Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G14720 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 8.7e-182 640.2 328 100.0
Carub.0007s2745 Capsella rubella HOM05D004643 ORTHO05D005535 1.8e-150 536.2 315 88.6
Sp7g12820 Schrenkiella parvula HOM05D004643 ORTHO05D005535 7.0e-147 524.2 319 87.1
AL7G41240 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 4.5e-146 521.5 313 87.9
Thhalv10025735m.g Eutrema salsugineum HOM05D004643 ORTHO05D005535 1.9e-144 516.2 321 87.2
CARHR221190 Cardamine hirsuta HOM05D004643 ORTHO05D005535 1.3e-140 503.4 317 85.8
AL7G41265 Arabidopsis lyrata HOM05D004643 ORTHO05D005535 1.4e-134 483.4 312 82.7
A01p22960 Brassica napus HOM05D004643 ORTHO05D005535 1.5e-133 479.9 320 80.6
BraA01t02209Z Brassica rapa HOM05D004643 ORTHO05D005535 3.7e-132 475.3 321 80.4
Carub.0007s2747 Capsella rubella HOM05D004643 ORTHO05D005535 2.4e-131 472.6 312 81.7
C01p28440 Brassica napus HOM05D004643 ORTHO05D005535 4.6e-130 468.4 320 78.8
BolC1t02783H Brassica oleracea HOM05D004643 ORTHO05D005535 1.5e-128 463.4 321 78.5
BcaNung00344 Brassica carinata HOM05D004643 ORTHO05D005535 2.8e-127 459.1 318 78.3
BcaC09g50142 Brassica carinata HOM05D004643 ORTHO05D005535 6.2e-127 458.0 317 78.5
BcaB04g18255 Brassica carinata HOM05D004643 ORTHO05D005535 4.7e-119 431.8 318 77.4
BolC8t48230H Brassica oleracea HOM05D004643 ORTHO05D005535 6.2e-119 431.4 326 76.1
BraA08t33131Z Brassica rapa HOM05D004643 ORTHO05D005535 5.8e-117 424.9 320 76.2
A08p11380 Brassica napus HOM05D004643 ORTHO05D005535 2.2e-116 422.9 327 75.5
BcaC07g37843 Brassica carinata HOM05D004643 ORTHO05D005535 1.2e-114 417.2 352 70.5
AT4G14713 Arabidopsis thaliana HOM05D004643 ORTHO05D005535 3.5e-106 389.0 228 86.4
Aa31LG9G2640 Aethionema arabicum HOM05D004643 ORTHO05D005535 4.0e-102 375.6 357 61.6
THA.LOC104803050 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 1.6e-98 363.6 334 64.1
THA.LOC104808573 Tarenaya hassleriana HOM05D004643 ORTHO05D005535 2.4e-91 339.7 350 57.7
CARHR221170 Cardamine hirsuta HOM05D004643 ORTHO05D005535 2.3e-73 280.0 309 57.9
Thecc.04G238200 Theobroma cacao HOM05D004643 ORTHO05D005535 4.6e-66 255.8 350 47.4
Haze_11230 Corylus avellana HOM05D004643 ORTHO05D005535 3.9e-65 252.7 342 47.1
GSVIVG01018038001 Vitis vinifera HOM05D004643 ORTHO05D005535 2.4e-62 243.4 327 48.6
Cpa.g.sc44.119 Carica papaya HOM05D004643 ORTHO05D005535 4.1e-62 242.7 305 49.5
Prupe.1G020900 Prunus persica HOM05D004643 ORTHO05D005535 4.1e-62 242.7 337 46.9
CiPaw.02G121300 Carya illinoinensis HOM05D004643 ORTHO05D005535 5.3e-62 242.3 334 48.2
