Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G14970 Arabidopsis thaliana HOM05D007170 ORTHO05D009243 0.0e+00 2852.8 1477 100.0
AL7G40850 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 0.0e+00 2679.4 1480 94.1
BcaB04g18275 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 2431.8 1482 86.1
Thhalv10024215m.g Eutrema salsugineum HOM05D007170 ORTHO05D009243 0.0e+00 2409.4 1484 85.4
BolC8t48255H Brassica oleracea HOM05D007170 ORTHO05D009243 0.0e+00 2397.1 1498 84.4
BcaC07g37864 Brassica carinata HOM05D007170 ORTHO05D009243 0.0e+00 2394.4 1482 84.9
BraA08t33150Z Brassica rapa HOM05D007170 ORTHO05D009243 0.0e+00 2390.5 1461 85.5
A08p11580 Brassica napus HOM05D007170 ORTHO05D009243 0.0e+00 2383.2 1461 85.1
Prupe.3G191100 Prunus persica HOM05D007170 ORTHO05D009243 0.0e+00 1577.0 1463 60.2
Potri.006G023500 Populus trichocarpa HOM05D007170 ORTHO05D009243 0.0e+00 1570.1 1454 59.6
Cfa020492 Carpinus fangiana HOM05D007170 ORTHO05D009243 0.0e+00 1568.9 1480 58.1
Sabra06G0017000 Salix brachista HOM05D007170 ORTHO05D009243 0.0e+00 1565.8 1483 58.9
Atru.chr8.950 Acer truncatum HOM05D007170 ORTHO05D009243 0.0e+00 1564.7 1475 58.6
RcHm_v2.0_Chr2g0154431 Rosa chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1559.7 1446 59.6
Duzib138G0290 Durio zibethinus HOM05D007170 ORTHO05D009243 0.0e+00 1559.3 1465 58.6
TAR626G1158 Trochodendron aralioides HOM05D007170 ORTHO05D009243 0.0e+00 1549.6 1463 57.8
Haze_09546 Corylus avellana HOM05D007170 ORTHO05D009243 0.0e+00 1545.8 1504 57.3
MD09G1135500 Malus domestica HOM05D007170 ORTHO05D009243 0.0e+00 1544.3 1456 58.4
FvH4_6g39900 Fragaria vesca HOM05D007170 ORTHO05D009243 0.0e+00 1542.7 1434 59.2
CANSAT64G1590 Cannabis sativa HOM05D007170 ORTHO05D009243 0.0e+00 1530.0 1467 57.9
Gohir.D07G192100 Gossypium hirsutum HOM05D007170 ORTHO05D009243 0.0e+00 1525.0 1469 57.8
GSVIVG01020797001 Vitis vinifera HOM05D007170 ORTHO05D009243 0.0e+00 1523.8 1471 57.3
Gorai.001G214900 Gossypium raimondii HOM05D007170 ORTHO05D009243 0.0e+00 1519.2 1469 57.9
CiPaw.03G198500 Carya illinoinensis HOM05D007170 ORTHO05D009243 0.0e+00 1511.5 1430 58.3
Actinidia06806 Actinidia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1507.7 1464 56.7
Nn3g20634 Nelumbo nucifera HOM05D007170 ORTHO05D009243 0.0e+00 1503.0 1451 56.9
FAN14G4936 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1497.6 1460 57.4
FAN02G4004 Fragaria x ananassa HOM05D007170 ORTHO05D009243 0.0e+00 1497.3 1467 57.7
Ciclev10010909m.g Citrus clementina HOM05D007170 ORTHO05D009243 0.0e+00 1492.2 1390 58.7
Thecc.01G177100 Theobroma cacao HOM05D007170 ORTHO05D009243 0.0e+00 1491.5 1371 59.4
Manes.09G075018 Manihot esculenta HOM05D007170 ORTHO05D009243 0.0e+00 1482.2 1476 55.8
MBI02_g15149_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 0.0e+00 1417.9 1514 53.2
PGR031G3275 Punica granatum HOM05D007170 ORTHO05D009243 0.0e+00 1414.1 1477 54.1
DCAR_006644 Daucus carota HOM05D007170 ORTHO05D009243 0.0e+00 1394.4 1475 53.4
Eucgr.A00891 Eucalyptus grandis HOM05D007170 ORTHO05D009243 0.0e+00 1385.9 1465 54.2
