Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G15530 Arabidopsis thaliana HOM05D003956 ORTHO05D004850 0.0e+00 1892.9 957 100.0
AL7G39990 Arabidopsis lyrata HOM05D003956 ORTHO05D004850 0.0e+00 1851.3 954 97.7
BcaNung00266 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1773.4 957 92.6
CARHR222330 Cardamine hirsuta HOM05D003956 ORTHO05D004850 0.0e+00 1773.1 956 94.0
C07p47210 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1766.9 954 92.3
Thhalv10024330m.g Eutrema salsugineum HOM05D003956 ORTHO05D004850 0.0e+00 1766.9 954 92.6
BolC7t45243H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1766.1 954 92.2
C01p27430 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1763.8 954 92.2
A01p22040 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1763.0 957 92.2
BraA01t02110Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1763.0 957 92.2
BcaC06g32940 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1762.3 954 92.6
BraA03t14011Z Brassica rapa HOM05D003956 ORTHO05D004850 0.0e+00 1756.5 954 91.9
BolC1t02682H Brassica oleracea HOM05D003956 ORTHO05D004850 0.0e+00 1754.6 961 91.6
Sp7g13780 Schrenkiella parvula HOM05D003956 ORTHO05D004850 0.0e+00 1739.9 955 91.3
A03p49170 Brassica napus HOM05D003956 ORTHO05D004850 0.0e+00 1737.2 942 91.8
Aa31LG9G1910 Aethionema arabicum HOM05D003956 ORTHO05D004850 0.0e+00 1684.8 955 88.6
BcaC09g50248 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1652.5 874 94.4
Carub.0007s2635 Capsella rubella HOM05D003956 ORTHO05D004850 0.0e+00 1649.4 855 96.6
THA.LOC104820228 Tarenaya hassleriana HOM05D003956 ORTHO05D004850 0.0e+00 1607.0 970 83.7
Manes.03G188300 Manihot esculenta HOM05D003956 ORTHO05D004850 0.0e+00 1541.2 961 80.9
CiPaw.01G156600 Carya illinoinensis HOM05D003956 ORTHO05D004850 0.0e+00 1533.9 969 79.7
PGR004G0287 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1533.5 963 80.4
TAR365G1004 Trochodendron aralioides HOM05D003956 ORTHO05D004850 0.0e+00 1531.2 970 79.8
Prupe.1G146600 Prunus persica HOM05D003956 ORTHO05D004850 0.0e+00 1530.8 962 79.7
Potri.010G027800 Populus trichocarpa HOM05D003956 ORTHO05D004850 0.0e+00 1528.8 905 84.6
QL06p006231 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1528.5 979 79.5
Duzib212G0153 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1526.9 974 79.1
Rhsim04G0213100 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1526.5 969 79.2
CANSAT78G1736 Cannabis sativa HOM05D003956 ORTHO05D004850 0.0e+00 1525.4 899 84.0
GSVIVG01017850001 Vitis vinifera HOM05D003956 ORTHO05D004850 0.0e+00 1524.6 953 81.0
Atru.chr4.2704 Acer truncatum HOM05D003956 ORTHO05D004850 0.0e+00 1524.2 963 80.1
TWI09G0935 Tripterygium wilfordii HOM05D003956 ORTHO05D004850 0.0e+00 1523.8 960 79.6
Gorai.011G181800 Gossypium raimondii HOM05D003956 ORTHO05D004850 0.0e+00 1521.9 893 84.2
Actinidia23451 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1518.1 929 81.6
Cfa015539 Carpinus fangiana HOM05D003956 ORTHO05D004850 0.0e+00 1517.7 963 80.3
Gohir.D10G162900 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1517.7 893 84.1
