Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G14310 Arabidopsis thaliana HOM05D005408 ORTHO05D006790 0.0e+00 1729.5 894 100.0
AL7G41950 Arabidopsis lyrata HOM05D005408 ORTHO05D006790 0.0e+00 1589.3 902 92.4
Carub.0007s2798 Capsella rubella HOM05D005408 ORTHO05D006790 0.0e+00 1567.0 905 90.4
CARHR220500 Cardamine hirsuta HOM05D005408 ORTHO05D006790 0.0e+00 1501.1 910 87.9
Sp7g12340 Schrenkiella parvula HOM05D005408 ORTHO05D006790 0.0e+00 1409.4 918 82.7
Thhalv10024359m.g Eutrema salsugineum HOM05D005408 ORTHO05D006790 0.0e+00 1370.1 918 80.7
Aa31LG9G3050 Aethionema arabicum HOM05D005408 ORTHO05D006790 0.0e+00 1309.7 922 75.9
BcaNung06103 Brassica carinata HOM05D005408 ORTHO05D006790 0.0e+00 1247.6 906 75.9
A08p24350 Brassica napus HOM05D005408 ORTHO05D006790 0.0e+00 1235.7 905 75.9
BcaC01g00205 Brassica carinata HOM05D005408 ORTHO05D006790 0.0e+00 1231.5 905 75.8
C03p76860 Brassica napus HOM05D005408 ORTHO05D006790 0.0e+00 1229.5 904 75.7
BolC3t19941H Brassica oleracea HOM05D005408 ORTHO05D006790 0.0e+00 1221.5 924 74.2
BraA08t34390Z Brassica rapa HOM05D005408 ORTHO05D006790 0.0e+00 1209.9 931 73.3
THA.LOC104804761 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 0.0e+00 1090.9 919 65.2
THA.LOC104822240 Tarenaya hassleriana HOM05D005408 ORTHO05D006790 1.1e-306 1056.6 942 63.5
Cpa.g.sc44.32 Carica papaya HOM05D005408 ORTHO05D006790 1.6e-265 919.8 950 55.4
Dinv27073 Davidia involucrata HOM05D005408 ORTHO05D006790 1.7e-256 889.8 990 53.3
Duzib151G0888 Durio zibethinus HOM05D005408 ORTHO05D006790 1.1e-255 887.1 935 55.0
Thecc.04G259100 Theobroma cacao HOM05D005408 ORTHO05D006790 3.6e-254 882.1 932 55.4
Ciclev10004264m.g Citrus clementina HOM05D005408 ORTHO05D006790 4.3e-247 858.6 915 53.8
COL.COLO4_15917 Corchorus olitorius HOM05D005408 ORTHO05D006790 5.6e-247 858.2 872 55.3
TWI09G0385 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 2.1e-246 856.3 937 52.6
Dinv29839 Davidia involucrata HOM05D005408 ORTHO05D006790 8.9e-245 850.9 953 53.4
Prupe.1G042300 Prunus persica HOM05D005408 ORTHO05D006790 5.8e-244 848.2 1002 50.7
QL06p019224 Quercus lobata HOM05D005408 ORTHO05D006790 7.5e-244 847.8 933 54.7
CSS0047984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.2e-243 846.3 992 51.3
DCAR_024278 Daucus carota HOM05D005408 ORTHO05D006790 2.2e-243 846.3 946 53.1
Atru.chr4.2004 Acer truncatum HOM05D005408 ORTHO05D006790 2.9e-243 845.9 922 53.5
Potri.010G069200 Populus trichocarpa HOM05D005408 ORTHO05D006790 3.7e-243 845.5 934 52.2
GSVIVG01027854001 Vitis vinifera HOM05D005408 ORTHO05D006790 4.9e-243 845.1 912 53.5
Duzib212G0761 Durio zibethinus HOM05D005408 ORTHO05D006790 3.2e-242 842.4 936 52.7
TWI53G1583 Tripterygium wilfordii HOM05D005408 ORTHO05D006790 9.2e-242 840.9 967 50.8
