Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G14805 Arabidopsis thaliana HOM05D007411 ORTHO05D009025 5.8e-113 411.0 220 100.0
AL7G41060 Arabidopsis lyrata HOM05D007411 ORTHO05D009025 4.0e-90 335.1 219 85.8
CARHR221360 Cardamine hirsuta HOM05D007411 ORTHO05D009025 1.3e-77 293.5 211 75.4
Thhalv10027383m.g Eutrema salsugineum HOM05D007411 ORTHO05D009025 1.4e-71 273.5 228 73.2
Carub.0007s2732 Capsella rubella HOM05D007411 ORTHO05D009025 2.4e-66 256.1 197 69.5
A05p15610 Brassica napus HOM05D007411 ORTHO05D009025 4.5e-65 251.9 222 64.9
Sp7g12940 Schrenkiella parvula HOM05D007411 ORTHO05D009025 3.8e-64 248.8 210 66.7
BcaB04g18262 Brassica carinata HOM05D007411 ORTHO05D009025 5.0e-64 248.4 219 64.4
A05p16750 Brassica napus HOM05D007411 ORTHO05D009025 3.2e-63 245.7 222 64.0
BolC6t36888H Brassica oleracea HOM05D007411 ORTHO05D009025 4.2e-63 245.4 224 63.8
BraA05t20476Z Brassica rapa HOM05D007411 ORTHO05D009025 5.5e-63 245.0 224 63.8
BcaC08g44271 Brassica carinata HOM05D007411 ORTHO05D009025 2.7e-62 242.7 222 63.5
C06p16920 Brassica napus HOM05D007411 ORTHO05D009025 6.7e-61 238.0 246 58.1
BcaC02g11603 Brassica carinata HOM05D007411 ORTHO05D009025 2.8e-59 232.6 179 69.3
C04p13410 Brassica napus HOM05D007411 ORTHO05D009025 2.8e-59 232.6 179 69.3
BraA05t20579Z Brassica rapa HOM05D007411 ORTHO05D009025 2.8e-59 232.6 217 62.7
BcaB02g07857 Brassica carinata HOM05D007411 ORTHO05D009025 3.1e-58 229.2 199 64.3
A08p11480 Brassica napus HOM05D007411 ORTHO05D009025 2.5e-55 219.5 168 70.8
BraA08t33142Z Brassica rapa HOM05D007411 ORTHO05D009025 1.6e-54 216.9 159 71.7
BcaC07g37855 Brassica carinata HOM05D007411 ORTHO05D009025 3.3e-52 209.1 140 74.3
BolC8t48245H Brassica oleracea HOM05D007411 ORTHO05D009025 3.3e-52 209.1 140 74.3
THA.LOC104808560 Tarenaya hassleriana HOM05D007411 ORTHO05D009025 8.2e-43 177.9 168 57.7
CiPaw.01G198400 Carya illinoinensis HOM05D007411 ORTHO05D009025 5.9e-25 118.6 178 41.6
FvH4_4g15980 Fragaria vesca HOM05D007411 ORTHO05D009025 2.3e-24 116.7 203 37.9
FAN17G1166 Fragaria x ananassa HOM05D007411 ORTHO05D009025 3.8e-24 115.9 214 37.4
Ciclev10006648m.g Citrus clementina HOM05D007411 ORTHO05D009025 5.0e-24 115.5 110 56.4
FAN07G0509 Fragaria x ananassa HOM05D007411 ORTHO05D009025 6.6e-24 115.2 174 42.0
Gohir.A09G217300 Gossypium hirsutum HOM05D007411 ORTHO05D009025 8.6e-24 114.8 166 44.6
Cfa008473 Carpinus fangiana HOM05D007411 ORTHO05D009025 1.1e-23 114.4 104 56.7
ECA236G4939 Erigeron canadensis HOM05D007411 ORTHO05D009025 1.1e-23 114.4 159 42.1
Prupe.1G017200 Prunus persica HOM05D007411 ORTHO05D009025 1.1e-23 114.4 213 37.1
Gorai.006G240700 Gossypium raimondii HOM05D007411 ORTHO05D009025 2.5e-23 113.2 166 44.0
MD13G1196400 Malus domestica HOM05D007411 ORTHO05D009025 2.5e-23 113.2 105 52.4
FAN22G0418 Fragaria x ananassa HOM05D007411 ORTHO05D009025 3.3e-23 112.8 209 37.3