Peaxi162Scf00095g00414 Petunia axillaris HOM05D003956 ORTHO05D004850 0.0e+00 1516.9 889 84.6
Eucgr.H03642 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1514.2 963 79.0
Sopen01g032260 Solanum pennellii HOM05D003956 ORTHO05D004850 0.0e+00 1513.0 889 84.6
Haze_01011 Corylus avellana HOM05D003956 ORTHO05D004850 0.0e+00 1511.1 962 80.1
Solyc01g080460.3 Solanum lycopersicum HOM05D003956 ORTHO05D004850 0.0e+00 1510.4 889 84.4
CAN.G889.10 Capsicum annuum HOM05D003956 ORTHO05D004850 0.0e+00 1507.7 889 83.9
Sabra10G0012900 Salix brachista HOM05D003956 ORTHO05D004850 0.0e+00 1506.5 956 80.5
Dinv44455 Davidia involucrata HOM05D003956 ORTHO05D004850 0.0e+00 1503.4 894 83.2
Nn3g21184 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1503.4 900 82.7
RcHm_v2.0_Chr4g0420131 Rosa chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1502.3 955 79.1
FvH4_4g16670 Fragaria vesca HOM05D003956 ORTHO05D004850 0.0e+00 1501.1 956 78.3
MD16G1179500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1501.1 966 78.4
Ciclev10006837m.g Citrus clementina HOM05D003956 ORTHO05D004850 0.0e+00 1500.7 953 79.1
CsaV3_3G013930 Cucumis sativus L. HOM05D003956 ORTHO05D004850 0.0e+00 1500.3 943 80.4
MD13G1177500 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1496.5 992 76.0
Nitab4.5_0000059g0230 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1496.5 901 82.8
ECA240G3955 Erigeron canadensis HOM05D003956 ORTHO05D004850 0.0e+00 1493.8 895 82.2
Cc03_g02730 Coffea canephora HOM05D003956 ORTHO05D004850 0.0e+00 1493.4 893 82.8
FAN12G0499 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1493.4 969 77.3
FAN12G2270 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1493.4 969 77.3
Sed0002405 Sechium edule HOM05D003956 ORTHO05D004850 0.0e+00 1492.6 923 81.0
Nitab4.5_0010477g0010 Nicotiana tabacum HOM05D003956 ORTHO05D004850 0.0e+00 1491.9 915 81.6
Migut.G00282 Erythranthe guttata HOM05D003956 ORTHO05D004850 0.0e+00 1491.5 869 84.2
FAN22G1243 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1490.7 956 78.2
Actinidia40209 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1489.6 891 82.8
Glyma.07G253700 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1488.4 891 82.4
Lj4g0014830 Lotus japonicus HOM05D003956 ORTHO05D004850 0.0e+00 1488.4 965 76.7
FAN17G1489 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1488.0 966 77.4
TPR.G28132 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1485.7 958 78.1
Cpa.g.sc16.74 Carica papaya HOM05D003956 ORTHO05D004850 0.0e+00 1484.5 891 82.7
Ca_21564_v3 Cicer arietinum L. HOM05D003956 ORTHO05D004850 0.0e+00 1479.2 953 77.9
MD13G1177400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1476.8 873 83.4
VMungo1215G0684 Vigna mungo HOM05D003956 ORTHO05D004850 0.0e+00 1476.8 889 82.0
CSS0033563 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1476.5 872 83.7
FAN07G1911 Fragaria x ananassa HOM05D003956 ORTHO05D004850 0.0e+00 1475.3 900 81.2
Aqoxy2G03183 Aquilegia oxysepala HOM05D003956 ORTHO05D004850 0.0e+00 1473.4 972 76.2