CsaV3_2G013410 Cucumis sativus L. HOM05D004643 ORTHO05D005535 5.3e-62 242.3 342 46.5
Ciclev10005357m.g Citrus clementina HOM05D004643 ORTHO05D005535 2.0e-61 240.4 347 46.4
Duzib151G1159 Durio zibethinus HOM05D004643 ORTHO05D005535 3.4e-61 239.6 354 46.3
Manes.15G032500 Manihot esculenta HOM05D004643 ORTHO05D005535 5.9e-61 238.8 344 45.3
Sed0027490 Sechium edule HOM05D004643 ORTHO05D005535 5.9e-61 238.8 341 46.6
MD16G1199200 Malus domestica HOM05D004643 ORTHO05D005535 2.9e-60 236.5 347 47.3
MD13G1199500 Malus domestica HOM05D004643 ORTHO05D005535 3.2e-59 233.0 350 46.3
QL06p001136 Quercus lobata HOM05D004643 ORTHO05D005535 3.2e-59 233.0 364 45.1
ClCG06G006490 Citrullus lanatus HOM05D004643 ORTHO05D005535 7.2e-59 231.9 321 47.0
Sed0024780 Sechium edule HOM05D004643 ORTHO05D005535 6.7e-57 225.3 274 50.4
CANSAT78G2233 Cannabis sativa HOM05D004643 ORTHO05D005535 4.4e-56 222.6 332 46.1
TAR362G0460 Trochodendron aralioides HOM05D004643 ORTHO05D005535 3.1e-54 216.5 343 43.7
Nn6g34159 Nelumbo nucifera HOM05D004643 ORTHO05D005535 1.5e-53 214.2 347 43.2
COL.COLO4_21561 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.3e-52 211.1 305 45.9
RcHm_v2.0_Chr4g0387691 Rosa chinensis HOM05D004643 ORTHO05D005535 1.3e-52 211.1 339 43.7
TWI53G0950 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 3.8e-52 209.5 332 44.3
Gorai.011G168900 Gossypium raimondii HOM05D004643 ORTHO05D005535 5.0e-52 209.1 370 44.3
Atru.chr4.2372 Acer truncatum HOM05D004643 ORTHO05D005535 6.5e-52 208.8 341 42.8
Eucgr.H03414 Eucalyptus grandis HOM05D004643 ORTHO05D005535 8.5e-52 208.4 283 48.1
Lj5g0008364 Lotus japonicus HOM05D004643 ORTHO05D005535 1.9e-51 207.2 335 43.0
Atru.chr4.2396 Acer truncatum HOM05D004643 ORTHO05D005535 2.5e-51 206.8 341 42.5
MBI11_g22675_MAGBIO Magnolia biondii HOM05D004643 ORTHO05D005535 9.4e-51 204.9 356 42.4
Gohir.D10G151600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.2e-50 204.5 370 44.1
Manes.03G173500 Manihot esculenta HOM05D004643 ORTHO05D005535 2.7e-50 203.4 274 47.4
VMungo0720G0668 Vigna mungo HOM05D004643 ORTHO05D005535 3.6e-50 203.0 341 42.2
PGR004G2239 Punica granatum HOM05D004643 ORTHO05D005535 6.1e-50 202.2 341 40.5
Gohir.A10G113842 Gossypium hirsutum HOM05D004643 ORTHO05D005535 7.9e-50 201.8 371 43.4
Phvul.007G061400 Phaseolus vulgaris HOM05D004643 ORTHO05D005535 1.0e-49 201.4 321 43.0
FAN12G4007 Fragaria x ananassa HOM05D004643 ORTHO05D005535 2.3e-49 200.3 337 42.4
FvH4_4g01120 Fragaria vesca HOM05D004643 ORTHO05D005535 1.1e-48 198.0 337 42.1
Dinv22507 Davidia involucrata HOM05D004643 ORTHO05D005535 4.4e-48 196.1 345 42.9
