Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G15640 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 2.4e-218 761.9 391 100.0
CARHR290040 Cardamine hirsuta HOM05D005247 ORTHO05D006571 2.1e-198 695.7 391 90.5
Carub.0007s2616 Capsella rubella HOM05D005247 ORTHO05D006571 1.7e-195 686.0 391 88.5
Thhalv10025397m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 4.0e-189 664.8 396 86.9
Sp7g13890 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.7e-184 649.4 395 85.3
AL7G39790 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 1.0e-181 640.2 330 96.7
Aa31LG9G1800 Aethionema arabicum HOM05D005247 ORTHO05D006571 2.2e-171 605.9 391 77.7
THA.LOC104802559 Tarenaya hassleriana HOM05D005247 ORTHO05D006571 2.3e-168 595.9 395 76.7
Sp3g19500 Schrenkiella parvula HOM05D005247 ORTHO05D006571 1.1e-167 593.6 395 77.0
BcaC05g28162 Brassica carinata HOM05D005247 ORTHO05D006571 4.2e-167 591.7 391 77.5
C05p41980 Brassica napus HOM05D005247 ORTHO05D006571 4.2e-167 591.7 391 77.5
A05p27200 Brassica napus HOM05D005247 ORTHO05D006571 5.2e-165 584.7 394 76.9
BraA05t21609Z Brassica rapa HOM05D005247 ORTHO05D006571 7.5e-164 580.9 399 76.2
BolC5t32932H Brassica oleracea HOM05D005247 ORTHO05D006571 2.2e-163 579.3 405 75.8
BcaB06g26247 Brassica carinata HOM05D005247 ORTHO05D006571 1.8e-162 576.2 391 75.7
AT3G21465 Arabidopsis thaliana HOM05D005247 ORTHO05D006571 2.8e-158 562.4 398 73.6
Carub.0003s2149 Capsella rubella HOM05D005247 ORTHO05D006571 1.3e-155 553.5 402 70.9
AL3G35540 Arabidopsis lyrata HOM05D005247 ORTHO05D006571 2.9e-155 552.4 394 73.9
BolC8t48291H Brassica oleracea HOM05D005247 ORTHO05D006571 2.6e-132 476.1 458 62.0
Thhalv10021000m.g Eutrema salsugineum HOM05D005247 ORTHO05D006571 5.8e-132 474.9 396 63.4
BcaB04g18303 Brassica carinata HOM05D005247 ORTHO05D006571 1.7e-128 463.4 297 80.5
QL06p007567 Quercus lobata HOM05D005247 ORTHO05D006571 6.6e-128 461.5 399 58.9
Prupe.1G141100 Prunus persica HOM05D005247 ORTHO05D006571 1.4e-125 453.8 400 57.5
Ciclev10005079m.g Citrus clementina HOM05D005247 ORTHO05D006571 2.0e-124 449.9 365 62.7
MD16G1174400 Malus domestica HOM05D005247 ORTHO05D006571 2.0e-124 449.9 400 57.8
Duzib151G0039 Durio zibethinus HOM05D005247 ORTHO05D006571 3.4e-124 449.1 393 59.8
Gohir.A09G233900 Gossypium hirsutum HOM05D005247 ORTHO05D006571 7.6e-124 448.0 390 60.0
MD13G1173000 Malus domestica HOM05D005247 ORTHO05D006571 1.3e-123 447.2 400 56.8
Gorai.006G257600 Gossypium raimondii HOM05D005247 ORTHO05D006571 3.8e-123 445.7 390 60.0
Atru.chr4.2766 Acer truncatum HOM05D005247 ORTHO05D006571 8.4e-123 444.5 406 57.6
Cpa.g.sc16.124 Carica papaya HOM05D005247 ORTHO05D006571 1.4e-122 443.7 379 59.4
Thecc.04G278500 Theobroma cacao HOM05D005247 ORTHO05D006571 1.9e-122 443.4 391 59.3
CSS0036429 Camellia sinensis var. sinensis HOM05D005247 ORTHO05D006571 1.3e-120 437.2 404 55.0
Hma1.2p1_0078F.1_g040780 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 1.3e-120 437.2 402 55.7