Glyma.17G020600 Glycine max HOM05D003956 ORTHO05D004850 0.0e+00 1473.0 894 81.8
Phvul.003G098200 Phaseolus vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1468.8 952 77.2
QL06p005921 Quercus lobata HOM05D003956 ORTHO05D004850 0.0e+00 1464.9 873 82.9
Hund20662 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1464.1 891 81.3
PSO302G0065 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1460.7 892 80.3
MSTRG.10030 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1459.5 877 81.8
Lsat_1_v5_gn_5_51481 Lactuca sativa HOM05D003956 ORTHO05D004850 0.0e+00 1459.5 873 82.4
Nn4g26122 Nelumbo nucifera HOM05D003956 ORTHO05D004850 0.0e+00 1458.7 873 82.5
SalBow2G1708 Salvia bowleyana HOM05D003956 ORTHO05D004850 0.0e+00 1458.0 872 82.5
PSO170G3340 Papaver somniferum HOM05D003956 ORTHO05D004850 0.0e+00 1456.0 947 76.9
Lj3C806G12 Lonicera japonica HOM05D003956 ORTHO05D004850 0.0e+00 1455.7 895 81.5
MSTRG.10031 Avicennia marina HOM05D003956 ORTHO05D004850 0.0e+00 1454.9 873 81.8
Lalb_Chr13g0303991 Lupinus albus HOM05D003956 ORTHO05D004850 0.0e+00 1454.9 893 80.2
Duzib151G0049 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1450.3 916 79.3
Thecc.04G272600 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1446.8 931 79.1
MELO3C006585.2 Cucumis melo HOM05D003956 ORTHO05D004850 0.0e+00 1445.6 843 84.6
ATR0626G228 Amborella trichopoda HOM05D003956 ORTHO05D004850 0.0e+00 1443.7 878 81.3
Os05g0405000 Oryza sativa ssp. japonica HOM05D003956 ORTHO05D004850 0.0e+00 1443.7 887 79.8
PGSC0003DMG400032107 Solanum tuberosum HOM05D003956 ORTHO05D004850 0.0e+00 1443.3 845 84.5
MD16G1179300 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1441.8 858 82.9
SGA_v2.0_scaffold142G35643 Striga asiatica HOM05D003956 ORTHO05D004850 0.0e+00 1441.4 895 80.0
Sc25g0004550 Simmondsia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1440.2 857 83.4
Psat0ss7919g0200 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1439.9 857 82.0
CDE08G0632 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1438.3 876 80.3
Zm00001eb349810 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1436.4 874 80.4
Thecc.04G272800 Theobroma cacao HOM05D003956 ORTHO05D004850 0.0e+00 1431.4 876 80.4
Duzib151G0209 Durio zibethinus HOM05D003956 ORTHO05D004850 0.0e+00 1425.2 872 80.5
Hma1.2p1_0511F.1_g169230 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1423.3 880 81.2
MD16G1179400 Malus domestica HOM05D003956 ORTHO05D004850 0.0e+00 1421.8 857 82.1
DCAR_023283 Daucus carota HOM05D003956 ORTHO05D004850 0.0e+00 1421.4 910 78.5
arahy.Tifrunner.gnm1.ann1.EQKV61 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1414.1 950 75.8
arahy.Tifrunner.gnm1.ann1.YQ8C5N Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1411.4 853 81.5
CDE02G0811 Ceratophyllum demersum HOM05D003956 ORTHO05D004850 0.0e+00 1409.8 893 78.3
Hund19586 Selenicereus undatus HOM05D003956 ORTHO05D004850 0.0e+00 1409.4 843 81.5
arahy.Tifrunner.gnm1.ann1.I3NY02 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1398.6 904 77.2
Mapoly0009s0124 Marchantia polymorpha HOM05D003956 ORTHO05D004850 0.0e+00 1384.8 921 74.5