Gohir.D09G219700 Gossypium hirsutum HOM05D007411 ORTHO05D009025 3.3e-23 112.8 164 44.5
Dinv14014 Davidia involucrata HOM05D007411 ORTHO05D009025 4.3e-23 112.5 159 44.7
QL06p001698 Quercus lobata HOM05D007411 ORTHO05D009025 4.3e-23 112.5 179 40.8
TWI09G1055 Tripterygium wilfordii HOM05D007411 ORTHO05D009025 5.6e-23 112.1 166 41.0
arahy.Tifrunner.gnm1.ann1.SC2WWN Arachis hypogaea HOM05D007411 ORTHO05D009025 3.6e-22 109.4 146 45.2
FAN12G4330 Fragaria x ananassa HOM05D007411 ORTHO05D009025 4.7e-22 109.0 214 35.0
Potri.010G085000 Populus trichocarpa HOM05D007411 ORTHO05D009025 4.7e-22 109.0 154 42.2
ClCG06G006330 Citrullus lanatus HOM05D007411 ORTHO05D009025 8.0e-22 108.2 173 37.0
PGR004G0639 Punica granatum HOM05D007411 ORTHO05D009025 8.0e-22 108.2 169 39.6
arahy.Tifrunner.gnm1.ann1.UE7NK8 Arachis hypogaea HOM05D007411 ORTHO05D009025 1.8e-21 107.1 146 44.5
Duzib151G0508 Durio zibethinus HOM05D007411 ORTHO05D009025 1.8e-21 107.1 125 44.8
Atru.chr4.2432 Acer truncatum HOM05D007411 ORTHO05D009025 6.8e-21 105.1 124 46.8
Glyma.01G235100 Glycine max HOM05D007411 ORTHO05D009025 8.9e-21 104.8 100 57.0
Actinidia23528 Actinidia chinensis HOM05D007411 ORTHO05D009025 1.2e-20 104.4 134 43.3
Migut.G00360 Erythranthe guttata HOM05D007411 ORTHO05D009025 1.2e-20 104.4 107 47.7
MELO3C012663.2 Cucumis melo HOM05D007411 ORTHO05D009025 1.5e-20 104.0 153 39.9
CANSAT78G1457 Cannabis sativa HOM05D007411 ORTHO05D009025 2.0e-20 103.6 160 43.8
Cpa.g.sc58.79 Carica papaya HOM05D007411 ORTHO05D009025 3.4e-20 102.8 134 43.3
Hma1.2p1_1572F.1_g291440 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 3.4e-20 102.8 186 36.6
Hma1.2p1_2201F.1_g317040 Hydrangea macrophylla HOM05D007411 ORTHO05D009025 3.4e-20 102.8 186 36.6
MD16G1196900 Malus domestica HOM05D007411 ORTHO05D009025 3.4e-20 102.8 94 53.2
Ca_24421_v3 Cicer arietinum L. HOM05D007411 ORTHO05D009025 5.7e-20 102.1 126 46.8
LjContig00222g0000468 Lotus japonicus HOM05D007411 ORTHO05D009025 5.7e-20 102.1 100 54.0
CsaV3_7G022390 Cucumis sativus L. HOM05D007411 ORTHO05D009025 9.8e-20 101.3 113 46.0
Sopen09g031190 Solanum pennellii HOM05D007411 ORTHO05D009025 9.8e-20 101.3 136 39.0
Nitab4.5_0004062g0070 Nicotiana tabacum HOM05D007411 ORTHO05D009025 1.7e-19 100.5 141 42.6
Sed0024167 Sechium edule HOM05D007411 ORTHO05D009025 2.2e-19 100.1 130 41.5
Solyc09g082310.2 Solanum lycopersicum HOM05D007411 ORTHO05D009025 4.9e-19 99.0 136 38.2
Manes.03G176101 Manihot esculenta HOM05D007411 ORTHO05D009025 6.4e-19 98.6 173 38.7
HanXRQChr05g0131941 Helianthus annuus HOM05D007411 ORTHO05D009025 8.3e-19 98.2 148 37.2
Aqoxy5G00439 Aquilegia oxysepala HOM05D007411 ORTHO05D009025 1.4e-18 97.4 168 41.1
SGA_v2.0_scaffold151G36714 Striga asiatica HOM05D007411 ORTHO05D009025 1.4e-18 97.4 156 39.1
Lsat_1_v5_gn_9_80381 Lactuca sativa HOM05D007411 ORTHO05D009025 1.8e-18 97.1 124 41.9
Peaxi162Scf00092g00336 Petunia axillaris HOM05D007411 ORTHO05D009025 1.8e-18 97.1 91 49.5