AUR62034685 Chenopodium quinoa HOM05D004643 ORTHO05D005535 7.4e-48 195.3 346 41.3
TPR.G26097 Trifolium pratense HOM05D004643 ORTHO05D005535 7.4e-48 195.3 344 41.0
MELO3C014283.2 Cucumis melo HOM05D004643 ORTHO05D005535 9.7e-48 194.9 323 41.8
Nn1g02445 Nelumbo nucifera HOM05D004643 ORTHO05D005535 9.7e-48 194.9 279 47.0
Glyma.10G244400 Glycine max HOM05D004643 ORTHO05D005535 1.3e-47 194.5 345 42.3
Medtr1g102900 Medicago truncatula HOM05D004643 ORTHO05D005535 1.3e-47 194.5 354 41.0
Glyma.20G150000 Glycine max HOM05D004643 ORTHO05D005535 1.7e-47 194.1 326 42.3
Psat6g204360 Pisum sativum HOM05D004643 ORTHO05D005535 1.7e-47 194.1 284 44.7
Ca_10855_v3 Cicer arietinum L. HOM05D004643 ORTHO05D005535 4.8e-47 192.6 337 42.4
FAN22G0811 Fragaria x ananassa HOM05D002305 ORTHO05D002528 4.8e-47 192.6 269 45.7
Hma1.2p1_0172F.1_g075970 Hydrangea macrophylla HOM05D004643 ORTHO05D005535 4.8e-47 192.6 347 40.1
Actinidia19959 Actinidia chinensis HOM05D004643 ORTHO05D005535 1.1e-46 191.4 350 42.3
Ciclev10021137m.g Citrus clementina HOM05D004643 ORTHO05D005535 1.1e-46 191.4 294 42.9
CSS0031620 Camellia sinensis var. sinensis HOM05D004643 ORTHO05D005535 1.4e-46 191.0 350 40.0
FAN17G1992 Fragaria x ananassa HOM05D002305 ORTHO05D002528 1.4e-46 191.0 271 45.4
AUR62024080 Chenopodium quinoa HOM05D004643 ORTHO05D005535 1.8e-46 190.7 318 44.0
TAR636G3033 Trochodendron aralioides HOM05D004643 ORTHO05D005535 4.1e-46 189.5 361 40.2
Gorai.004G077100 Gossypium raimondii HOM05D004643 ORTHO05D005535 7.7e-45 185.3 339 38.3
PSO170G0554 Papaver somniferum HOM05D004643 ORTHO05D005535 1.0e-44 184.9 296 42.2
Lalb_Chr21g0304771 Lupinus albus HOM05D004643 ORTHO05D005535 2.2e-44 183.7 326 41.7
Aqoxy5G00405 Aquilegia oxysepala HOM05D004643 ORTHO05D005535 3.8e-44 183.0 363 38.0
MSTRG.21530 Avicennia marina HOM05D004643 ORTHO05D005535 5.0e-44 182.6 344 39.5
Gorai.008G002400 Gossypium raimondii HOM05D004643 ORTHO05D005535 1.1e-43 181.4 342 40.4
Atru.chr5.1514 Acer truncatum HOM05D004643 ORTHO05D005535 1.5e-43 181.0 339 41.0
GSVIVG01003113001 Vitis vinifera HOM05D004643 ORTHO05D005535 2.5e-43 180.3 343 40.5
Duzib133G1145 Durio zibethinus HOM05D004643 ORTHO05D005535 4.2e-43 179.5 272 42.3
Potri.002G048500 Populus trichocarpa HOM05D004643 ORTHO05D005535 5.5e-43 179.1 347 38.3
PSO210G1486 Papaver somniferum HOM05D004643 ORTHO05D005535 9.4e-43 178.3 294 42.2
Potri.005G214300 Populus trichocarpa HOM05D004643 ORTHO05D005535 9.4e-43 178.3 354 38.1
Gohir.A12G002900 Gossypium hirsutum HOM05D004643 ORTHO05D005535 1.6e-42 177.6 344 39.5