PGR031G3666 Punica granatum HOM05D003956 ORTHO05D004850 0.0e+00 1378.6 865 78.5
vmacro08238 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1378.2 1031 69.8
Pp3c5_22540 Physcomitrium patens HOM05D003956 ORTHO05D004850 0.0e+00 1377.1 870 77.5
AagrBONN_evm.TU.Sc2ySwM_228.3276 Anthoceros agrestis HOM05D003956 ORTHO05D004850 0.0e+00 1374.8 896 75.3
EL10Ac1g01820 Beta vulgaris HOM05D003956 ORTHO05D004850 0.0e+00 1374.8 890 77.9
BcaC09g50243 Brassica carinata HOM05D003956 ORTHO05D004850 0.0e+00 1371.7 780 88.7
ClCG05G005590 Citrullus lanatus HOM05D003956 ORTHO05D004850 0.0e+00 1370.9 931 75.8
Ah.11g043140 Amaranthus hybridus HOM05D003956 ORTHO05D004850 0.0e+00 1367.1 880 78.4
Rhsim02G0016700 Rhododendron simsii HOM05D003956 ORTHO05D004850 0.0e+00 1355.9 882 77.7
SMO351G0542 Selaginella moellendorffii HOM05D003956 ORTHO05D004850 0.0e+00 1352.8 870 75.7
unitig_26.g8936 Utricularia gibba HOM05D003956 ORTHO05D004850 0.0e+00 1340.1 869 76.9
Eucgr.B01186 Eucalyptus grandis HOM05D003956 ORTHO05D004850 0.0e+00 1337.4 823 79.6
Psat4g028880 Pisum sativum HOM05D003956 ORTHO05D004850 0.0e+00 1330.5 806 80.3
Oeu032695.1 Olea europaea HOM05D003956 ORTHO05D004850 0.0e+00 1327.4 771 84.4
Actinidia32373 Actinidia chinensis HOM05D003956 ORTHO05D004850 0.0e+00 1308.9 876 75.3
arahy.Tifrunner.gnm1.ann1.DC6B04 Arachis hypogaea HOM05D003956 ORTHO05D004850 0.0e+00 1305.4 904 73.1
CSS0013368 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1300.4 803 81.1
CSS0018237 Camellia sinensis var. sinensis HOM05D003956 ORTHO05D004850 0.0e+00 1269.6 882 74.9
Hma1.2p1_2025F.1_g311530 Hydrangea macrophylla HOM05D003956 ORTHO05D004850 0.0e+00 1245.0 880 73.6
Gohir.A10G105700 Gossypium hirsutum HOM05D003956 ORTHO05D004850 0.0e+00 1239.2 736 83.0
vmacro15287 Vaccinium macrocarpon HOM05D003956 ORTHO05D004850 0.0e+00 1228.4 878 72.1
Zm00001eb287770 Zea mays HOM05D003956 ORTHO05D004850 0.0e+00 1202.6 729 80.7
MCO12G211 Micromonas commoda HOM05D003956 ORTHO05D004850 0.0e+00 1198.7 857 69.2
TPR.G28133 Trifolium pratense HOM05D003956 ORTHO05D004850 0.0e+00 1175.6 874 68.6
Cre17.g734548 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 0.0e+00 1174.1 926 64.1
unitig_749.g14056 Utricularia gibba HOM05D003956 ORTHO05D004850 4.6e-311 1071.2 629 82.5
Cre10.g424750 Chlamydomonas reinhardtii HOM05D003956 ORTHO05D004850 3.4e-303 1045.0 883 59.9
Migut.G00280 Erythranthe guttata HOM05D003956 ORTHO05D004850 3.2e-285 985.3 580 82.9
Medtr4g118350 Medicago truncatula HOM05D003956 ORTHO05D004850 3.5e-263 912.1 621 74.2
MCO01G687 Micromonas commoda HOM05D003956 ORTHO05D004850 3.4e-258 895.6 910 54.2
AUR62034950 Chenopodium quinoa HOM05D003956 ORTHO05D004850 3.1e-211 739.6 492 76.4
AUR62035455 Chenopodium quinoa HOM05D003956 ORTHO05D004850 6.4e-209 731.9 445 82.0
AUR62035456 Chenopodium quinoa HOM05D003956 ORTHO05D004850 1.9e-205 720.3 504 73.8
HanXRQChr03g0080571 Helianthus annuus HOM05D003956 ORTHO05D004850 1.9e-189 667.2 417 80.3
AUR62034949 Chenopodium quinoa HOM05D003956 ORTHO05D004850 4.5e-186 656.0 449 74.4