Phvul.002G042700 Phaseolus vulgaris HOM05D007411 ORTHO05D009025 1.8e-18 97.1 96 54.2
RcHm_v2.0_Chr4g0415591 Rosa chinensis HOM05D007411 ORTHO05D009025 1.8e-18 97.1 120 44.2
Nitab4.5_0002307g0080 Nicotiana tabacum HOM05D007411 ORTHO05D009025 2.4e-18 96.7 126 42.1
VMungo1215G0970 Vigna mungo HOM05D007411 ORTHO05D009025 2.4e-18 96.7 96 53.1
CSS0014995 Camellia sinensis var. sinensis HOM05D007411 ORTHO05D009025 4.1e-18 95.9 101 48.5
Psat2g190000 Pisum sativum HOM05D007411 ORTHO05D009025 9.2e-18 94.7 170 40.0
Nn6g34119 Nelumbo nucifera HOM05D007411 ORTHO05D009025 1.2e-17 94.4 166 38.6
Thecc.04G235100 Theobroma cacao HOM05D007411 ORTHO05D009025 1.2e-17 94.4 131 43.5
COL.COLO4_21515 Corchorus olitorius HOM05D007411 ORTHO05D009025 2.7e-17 93.2 109 45.0
SalBow2G3064 Salvia bowleyana HOM05D007411 ORTHO05D009025 2.7e-17 93.2 167 36.5
Medtr2g049980 Medicago truncatula HOM05D007411 ORTHO05D009025 5.9e-17 92.0 119 47.1
CAN.G1094.25 Capsicum annuum HOM05D007411 ORTHO05D009025 1.3e-16 90.9 144 37.5
Medtr5g006900 Medicago truncatula HOM05D007411 ORTHO05D009025 1.3e-16 90.9 119 46.2
DCAR_027228 Daucus carota HOM05D002080 ORTHO05D002062 2.3e-16 90.1 96 43.8
Sc13g0004560 Simmondsia chinensis HOM05D007411 ORTHO05D009025 5.0e-16 89.0 168 36.9
TAR633G2267 Trochodendron aralioides HOM05D007411 ORTHO05D009025 1.1e-15 87.8 110 44.5
RcHm_v2.0_Chr4g0391821 Rosa chinensis HOM05D007411 ORTHO05D009025 4.3e-15 85.9 128 39.1
CDE05G0749 Ceratophyllum demersum HOM05D007411 ORTHO05D009025 3.6e-14 82.8 154 37.0
MBI11_g32995_MAGBIO Magnolia biondii HOM05D007411 ORTHO05D009025 4.7e-14 82.4 131 41.2
Psat7g023320 Pisum sativum HOM05D007411 ORTHO05D009025 4.7e-14 82.4 97 48.5
LjContig00222g0003473 Lotus japonicus HOM05D007411 ORTHO05D009025 6.2e-14 82.0 130 43.1
PSO210G5563 Papaver somniferum HOM05D007411 ORTHO05D009025 8.0e-14 81.6 117 38.5
Lalb_Chr05g0211151 Lupinus albus HOM05D007411 ORTHO05D009025 1.0e-13 81.3 97 47.4
PSO832G1886 Papaver somniferum HOM05D007411 ORTHO05D009025 4.0e-13 79.3 140 36.4
Eucgr.H03438 Eucalyptus grandis HOM05D007411 ORTHO05D009025 6.8e-13 78.6 132 36.4
Potri.008G155300 Populus trichocarpa HOM05D007411 ORTHO05D009025 1.2e-12 77.8 125 40.8
TPR.G3913 Trifolium pratense HOM05D007411 ORTHO05D009025 4.4e-12 75.9 86 50.0
Os01g0607100 Oryza sativa ssp. japonica HOM05D032292 ORTHO05D009025 3.9e-08 62.8 93 36.6
PSO724G0575 Papaver somniferum HOM05D007411 ORTHO05D009025 3.9e-08 62.8 75 38.7
TAR633G1834 Trochodendron aralioides HOM05D007411 ORTHO05D009025 7.3e-07 58.5 92 40.2
TAR633G0575 Trochodendron aralioides HOM05D007411 ORTHO05D009025 1.2e-06 57.8 84 38.1
FvH4_3g08061 Fragaria vesca HOM05D007411 ORTHO05D009025 2.1e-06 57.0 63 46.0
ClCG06G014900 Citrullus lanatus HOM05D001204 ORTHO05D009253 2.8e-06 56.6 134 29.1


User provided reference genes

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