Sc07g0002130 Simmondsia chinensis HOM05D007170 ORTHO05D009243 0.0e+00 1383.2 1426 54.1
PSO541G2476 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1376.3 1463 52.1
Lsat_1_v5_gn_2_66140 Lactuca sativa HOM05D007170 ORTHO05D009243 0.0e+00 1374.4 1459 52.3
Sopen01g040790 Solanum pennellii HOM05D007170 ORTHO05D009243 0.0e+00 1370.9 1477 52.3
PSO675G2674 Papaver somniferum HOM05D007170 ORTHO05D009243 0.0e+00 1370.5 1467 51.9
Aqoxy3G00362 Aquilegia oxysepala HOM05D007170 ORTHO05D009243 0.0e+00 1369.0 1472 52.1
Solyc01g097110.2 Solanum lycopersicum HOM05D007170 ORTHO05D009243 0.0e+00 1365.5 1477 52.2
Nitab4.5_0002247g0080 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1350.1 1508 51.3
HanXRQChr10g0314771 Helianthus annuus HOM05D007170 ORTHO05D009243 0.0e+00 1343.2 1464 52.4
Cc02_g31000 Coffea canephora HOM05D007170 ORTHO05D009243 0.0e+00 1338.6 1464 51.9
Peaxi162Scf00647g00012 Petunia axillaris HOM05D007170 ORTHO05D009243 0.0e+00 1335.1 1508 51.4
ATR1098G002 Amborella trichopoda HOM05D007170 ORTHO05D009243 0.0e+00 1274.6 1453 50.0
Nitab4.5_0005905g0020 Nicotiana tabacum HOM05D007170 ORTHO05D009243 0.0e+00 1273.8 1511 49.3
CSS0034103 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 0.0e+00 1264.6 1216 57.5
Cpa.g.sc8.299 Carica papaya HOM05D007170 ORTHO05D009243 0.0e+00 1261.1 1471 50.8
SGA_v2.0_scaffold172G38980 Striga asiatica HOM05D007170 ORTHO05D009243 0.0e+00 1220.3 1562 46.2
SalBow8G4071 Salvia bowleyana HOM05D007170 ORTHO05D009243 0.0e+00 1209.9 1491 47.4
ECA238G4341 Erigeron canadensis HOM05D007170 ORTHO05D009243 0.0e+00 1205.7 1349 51.4
Oeu038464.1 Olea europaea HOM05D007170 ORTHO05D009243 0.0e+00 1205.7 1528 47.0
Lj7A482G28 Lonicera japonica HOM05D007170 ORTHO05D009243 0.0e+00 1118.2 1353 48.9
Zm00001eb117500 Zea mays HOM05D007170 ORTHO05D009243 1.3e-293 1013.8 1273 46.0
Migut.B01114 Erythranthe guttata HOM05D007170 ORTHO05D009243 2.7e-278 963.0 1227 47.9
SEGI_23823 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 4.5e-270 935.6 1240 44.0
Dinv20277 Davidia involucrata HOM05D007170 ORTHO05D009243 1.6e-262 910.6 764 63.1
Os07g0154400 Oryza sativa ssp. japonica HOM05D007170 ORTHO05D009243 1.4e-258 897.5 1092 47.7
CSS0006494 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 1.8e-258 897.1 970 53.1
Pp3c3_20180 Physcomitrium patens HOM05D007170 ORTHO05D009243 5.4e-255 885.6 1450 38.0
Mapoly0001s0378 Marchantia polymorpha HOM05D007170 ORTHO05D009243 3.0e-253 879.8 1537 37.5
CSS0002264 Camellia sinensis var. sinensis HOM05D007170 ORTHO05D009243 5.2e-250 869.0 969 51.8
Gohir.A07G185500 Gossypium hirsutum HOM05D007170 ORTHO05D009243 1.9e-247 860.5 923 53.2
CARHR221630 Cardamine hirsuta HOM05D007170 ORTHO05D009243 7.9e-206 722.2 405 91.9
Hma1.2p1_0892F.1_g233440 Hydrangea macrophylla HOM05D007170 ORTHO05D009243 2.0e-193 681.0 561 65.6
HPP92_019550 Vanilla planifolia HOM05D007170 ORTHO05D009243 4.8e-187 659.8 678 52.2
AagrBONN_evm.TU.Sc2ySwM_344.1322 Anthoceros agrestis HOM05D007170 ORTHO05D009243 1.0e-184 652.1 1212 36.1