CBR_g50184 Chara braunii HOM05D003956 ORTHO05D004850 2.1e-183 647.1 743 48.9
BcaC06g33414 Brassica carinata HOM05D003956 ORTHO05D004850 1.7e-177 627.5 335 92.8
SGA_v2.0_scaffold86G26866 Striga asiatica HOM05D003956 ORTHO05D004850 2.5e-160 570.5 470 64.0
Medtr4g118355 Medicago truncatula HOM05D003956 ORTHO05D004850 1.6e-135 488.0 295 80.3
SGA_v2.0_scaffold86G26865 Striga asiatica HOM05D003956 ORTHO05D004850 7.8e-130 469.2 390 62.6
AUR62034328 Chenopodium quinoa HOM05D003956 ORTHO05D004850 2.4e-107 394.4 421 52.7
arahy.Tifrunner.gnm1.ann1.9WT78J Arachis hypogaea HOM05D003956 ORTHO05D004850 7.6e-101 372.9 318 63.2
HanXRQChr16g0518081 Helianthus annuus HOM05D003956 ORTHO05D004850 9.3e-91 339.3 216 78.2
arahy.Tifrunner.gnm1.ann1.HZTZ4X Arachis hypogaea HOM05D003956 ORTHO05D004850 1.6e-82 312.0 258 63.2
arahy.Tifrunner.gnm1.ann1.7LSJ4G Arachis hypogaea HOM05D003956 ORTHO05D004850 3.9e-65 254.2 227 61.7
arahy.Tifrunner.gnm1.ann1.989M5Y Arachis hypogaea HOM05D003956 ORTHO05D004850 6.5e-60 236.9 216 58.3
unitig_749.g14057 Utricularia gibba HOM05D003956 ORTHO05D004850 1.3e-55 222.6 151 70.9
AagrBONN_evm.TU.Sc2ySwM_362.937 Anthoceros agrestis HOM05D003956 ORTHO05D004850 6.5e-44 183.7 119 72.3
BcaC09g50244 Brassica carinata HOM05D003956 ORTHO05D004850 2.2e-39 168.7 85 97.6
arahy.Tifrunner.gnm1.ann1.S9XVUY Arachis hypogaea HOM05D003956 ORTHO05D004850 4.1e-38 164.5 268 39.2
Pp3c6_6540 Physcomitrium patens HOM05D003956 ORTHO05D004850 8.6e-36 156.8 118 66.9
GSVIVG01018502001 Vitis vinifera HOM05D003956 ORTHO05D004850 4.5e-29 134.4 81 79.0
arahy.Tifrunner.gnm1.ann1.LGH8AH Arachis hypogaea HOM05D003956 ORTHO05D004850 3.8e-28 131.3 83 73.5
Lsat_1_v5_gn_2_81921 Lactuca sativa HOM05D005278 ORTHO05D006500 3.6e-26 124.8 96 64.6
Pp3s196_40 Physcomitrium patens HOM05D003956 ORTHO05D044360 1.3e-23 116.3 448 26.3
QL06p005983 Quercus lobata HOM05D003956 ORTHO05D004850 6.4e-23 114.0 130 52.3
BcaC09g50249 Brassica carinata HOM05D003956 ORTHO05D004850 8.3e-23 113.6 81 67.9
arahy.Tifrunner.gnm1.ann1.G5444S Arachis hypogaea HOM05D003956 ORTHO05D004850 1.7e-20 105.9 95 61.1
TPR.G26738 Trifolium pratense HOM05D003956 ORTHO05D000576 6.6e-20 104.0 64 73.4
TPR.G35464 Trifolium pratense HOM05D003956 ORTHO05D004850 6.4e-15 87.4 60 65.0
MBI15_g32557_MAGBIO Magnolia biondii HOM05D001670 ORTHO05D011598 2.5e-11 75.5 57 70.2
arahy.Tifrunner.gnm1.ann1.V4Y3U4 Arachis hypogaea HOM05D003956 ORTHO05D004850 9.5e-11 73.6 49 73.5
arahy.Tifrunner.gnm1.ann1.57CL3B Arachis hypogaea HOM05D003956 ORTHO05D004850 1.6e-10 72.8 46 76.1
Nn8g40271 Nelumbo nucifera HOM05D001541 ORTHO05D001465 1.1e-09 70.1 63 58.7
HanXRQChr09g0261911 Helianthus annuus HOM05D000495 ORTHO05D000357 8.9e-09 67.0 43 69.8
Pp3c5_22980 Physcomitrium patens HOM05D003956 ORTHO05D004850 3.4e-08 65.1 43 69.8
SGA_v2.0_scaffold86G26869 Striga asiatica HOM05D000924 ORTHO05D001209 4.4e-08 64.7 46 67.4
arahy.Tifrunner.gnm1.ann1.GGZS5I Arachis hypogaea HOM05D003956 ORTHO05D004850 4.1e-06 58.2 43 65.1


User provided reference genes

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