Lsat_1_v5_gn_5_185821 Lactuca sativa HOM05D004643 ORTHO05D005535 6.1e-42 175.6 279 42.3
Actinidia09108 Actinidia chinensis HOM05D004643 ORTHO05D005535 3.0e-41 173.3 355 39.4
Duzib138G1309 Durio zibethinus HOM05D004643 ORTHO05D005535 3.0e-41 173.3 298 41.6
Thecc.01G272300 Theobroma cacao HOM05D004643 ORTHO05D005535 4.0e-41 172.9 297 40.7
CAN.G380.10 Capsicum annuum HOM05D004643 ORTHO05D005535 8.8e-41 171.8 310 39.4
Dinv32890 Davidia involucrata HOM05D004643 ORTHO05D005535 8.8e-41 171.8 193 51.8
Migut.N02031 Erythranthe guttata HOM05D004643 ORTHO05D005535 8.8e-41 171.8 322 39.4
SalBow4G2540 Salvia bowleyana HOM05D004643 ORTHO05D005535 8.8e-41 171.8 277 43.0
Solyc09g065630.3 Solanum lycopersicum HOM05D004643 ORTHO05D005535 8.8e-41 171.8 347 37.8
Gohir.D12G002600 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.0e-40 170.6 338 39.3
Sabra05G0163800 Salix brachista HOM05D004643 ORTHO05D005535 2.0e-40 170.6 303 38.9
Migut.O00727 Erythranthe guttata HOM05D004643 ORTHO05D005535 4.4e-40 169.5 317 39.4
DCAR_002706 Daucus carota HOM05D004643 ORTHO05D005535 7.5e-40 168.7 319 41.1
Gohir.A08G064300 Gossypium hirsutum HOM05D004643 ORTHO05D005535 7.5e-40 168.7 274 41.2
Cc01_g19060 Coffea canephora HOM05D004643 ORTHO05D005535 1.3e-39 167.9 351 36.8
Sopen09g027380 Solanum pennellii HOM05D004643 ORTHO05D005535 2.2e-39 167.2 348 37.6
Duzib211G0433 Durio zibethinus HOM05D004643 ORTHO05D005535 2.8e-39 166.8 296 39.2
TWI73G0832 Tripterygium wilfordii HOM05D004643 ORTHO05D005535 4.8e-39 166.0 211 48.3
SGA_v2.0_scaffold138G35301 Striga asiatica HOM05D004643 ORTHO05D005535 6.3e-39 165.6 294 38.8
HanXRQChr01g0005571 Helianthus annuus HOM05D004643 ORTHO05D005535 3.1e-38 163.3 303 38.6
SGA_v2.0_scaffold1G00527 Striga asiatica HOM05D004643 ORTHO05D005535 4.1e-38 162.9 269 40.5
unitig_0.g136 Utricularia gibba HOM05D004643 ORTHO05D005535 4.1e-38 162.9 299 38.8
MSTRG.18264 Avicennia marina HOM05D004643 ORTHO05D005535 3.5e-37 159.8 189 48.1
ECA248G3352 Erigeron canadensis HOM05D004643 ORTHO05D005535 3.5e-37 159.8 306 37.9
Nitab4.5_0015056g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 3.5e-37 159.8 271 42.1
PGSC0003DMG401020059 Solanum tuberosum HOM05D004643 ORTHO05D005535 4.5e-37 159.5 341 37.0
Solyc06g084120.4 Solanum lycopersicum HOM05D004643 ORTHO05D005535 1.3e-36 157.9 327 37.3
HanXRQChr11g0338851 Helianthus annuus HOM05D004643 ORTHO05D005535 1.7e-36 157.5 283 40.6
Nitab4.5_0001044g0010 Nicotiana tabacum HOM05D004643 ORTHO05D005535 1.7e-36 157.5 346 36.4
PGSC0003DMG400019346 Solanum tuberosum HOM05D004643 ORTHO05D005535 3.8e-36 156.4 347 36.0