CAN.G134.71 Capsicum annuum HOM05D007170 ORTHO05D009243 6.1e-174 616.3 546 58.6
CARHR221660 Cardamine hirsuta HOM05D007170 ORTHO05D009243 1.7e-155 555.1 324 86.4
Dinv20276 Davidia involucrata HOM05D007170 ORTHO05D009243 1.3e-152 545.4 630 50.5
CBR_g3147 Chara braunii HOM05D007170 ORTHO05D009243 1.5e-143 515.4 979 33.6
HPP92_019551 Vanilla planifolia HOM05D007170 ORTHO05D009243 1.5e-140 505.4 749 41.9
CAN.G134.69 Capsicum annuum HOM05D007170 ORTHO05D009243 4.9e-99 367.5 701 37.2
CARHR221670 Cardamine hirsuta HOM05D007170 ORTHO05D009243 6.2e-94 350.5 198 91.4
CARHR221650 Cardamine hirsuta HOM05D007170 ORTHO05D009243 3.1e-77 295.0 197 83.2
Gohir.A07G185533 Gossypium hirsutum HOM05D007170 ORTHO05D009243 1.4e-69 269.6 205 64.9
CARHR221640 Cardamine hirsuta HOM05D007170 ORTHO05D009243 4.7e-65 254.6 157 84.7
Dinv20273 Davidia involucrata HOM05D007170 ORTHO05D009243 7.9e-65 253.8 254 54.7
COL.COLO4_06563 Corchorus olitorius HOM05D007170 ORTHO05D009243 4.8e-46 191.4 125 72.0
CBR_g54165 Chara braunii HOM05D000019 ORTHO05D000048 7.7e-44 184.1 235 41.7
SEGI_21897 Sequoiadendron giganteum HOM05D007170 ORTHO05D009243 8.5e-43 180.6 241 44.8
CDE07G1176 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 4.2e-42 178.3 149 63.1
QL08p022040 Quercus lobata HOM05D007170 ORTHO05D009243 2.8e-38 165.6 131 61.1
Carub.0007s2712 Capsella rubella HOM05D007170 ORTHO05D009243 2.7e-36 159.1 110 85.5
Cpa.g.sc8.300 Carica papaya HOM05D007170 ORTHO05D009243 2.7e-36 159.1 121 66.1
Zm00001eb046090 Zea mays HOM05D007170 ORTHO05D009243 1.0e-27 130.6 213 38.5
Dinv20272 Davidia involucrata HOM05D007170 ORTHO05D009243 8.9e-24 117.5 88 65.9
Zm00001eb031530 Zea mays HOM05D007170 ORTHO05D009243 7.0e-21 107.8 113 43.4
Zm00001eb010760 Zea mays HOM05D007170 ORTHO05D009243 7.8e-20 104.4 113 42.5
Zm00001eb442000 Zea mays HOM05D007170 ORTHO05D009243 7.8e-20 104.4 113 42.5
QL02p039588 Quercus lobata HOM05D007170 ORTHO05D009243 1.2e-17 97.1 213 34.3
MBI08_g17991_MAGBIO Magnolia biondii HOM05D007170 ORTHO05D009243 4.7e-17 95.1 81 61.7
AL3G45770 Arabidopsis lyrata HOM05D007170 ORTHO05D009243 8.0e-17 94.4 66 89.4
Lj7A482T28 Lonicera japonica HOM05D007170 ORTHO05D009243 1.0e-11 77.4 119 42.9
GSVIVG01038387001 Vitis vinifera HOM05D007170 ORTHO05D009243 1.0e-11 77.4 51 74.5
C03p18330 Brassica napus HOM05D007170 ORTHO05D041508 1.6e-09 70.1 35 94.3
COL.COLO4_06564 Corchorus olitorius HOM05D007170 ORTHO05D009243 2.8e-09 69.3 134 37.3
Zm00001eb008220 Zea mays HOM05D007170 ORTHO05D009243 1.2e-07 63.9 115 37.4
GSVIVG01038403001 Vitis vinifera HOM05D007170 ORTHO05D009243 4.4e-07 62.0 40 72.5
CDE07G1841 Ceratophyllum demersum HOM05D007170 ORTHO05D009243 6.4e-06 58.2 99 34.3
TAR365G0197 Trochodendron aralioides HOM05D000751 ORTHO05D000889 6.4e-06 58.2 45 62.2
Gohir.D05G057900 Gossypium hirsutum HOM05D003337 ORTHO05D003808 8.3e-06 57.8 402 19.9
Gorai.009G059000 Gossypium raimondii HOM05D003337 ORTHO05D003808 8.3e-06 57.8 402 19.9


User provided reference genes

Program Settings