Lalb_Chr12g0196461 Lupinus albus HOM05D005247 ORTHO05D006571 3.9e-120 435.6 324 62.7
Gohir.D09G234700 Gossypium hirsutum HOM05D005247 ORTHO05D006571 5.1e-120 435.3 390 59.5
Lj4g0024405 Lotus japonicus HOM05D005247 ORTHO05D006571 8.7e-120 434.5 392 55.4
RcHm_v2.0_Chr4g0421281 Rosa chinensis HOM05D005247 ORTHO05D006571 1.9e-119 433.3 397 58.7
Psat5g125320 Pisum sativum HOM05D005247 ORTHO05D006571 2.5e-119 433.0 392 54.6
CiPaw.02G086000 Carya illinoinensis HOM05D005247 ORTHO05D006571 3.3e-119 432.6 397 55.9
Phvul.003G101400 Phaseolus vulgaris HOM05D005247 ORTHO05D006571 5.6e-119 431.8 307 66.1
Cfa015350 Carpinus fangiana HOM05D005247 ORTHO05D006571 1.6e-118 430.3 421 55.3
Nn7g38324 Nelumbo nucifera HOM05D005247 ORTHO05D006571 3.6e-118 429.1 404 55.0
Actinidia23422 Actinidia chinensis HOM05D005247 ORTHO05D006571 4.8e-118 428.7 405 54.3
Glyma.17G023300 Glycine max HOM05D005247 ORTHO05D006571 8.1e-118 427.9 323 62.5
TPR.G28788 Trifolium pratense HOM05D005247 ORTHO05D006571 1.8e-117 426.8 386 54.4
TAR362G0112 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.8e-117 426.8 401 56.1
Sc13g0003580 Simmondsia chinensis HOM05D005247 ORTHO05D006571 5.3e-117 425.2 321 61.7
PGR142G1936 Punica granatum HOM05D005247 ORTHO05D006571 6.9e-117 424.9 399 54.6
VMungo1215G2055 Vigna mungo HOM05D005247 ORTHO05D006571 2.9e-115 419.5 366 57.4
Medtr3g069790 Medicago truncatula HOM05D005247 ORTHO05D006571 8.4e-115 417.9 384 53.4
FAN07G0437 Fragaria x ananassa HOM05D005247 ORTHO05D006571 1.4e-114 417.2 389 57.6
Eucgr.H03774 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.9e-114 416.8 394 54.6
Glyma.07G251000 Glycine max HOM05D005247 ORTHO05D006571 3.2e-114 416.0 373 56.8
Aqoxy5G00647 Aquilegia oxysepala HOM05D005247 ORTHO05D006571 4.2e-114 415.6 406 52.5
Rhsim04G0216900 Rhododendron simsii HOM05D005247 ORTHO05D006571 5.5e-114 415.2 350 58.9
FvH4_4g17340 Fragaria vesca HOM05D005247 ORTHO05D006571 9.3e-114 414.5 388 57.0
Ca_21545_v3 Cicer arietinum L. HOM05D005247 ORTHO05D006571 1.6e-113 413.7 395 52.7
CANSAT78G0941 Cannabis sativa HOM05D005247 ORTHO05D006571 2.1e-113 413.3 392 55.6
FAN17G1560 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.5e-113 412.5 397 56.4
TWI09G0062 Tripterygium wilfordii HOM05D005247 ORTHO05D006571 1.0e-112 411.0 395 53.7
Potri.008G205300 Populus trichocarpa HOM05D005247 ORTHO05D006571 1.8e-112 410.2 390 54.9
TPR.G29803 Trifolium pratense HOM05D005247 ORTHO05D006571 3.9e-112 409.1 383 54.0
Cc03_g02260 Coffea canephora HOM05D005247 ORTHO05D006571 3.7e-110 402.5 407 52.6
GSVIVG01017794001 Vitis vinifera HOM05D005247 ORTHO05D006571 6.2e-110 401.7 325 61.2
Manes.15G016200 Manihot esculenta HOM05D005247 ORTHO05D006571 1.8e-109 400.2 324 59.3
FAN12G4219 Fragaria x ananassa HOM05D005247 ORTHO05D006571 3.1e-109 399.4 414 53.6
vmacro08197 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 3.1e-109 399.4 346 54.6
EL10Ac3g06569 Beta vulgaris HOM05D005247 ORTHO05D006571 4.5e-108 395.6 304 60.9