Rhsim13G0028400 Rhododendron simsii HOM05D004643 ORTHO05D005535 1.5e-35 154.5 403 34.7
Peaxi162Scf00230g00029 Petunia axillaris HOM05D004643 ORTHO05D005535 4.2e-35 152.9 314 35.0
CAN.G771.7 Capsicum annuum HOM05D004643 ORTHO05D005535 1.6e-34 151.0 349 35.8
Sopen06g035500 Solanum pennellii HOM05D004643 ORTHO05D005535 4.7e-34 149.4 268 40.3
CDE10G0665 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 6.1e-34 149.1 281 38.8
EL10Ac3g06512 Beta vulgaris HOM05D004643 ORTHO05D005535 1.4e-33 147.9 190 45.3
Manes.05G081400 Manihot esculenta HOM05D004643 ORTHO05D005535 4.0e-33 146.4 188 46.3
Lsat_1_v5_gn_8_94021 Lactuca sativa HOM05D004643 ORTHO05D005535 8.8e-33 145.2 321 36.8
Nitab4.5_0000252g0230 Nicotiana tabacum HOM05D004643 ORTHO05D005535 8.8e-33 145.2 273 35.9
Ah.00g000940 Amaranthus hybridus HOM05D004643 ORTHO05D005535 2.2e-31 140.6 202 44.6
Nitab4.5_0000871g0020 Nicotiana tabacum HOM05D004643 ORTHO05D005535 2.2e-31 140.6 325 32.6
HPP92_023542 Vanilla planifolia HOM05D004643 ORTHO05D005535 2.8e-31 140.2 355 36.6
CDE10G0709 Ceratophyllum demersum HOM05D004643 ORTHO05D005535 1.6e-29 134.4 296 36.8
Sabra02G0039600 Salix brachista HOM05D004643 ORTHO05D005535 5.0e-28 129.4 330 34.2
CiPaw.01G195600 Carya illinoinensis HOM05D004643 ORTHO05D005535 6.5e-28 129.0 234 41.5
Gohir.D08G072800 Gossypium hirsutum HOM05D004643 ORTHO05D005535 2.5e-27 127.1 317 33.8
Lj2C1166G12 Lonicera japonica HOM05D004643 ORTHO05D005535 4.7e-26 122.9 345 33.0
SHI00517 Sapria himalayana HOM05D004643 ORTHO05D005535 6.8e-25 119.0 294 31.0
ATR0665G494 Amborella trichopoda HOM05D004643 ORTHO05D005535 5.7e-24 115.9 292 33.6
Sc13g0004740 Simmondsia chinensis HOM05D004643 ORTHO05D005535 7.5e-24 115.5 194 40.2
SEGI_27968 Sequoiadendron giganteum HOM05D004643 ORTHO05D005535 2.8e-23 113.6 320 34.4
SMO356G0236 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 1.6e-21 107.8 178 41.0
unitig_60.g25785 Utricularia gibba HOM05D004643 ORTHO05D005535 3.5e-21 106.7 278 33.8
BcaC07g37844 Brassica carinata HOM05D004643 ORTHO05D005535 4.5e-21 106.3 97 69.1
Ah.11g047360 Amaranthus hybridus HOM05D004643 ORTHO05D005535 1.7e-20 104.4 122 49.2
TAR365G0093 Trochodendron aralioides HOM05D001497 ORTHO05D001707 3.8e-20 103.2 206 38.8
SMO348G0038 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 4.3e-19 99.8 240 32.9
Hund22704 Selenicereus undatus HOM05D004643 ORTHO05D005535 2.8e-18 97.1 84 59.5
SMO153G0002 Selaginella moellendorffii HOM05D004643 ORTHO05D005535 8.0e-18 95.5 243 31.7
Oeu047217.1 Olea europaea HOM05D004643 ORTHO05D005535 5.2e-17 92.8 101 52.5
