Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G14380 Arabidopsis thaliana HOM05D007526 ORTHO05D009350 8.5e-79 297.4 201 100.0
AL7G41840 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 1.1e-73 280.4 202 79.7
CARHR220600 Cardamine hirsuta HOM05D007526 ORTHO05D009350 1.1e-62 243.8 202 70.8
BraA04t16457Z Brassica rapa HOM05D007526 ORTHO05D009350 4.2e-62 241.9 202 69.3
A04p07660 Brassica napus HOM05D007526 ORTHO05D009350 6.1e-61 238.0 206 69.4
Carub.0007s2786 Capsella rubella HOM05D007526 ORTHO05D009350 1.4e-60 236.9 225 75.1
C04p41350 Brassica napus HOM05D007526 ORTHO05D009350 3.0e-60 235.7 206 69.4
BcaC02g09320 Brassica carinata HOM05D007526 ORTHO05D009350 2.6e-59 232.6 206 68.4
BolC4t25713H Brassica oleracea HOM05D007526 ORTHO05D009350 2.6e-59 232.6 206 68.4
BcaB02g08612 Brassica carinata HOM05D007526 ORTHO05D009350 9.8e-59 230.7 209 67.9
Sp7g12460 Schrenkiella parvula HOM05D007526 ORTHO05D009350 9.8e-59 230.7 203 71.4
Thhalv10026764m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 1.7e-58 229.9 204 66.7
Thhalv10022185m.g Eutrema salsugineum HOM05D007526 ORTHO05D009350 1.2e-37 160.6 211 52.1
Sp3g20910 Schrenkiella parvula HOM05D007526 ORTHO05D009350 3.1e-36 156.0 198 49.5
THA.LOC104808623 Tarenaya hassleriana HOM05D007526 ORTHO05D009350 6.8e-36 154.8 201 53.2
Aa31LG9G2940 Aethionema arabicum HOM05D007526 ORTHO05D009350 7.5e-35 151.4 181 50.8
BolC7t41918H Brassica oleracea HOM05D007526 ORTHO05D009350 6.4e-34 148.3 201 47.3
A07p09230 Brassica napus HOM05D007526 ORTHO05D009350 9.2e-33 144.4 196 46.9
C07p14270 Brassica napus HOM05D007526 ORTHO05D009350 9.2e-33 144.4 196 46.4
CARHR099230 Cardamine hirsuta HOM05D007526 ORTHO05D009350 5.6e-30 135.2 214 43.5
BraA07t28719Z Brassica rapa HOM05D007526 ORTHO05D009350 2.2e-26 123.2 181 44.8
Gohir.A09G229800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 2.0e-19 100.1 215 36.7
Ciclev10005975m.g Citrus clementina HOM05D007526 ORTHO05D009350 2.6e-19 99.8 196 34.7
Gorai.006G253500 Gossypium raimondii HOM05D007526 ORTHO05D009350 3.4e-19 99.4 215 36.7
AL3G37924 Arabidopsis lyrata HOM05D007526 ORTHO05D009350 2.4e-17 93.2 61 77.0
Atru.chr4.2058 Acer truncatum HOM05D007526 ORTHO05D009350 3.2e-17 92.8 192 33.3
Duzib151G1045 Durio zibethinus HOM05D007526 ORTHO05D009350 4.2e-17 92.4 210 33.3
Duzib212G0007 Durio zibethinus HOM05D007526 ORTHO05D009350 4.2e-17 92.4 209 33.0
FvH4_4g03670 Fragaria vesca HOM05D007526 ORTHO05D009350 1.0e-15 87.8 200 36.0
RcHm_v2.0_Chr4g0393211 Rosa chinensis HOM05D007526 ORTHO05D009350 1.7e-15 87.0 200 34.5
Cpa.g.sc44.57 Carica papaya HOM05D007526 ORTHO05D009350 2.3e-15 86.7 209 30.1
FAN12G2381 Fragaria x ananassa HOM05D007526 ORTHO05D009350 2.3e-15 86.7 200 36.0
Thecc.04G255400 Theobroma cacao HOM05D007526 ORTHO05D009350 2.3e-15 86.7 212 34.0
Potri.008G167200 Populus trichocarpa HOM05D007526 ORTHO05D009350 5.1e-15 85.5 209 34.4
CsaV3_3G012050 Cucumis sativus L. HOM05D007526 ORTHO05D009350 3.3e-14 82.8 208 33.7
Haze_11381 Corylus avellana HOM05D007526 ORTHO05D009350 5.6e-14 82.0 198 34.3
QL06p017957 Quercus lobata HOM05D007526 ORTHO05D009350 5.6e-14 82.0 197 33.5
MELO3C006420.2 Cucumis melo HOM05D007526 ORTHO05D009350 9.6e-14 81.3 205 32.7