Solyc07g041930.3 Solanum lycopersicum HOM05D005247 ORTHO05D006571 1.3e-107 394.0 401 50.4
AUR62040732 Chenopodium quinoa HOM05D005247 ORTHO05D006571 1.7e-107 393.7 302 60.9
Sopen07g021430 Solanum pennellii HOM05D005247 ORTHO05D006571 1.4e-106 390.6 369 52.8
DCAR_024549 Daucus carota HOM05D005247 ORTHO05D006571 3.2e-106 389.4 328 59.5
Ah.13g074520 Amaranthus hybridus HOM05D005247 ORTHO05D006571 5.5e-106 388.7 392 51.5
ECA234G2791 Erigeron canadensis HOM05D005247 ORTHO05D006571 7.1e-106 388.3 321 57.3
Lsat_1_v5_gn_4_34220 Lactuca sativa HOM05D005247 ORTHO05D006571 9.3e-106 387.9 321 57.0
AUR62043783 Chenopodium quinoa HOM05D005247 ORTHO05D006571 2.1e-105 386.7 304 59.2
MSTRG.21809 Avicennia marina HOM05D005247 ORTHO05D006571 4.6e-105 385.6 335 55.5
CAN.G311.32 Capsicum annuum HOM05D005247 ORTHO05D006571 7.9e-105 384.8 317 55.8
Haze_01257 Corylus avellana HOM05D005247 ORTHO05D006571 3.0e-104 382.9 462 47.6
Nitab4.5_0001357g0080 Nicotiana tabacum HOM05D005247 ORTHO05D006571 3.0e-104 382.9 325 55.4
HanXRQChr17g0562111 Helianthus annuus HOM05D005247 ORTHO05D006571 1.1e-103 380.9 380 51.8
Nitab4.5_0006478g0050 Nicotiana tabacum HOM05D005247 ORTHO05D006571 1.5e-103 380.6 325 54.8
Nitab4.5_0009436g0020 Nicotiana tabacum HOM05D005247 ORTHO05D006571 4.3e-103 379.0 320 55.3
Peaxi162Scf00127g00146 Petunia axillaris HOM05D005247 ORTHO05D006571 5.7e-103 378.6 307 56.4
CsaV3_3G014210 Cucumis sativus L. HOM05D005247 ORTHO05D006571 2.1e-102 376.7 383 52.0
ClCG05G005860 Citrullus lanatus HOM05D005247 ORTHO05D006571 4.8e-102 375.6 384 52.1
arahy.Tifrunner.gnm1.ann1.8Y06GW Arachis hypogaea HOM05D005247 ORTHO05D006571 8.2e-102 374.8 344 54.1
PSO541G1846 Papaver somniferum HOM05D005247 ORTHO05D006571 1.4e-101 374.0 390 51.0
arahy.Tifrunner.gnm1.ann1.A4UT9N Arachis hypogaea HOM05D005247 ORTHO05D006571 1.8e-101 373.6 325 55.7
TAR633G1275 Trochodendron aralioides HOM05D005247 ORTHO05D006571 1.5e-100 370.5 321 57.3
Sed0017520 Sechium edule HOM05D005247 ORTHO05D006571 4.5e-100 369.0 388 52.3
PSO675G0879 Papaver somniferum HOM05D005247 ORTHO05D006571 1.7e-99 367.1 389 50.1
SGA_v2.0_scaffold89G27537 Striga asiatica HOM05D005247 ORTHO05D006571 2.9e-99 366.3 331 53.2
Nitab4.5_0000343g0170 Nicotiana tabacum HOM05D005247 ORTHO05D006571 5.5e-98 362.1 364 49.5
Dinv38319 Davidia involucrata HOM05D005247 ORTHO05D006571 9.3e-98 361.3 329 56.8
FAN12G3211 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.7e-97 359.8 330 55.5
Migut.N00115 Erythranthe guttata HOM05D005247 ORTHO05D006571 1.9e-95 353.6 324 52.5
ATR0706G238 Amborella trichopoda HOM05D005247 ORTHO05D006571 8.2e-94 348.2 389 47.3
SGA_v2.0_scaffold175G39318 Striga asiatica HOM05D005247 ORTHO05D006571 1.9e-90 337.0 341 49.3
Zm00001eb330100 Zea mays HOM05D005247 ORTHO05D006571 3.6e-89 332.8 358 47.2
Os07g0668200 Oryza sativa ssp. japonica HOM05D005247 ORTHO05D006571 6.1e-89 332.0 352 46.9
Dinv44420 Davidia involucrata HOM05D005247 ORTHO05D006571 3.0e-88 329.7 316 53.5
unitig_748.g7195 Utricularia gibba HOM05D005247 ORTHO05D006571 4.3e-87 325.9 316 49.1