Peaxi162Scf00608g00922 Petunia axillaris HOM05D004643 ORTHO05D005535 6.8e-17 92.4 165 40.6
Oeu047218.1 Olea europaea HOM05D004643 ORTHO05D005535 4.6e-13 79.7 151 35.1
CBR_g49108 Chara braunii HOM05D000004 ORTHO05D038404 1.9e-11 74.3 56 62.5
vmacro02609 Vaccinium macrocarpon HOM05D004643 ORTHO05D005535 4.3e-11 73.2 192 33.9
COL.COLO4_09197 Corchorus olitorius HOM05D004643 ORTHO05D005535 1.0e-09 68.6 118 40.7
MBI13_g09073_MAGBIO Magnolia biondii HOM05D001047 ORTHO05D000768 2.6e-08 63.9 135 35.6
PGR142G0155 Punica granatum HOM05D001047 ORTHO05D000768 5.8e-08 62.8 189 30.7
PSO386G0059 Papaver somniferum HOM05D001047 ORTHO05D000768 1.3e-07 61.6 144 31.9
PSO724G1109 Papaver somniferum HOM05D001047 ORTHO05D000768 2.9e-07 60.5 144 31.2
CDE04G1925 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 4.9e-07 59.7 127 33.1
SEGI_02697 Sequoiadendron giganteum HOM05D001047 ORTHO05D000768 8.3e-07 58.9 111 39.6
arahy.Tifrunner.gnm1.ann1.76C240 Arachis hypogaea HOM05D001047 ORTHO05D000768 1.1e-06 58.5 160 31.2
Atru.chr7.1808 Acer truncatum HOM05D001047 ORTHO05D000768 1.4e-06 58.2 238 29.0
Pp3c6_23650 Physcomitrium patens HOM05D002346 ORTHO05D002452 1.4e-06 58.2 120 36.7
QL05p003803 Quercus lobata HOM05D001047 ORTHO05D000768 1.4e-06 58.2 124 34.7
ATR0006G052 Amborella trichopoda HOM05D001047 ORTHO05D000768 1.9e-06 57.8 160 29.4
SEGI_14779 Sequoiadendron giganteum HOM05D001047 ORTHO05D000768 1.9e-06 57.8 112 39.3
Manes.03G055200 Manihot esculenta HOM05D001047 ORTHO05D000768 3.2e-06 57.0 179 30.7
Nitab4.5_0004234g0080 Nicotiana tabacum HOM05D001047 ORTHO05D000768 3.2e-06 57.0 139 35.3
CDE06G2286 Ceratophyllum demersum HOM05D001047 ORTHO05D000768 4.1e-06 56.6 134 35.1
VMungo0331G1097 Vigna mungo HOM05D001047 ORTHO05D000768 4.1e-06 56.6 113 36.3
Os03g0402800 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 5.4e-06 56.2 127 34.6
Actinidia32203 Actinidia chinensis HOM05D001047 ORTHO05D000768 7.0e-06 55.8 151 33.1
AUR62028298 Chenopodium quinoa HOM05D001047 ORTHO05D000768 7.0e-06 55.8 162 27.8
Lsat_1_v5_gn_4_91521 Lactuca sativa HOM05D001047 ORTHO05D000768 7.0e-06 55.8 109 37.6
Nitab4.5_0007295g0020 Nicotiana tabacum HOM05D001047 ORTHO05D000768 7.0e-06 55.8 112 35.7
Sabra03G0040400 Salix brachista HOM05D001047 ORTHO05D000768 7.0e-06 55.8 132 34.1
CBR_g25753 Chara braunii HOM05D003995 ORTHO05D004800 9.2e-06 55.5 61 42.6
Os07g0615200 Oryza sativa ssp. japonica HOM05D001047 ORTHO05D000768 9.2e-06 55.5 125 33.6


User provided reference genes

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