FAN17G0331 Fragaria x ananassa HOM05D007526 ORTHO05D009350 9.6e-14 81.3 200 33.5
Sabra08G0127400 Salix brachista HOM05D007526 ORTHO05D009350 9.6e-14 81.3 184 33.7
Cfa022958 Carpinus fangiana HOM05D007526 ORTHO05D009350 2.1e-13 80.1 198 32.3
Lalb_Chr19g0128211 Lupinus albus HOM05D007526 ORTHO05D009350 2.8e-13 79.7 204 28.9
TPR.G25185 Trifolium pratense HOM05D007526 ORTHO05D009350 3.6e-13 79.3 206 30.1
Glyma.10G181000 Glycine max HOM05D007526 ORTHO05D009350 4.8e-13 79.0 202 30.7
Glyma.20G209500 Glycine max HOM05D007526 ORTHO05D009350 1.4e-12 77.4 201 30.8
Glyma.10G006400 Glycine max HOM05D007526 ORTHO05D009350 6.9e-12 75.1 221 30.8
QL06p018008 Quercus lobata HOM05D007526 ORTHO05D009350 6.9e-12 75.1 53 71.7
Manes.03G164000 Manihot esculenta HOM05D007526 ORTHO05D009350 1.5e-11 73.9 207 30.0
Lj6g0011756 Lotus japonicus HOM05D007526 ORTHO05D009350 2.0e-11 73.6 207 28.5
Glyma.02G005400 Glycine max HOM05D007526 ORTHO05D009350 2.6e-11 73.2 211 28.9
MD16G1219200 Malus domestica HOM05D007526 ORTHO05D009350 2.6e-11 73.2 212 30.7
Medtr1g042820 Medicago truncatula HOM05D007526 ORTHO05D009350 2.6e-11 73.2 214 27.1
VMungo0720G1630 Vigna mungo HOM05D007526 ORTHO05D009350 2.6e-11 73.2 207 31.4
PGR004G2347 Punica granatum HOM05D007526 ORTHO05D009350 3.4e-11 72.8 209 31.1
Prupe.1G039600 Prunus persica HOM05D007526 ORTHO05D009350 5.8e-11 72.0 212 30.7
Psat6g104840 Pisum sativum HOM05D007526 ORTHO05D009350 7.6e-11 71.6 202 29.2
COL.COLO4_15878 Corchorus olitorius HOM05D007526 ORTHO05D009350 1.3e-10 70.9 53 67.9
Phvul.007G108400 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 1.3e-10 70.9 207 31.9
arahy.Tifrunner.gnm1.ann1.582VFN Arachis hypogaea HOM05D007526 ORTHO05D009350 2.2e-10 70.1 205 30.2
arahy.Tifrunner.gnm1.ann1.STCN49 Arachis hypogaea HOM05D007526 ORTHO05D009350 2.2e-10 70.1 205 29.3
MD13G1214200 Malus domestica HOM05D007526 ORTHO05D009350 2.9e-10 69.7 211 29.9
Sed0008521 Sechium edule HOM05D007526 ORTHO05D009350 3.8e-10 69.3 209 30.1
TPR.G1498 Trifolium pratense HOM05D007526 ORTHO05D009350 3.8e-10 69.3 57 59.6
TWI09G0237 Tripterygium wilfordii HOM05D007526 ORTHO05D009350 6.4e-10 68.6 205 31.2
VMungo0720G0856 Vigna mungo HOM05D007526 ORTHO05D009350 8.4e-10 68.2 54 63.0
CiPaw.01G184600 Carya illinoinensis HOM05D007526 ORTHO05D009350 1.1e-09 67.8 198 36.9
Eucgr.H03043 Eucalyptus grandis HOM05D007526 ORTHO05D009350 1.1e-09 67.8 195 29.7
Manes.15G040900 Manihot esculenta HOM05D007526 ORTHO05D009350 1.1e-09 67.8 207 30.4
Phvul.007G273600 Phaseolus vulgaris HOM05D007526 ORTHO05D009350 1.1e-09 67.8 52 65.4
CANSAT78G2320 Cannabis sativa HOM05D007526 ORTHO05D009350 1.4e-09 67.4 54 68.5
Medtr1g076110 Medicago truncatula HOM05D007526 ORTHO05D009350 1.2e-08 64.3 54 57.4
Lj5g0022077 Lotus japonicus HOM05D007526 ORTHO05D009350 2.7e-08 63.2 215 27.9
DCAR_027319 Daucus carota HOM05D007526 ORTHO05D009350 3.9e-07 59.3 211 24.6
Glyma.10G180900 Glycine max HOM05D007526 ORTHO05D009350 6.7e-07 58.5 202 36.6
Glyma.20G209600 Glycine max HOM05D007526 ORTHO05D009350 6.7e-07 58.5 200 27.5
CSS0033898 Camellia sinensis var. sinensis HOM05D007526 ORTHO05D009350 1.1e-06 57.8 207 27.1
Gohir.D09G230800 Gossypium hirsutum HOM05D007526 ORTHO05D009350 1.9e-06 57.0 178 28.7


User provided reference genes

Program Settings