e-16 89.0 172 32.0
Thhalv10011943m.g Eutrema salsugineum HOM05D007968 ORTHO05D010203 1.1e-15 87.4 171 35.1
Potri.007G068300 Populus trichocarpa HOM05D007968 ORTHO05D010203 1.5e-15 87.0 154 33.1
AT3G12880 Arabidopsis thaliana HOM05D007968 ORTHO05D010203 4.4e-15 85.5 169 30.8
AL3G24550 Arabidopsis lyrata HOM05D007968 ORTHO05D010203 5.7e-15 85.1 169 30.8
Carub.0003s1224 Capsella rubella HOM05D007968 ORTHO05D010203 5.7e-15 85.1 169 30.8
BolC6t36179H Brassica oleracea HOM05D007968 ORTHO05D010203 9.7e-15 84.3 176 33.0
BcaC08g43678 Brassica carinata HOM05D007968 ORTHO05D010203 2.8e-14 82.8 173 32.9
Thecc.07G160500 Theobroma cacao HOM05D007968 ORTHO05D010203 6.3e-14 81.6 173 30.6
CARHR045850 Cardamine hirsuta HOM05D007968 ORTHO05D010203 1.4e-13 80.5 171 30.4
C06p10970 Brassica napus HOM05D007968 ORTHO05D010203 4.1e-13 79.0 168 32.7
CARHR087400 Cardamine hirsuta HOM05D007968 ORTHO05D010203 5.3e-13 78.6 178 28.7
Thhalv10022116m.g Eutrema salsugineum HOM05D007968 ORTHO05D010203 9.1e-13 77.8 169 30.2
Sp3g11020 Schrenkiella parvula HOM05D007968 ORTHO05D010203 2.0e-12 76.6 169 29.6
A05p36620 Brassica napus HOM05D007968 ORTHO05D010203 5.0e-11 72.0 169 29.0
BraA05t22464Z Brassica rapa HOM05D007968 ORTHO05D010203 5.0e-11 72.0 169 29.0
Sabra07G0056100 Salix brachista HOM05D007968 ORTHO05D010203 5.0e-11 72.0 154 29.2
BcaC05g29230 Brassica carinata HOM05D007968 ORTHO05D010203 1.4e-10 70.5 169 29.0
CANSAT01G1731 Cannabis sativa HOM05D004113 ORTHO05D005233 5.5e-10 68.6 138 31.2
Manes.14G011600 Manihot esculenta HOM05D007968 ORTHO05D010203 7.2e-10 68.2 153 28.8
BcaB06g25504 Brassica carinata HOM05D007968 ORTHO05D010203 9.4e-10 67.8 169 28.4
Psat0s10365g0080 Pisum sativum HOM05D004113 ORTHO05D005233 2.7e-09 66.2 137 29.2
Psat5g060000 Pisum sativum HOM05D004113 ORTHO05D005233 2.7e-09 66.2 137 29.2
Ciclev10002604m.g Citrus clementina HOM05D004113 ORTHO05D005233 3.6e-09 65.9 124 30.6
AT1G56100 Arabidopsis thaliana HOM05D007968 ORTHO05D010203 4.7e-09 65.5 90 41.1
CANSAT01G2965 Cannabis sativa HOM05D004113 ORTHO05D005233 4.7e-09 65.5 138 29.7
TPR.G34657 Trifolium pratense HOM05D004113 ORTHO05D005233 4.7e-09 65.5 143 29.4
Atru.chr4.844 Acer truncatum HOM05D004113 ORTHO05D005233 6.1e-09 65.1 126 31.0
arahy.Tifrunner.gnm1.ann1.FMR9EU Arachis hypogaea HOM05D004113 ORTHO05D005233 6.1e-09 65.1 136 32.4
arahy.Tifrunner.gnm1.ann1.PRK495 Arachis hypogaea HOM05D004113 ORTHO05D005233 8.0e-09 64.7 136 32.4
C05p55050 Brassica napus HOM05D007968 ORTHO05D010203 1.0e-08 64.3 132 29.5
BolC5t34173H Brassica oleracea HOM05D007968 ORTHO05D010203 1.0e-08 64.3 132 29.5
Atru.chr1.195 Acer truncatum HOM05D007968 ORTHO05D010203 1.8e-08 63.5 167 25.7
Peaxi162Scf00589g00001 Petunia axillaris HOM05D004113 ORTHO05D005233 3.0e-08 62.8 156 27.6
Lalb_Chr08g0238441 Lupinus albus HOM05D004113 ORTHO05D005233 3.9e-08 62.4 142 29.6
Medtr3g095980 Medicago truncatula HOM05D004113 ORTHO05D005233 3.9e-08 62.4 130 30.8
Ca_16933_v3 Cicer arietinum L. HOM05D004113 ORTHO05D005233 5.2e-08 62.0 140 30.0
Dinv06063 Davidia involucrata HOM05D004113 ORTHO05D005233 6.7e-08 61.6 127 26.0
Sopen11g001780 Solanum pennellii HOM05D004113 ORTHO05D005233 2.6e-07 59.7 151 26.5
SGA_v2.0_scaffold355G49762 Striga asiatica HOM05D004113 ORTHO05D005233 3.3e-07 59.3 140 32.1
BcaB02g09804 Brassica carinata HOM05D004113 ORTHO05D005233 9.7e-07 57.8 149 27.5
Aa31LG1G17330 Aethionema arabicum HOM05D004113 ORTHO05D005233 1.3e-06 57.4 143 26.6
Manes.03G045700 Manihot esculenta HOM05D004113 ORTHO05D005233 1.3e-06 57.4 140 29.3
BolC3t18417H Brassica oleracea HOM05D004113 ORTHO05D005233 1.7e-06 57.0 142 28.2
Cfa006645 Carpinus fangiana HOM05D014310 ORTHO05D003404 1.7e-06 57.0 168 25.0
PGSC0003DMG400028678 Solanum tuberosum HOM05D004113 ORTHO05D005233 1.7e-06 57.0 161 28.0
BcaC01g02692 Brassica carinata HOM05D004113 ORTHO05D005233 2.2e-06 56.6 129 29.5
C03p61580 Brassica napus HOM05D004113 ORTHO05D005233 2.2e-06 56.6 129 29.5
Potri.006G134900 Populus trichocarpa HOM05D004113 ORTHO05D003404 2.2e-06 56.6 140 27.9
MBI13_g01661_MAGBIO Magnolia biondii HOM05D000036 ORTHO05D002265 2.8e-06 56.2 131 29.8
BcaC01g02693 Brassica carinata HOM05D004113 ORTHO05D005233 4.8e-06 55.5 142 27.5
C03p61570 Brassica napus HOM05D004113 ORTHO05D005233 4.8e-06 55.5 142 27.5
MBI09_g01820_MAGBIO Magnolia biondii HOM05D001578 ORTHO05D001207 4.8e-06 55.5 171 25.1
Solyc11g005820.1 Solanum lycopersicum HOM05D004113 ORTHO05D005233 4.8e-06 55.5 156 27.6
Thhalv10005004m.g Eutrema salsugineum HOM05D004113 ORTHO05D005233 8.2e-06 54.7 144 25.0
THA.LOC104819318 Tarenaya hassleriana HOM05D004113 ORTHO05D005233 8.2e-06 54.7 137 28.5


User provided reference genes

Program Settings