MELO3C006614.2 Cucumis melo HOM05D005247 ORTHO05D006571 9.1e-85 318.2 300 55.3
Hma1.2p1_3003F.1_g331535 Hydrangea macrophylla HOM05D005247 ORTHO05D006571 2.9e-83 313.2 342 47.7
vmacro08194 Vaccinium macrocarpon HOM05D005247 ORTHO05D006571 2.8e-78 296.6 275 54.5
Atru.chr4.2761 Acer truncatum HOM05D005247 ORTHO05D006571 6.3e-78 295.4 282 55.0
Eucgr.H03753 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.7e-75 287.3 229 60.3
COL.COLO4_13921 Corchorus olitorius HOM05D005247 ORTHO05D006571 2.5e-74 283.5 357 45.1
Hund20585 Selenicereus undatus HOM05D005247 ORTHO05D006571 4.2e-74 282.7 276 55.1
Sabra08G0156600 Salix brachista HOM05D005247 ORTHO05D006571 7.5e-71 271.9 269 53.9
Psat4g226360 Pisum sativum HOM05D005247 ORTHO05D006571 5.9e-68 262.3 391 41.2
Lj6A670T87 Lonicera japonica HOM05D005247 ORTHO05D006571 5.5e-58 229.2 267 46.8
BraA08t33173Z Brassica rapa HOM05D005247 ORTHO05D006571 3.6e-57 226.5 123 88.6
RcHm_v2.0_Chr4g0421901 Rosa chinensis HOM05D005247 ORTHO05D006571 2.7e-52 210.3 187 56.1
SHI00299 Sapria himalayana HOM05D005247 ORTHO05D000987 1.1e-45 188.3 317 36.0
Eucgr.C02045 Eucalyptus grandis HOM05D005247 ORTHO05D006571 5.2e-40 169.5 132 60.6
BcaC07g37894 Brassica carinata HOM05D005247 ORTHO05D006571 8.9e-40 168.7 217 53.0
HPP92_013697 Vanilla planifolia HOM05D005247 ORTHO05D006571 2.7e-36 157.1 181 42.0
Pp3c14_15200 Physcomitrium patens HOM05D005247 ORTHO05D006571 1.3e-35 154.8 348 31.9
Psat5g177080 Pisum sativum HOM05D005247 ORTHO05D006571 1.3e-35 154.8 255 38.4
Sabra08G0156700 Salix brachista HOM05D005247 ORTHO05D006571 2.3e-32 144.1 123 58.5
Mapoly0002s0143 Marchantia polymorpha HOM05D005247 ORTHO05D006571 3.1e-32 143.7 351 27.1
AagrBONN_evm.TU.Sc2ySwM_228.2885 Anthoceros agrestis HOM05D005247 ORTHO05D006571 3.6e-25 120.2 221 34.8
SEGI_33954 Sequoiadendron giganteum HOM05D005247 ORTHO05D000001 8.1e-25 119.0 147 40.1
Psat6g103040 Pisum sativum HOM05D005247 ORTHO05D006571 6.8e-24 115.9 77 66.2
Eucgr.F02603 Eucalyptus grandis HOM05D005247 ORTHO05D006571 1.1e-21 108.6 68 67.6
RcHm_v2.0_Chr4g0421891 Rosa chinensis HOM05D005247 ORTHO05D006571 1.2e-20 105.1 110 52.7
SMO202G0041 Selaginella moellendorffii HOM05D005247 ORTHO05D006571 1.5e-18 98.2 254 26.0
Eucgr.H03759 Eucalyptus grandis HOM05D005247 ORTHO05D006571 9.6e-18 95.5 87 52.9
CBR_g30222 Chara braunii HOM05D005247 ORTHO05D006571 1.1e-16 92.0 284 23.9
Actinidia40231 Actinidia chinensis HOM05D005247 ORTHO05D006571 1.8e-16 91.3 91 49.5
CAN.G640.20 Capsicum annuum HOM05D005247 ORTHO05D006571 3.8e-14 83.6 114 38.6
CAN.G640.21 Capsicum annuum HOM05D005247 ORTHO05D006571 1.0e-11 75.5 68 51.5
FAN22G1325 Fragaria x ananassa HOM05D005247 ORTHO05D006571 2.4e-08 64.3 70 48.6
Pp3c14_7470 Physcomitrium patens HOM05D005247 ORTHO05D006571 4.0e-08 63.5 293 22.2
Eucgr.H03758 Eucalyptus grandis HOM05D005247 ORTHO05D006571 3.4e-07 60.5 38 60.5


User provided reference genes

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