Manes.15G043200 Manihot esculenta HOM05D005408 ORTHO05D006790 1.2e-241 840.5 943 51.0
Potri.008G169200 Populus trichocarpa HOM05D005408 ORTHO05D006790 1.2e-241 840.5 933 52.5
Actinidia20821 Actinidia chinensis HOM05D005408 ORTHO05D006790 3.0e-240 835.9 985 52.3
MD16G1222000 Malus domestica HOM05D005408 ORTHO05D006790 2.1e-238 829.7 977 52.3
CSS0016984 Camellia sinensis var. sinensis HOM05D005408 ORTHO05D006790 2.8e-238 829.3 969 51.6
Haze_11418 Corylus avellana HOM05D005408 ORTHO05D006790 2.8e-238 829.3 967 51.3
Sabra10G0037900 Salix brachista HOM05D005408 ORTHO05D006790 1.1e-237 827.4 948 52.1
FAN12G0827 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.7e-235 820.1 887 53.2
Cfa014743 Carpinus fangiana HOM05D005408 ORTHO05D006790 4.9e-235 818.5 968 51.0
TAR633G1608 Trochodendron aralioides HOM05D005408 ORTHO05D006790 8.3e-235 817.8 1014 49.7
Gohir.A02G040500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 1.4e-234 817.0 937 51.3
Manes.15G043300 Manihot esculenta HOM05D005408 ORTHO05D006790 2.4e-234 816.2 925 51.4
Gohir.D02G046500 Gossypium hirsutum HOM05D005408 ORTHO05D006790 4.1e-234 815.5 930 51.3
FvH4_4g04020 Fragaria vesca HOM05D005408 ORTHO05D006790 5.4e-234 815.1 879 53.0
MD13G1216600 Malus domestica HOM05D005408 ORTHO05D006790 2.7e-233 812.8 983 50.4
Sabra08G0129000 Salix brachista HOM05D005408 ORTHO05D006790 2.7e-233 812.8 949 51.2
Sopen09g033240 Solanum pennellii HOM05D005408 ORTHO05D006790 3.9e-232 808.9 985 48.9
CiPaw.02G109300 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.1e-231 807.4 950 50.8
FAN17G2537 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.5e-231 807.0 888 52.8
Solyc09g090340.3 Solanum lycopersicum HOM05D005408 ORTHO05D006790 3.6e-230 802.4 974 49.2
RcHm_v2.0_Chr4g0394291 Rosa chinensis HOM05D005408 ORTHO05D006790 8.1e-230 801.2 918 51.6
Rhsim02G0041600 Rhododendron simsii HOM05D005408 ORTHO05D006790 2.3e-229 799.7 837 54.8
CANSAT54G2691 Cannabis sativa HOM05D005408 ORTHO05D006790 1.2e-228 797.3 965 51.2
PGR004G2334 Punica granatum HOM05D005408 ORTHO05D006790 2.0e-228 796.6 945 51.0
Peaxi162Scf00392g00730 Petunia axillaris HOM05D005408 ORTHO05D006790 8.4e-227 791.2 968 48.8
Nn1g02867 Nelumbo nucifera HOM05D005408 ORTHO05D006790 4.1e-226 788.9 1036 47.4
PGSC0003DMG400017212 Solanum tuberosum HOM05D005408 ORTHO05D006790 5.4e-226 788.5 986 48.2
Oeu002940.1 Olea europaea HOM05D005408 ORTHO05D006790 1.6e-225 786.9 930 50.0
ClCG05G004200 Citrullus lanatus HOM05D005408 ORTHO05D006790 4.6e-225 785.4 979 49.1
FAN22G0039 Fragaria x ananassa HOM05D005408 ORTHO05D006790 1.7e-224 783.5 962 48.8
Gorai.005G051300 Gossypium raimondii HOM05D005408 ORTHO05D006790 2.5e-223 779.6 879 51.8
CiPaw.01G181400 Carya illinoinensis HOM05D005408 ORTHO05D006790 1.6e-222 776.9 932 50.5
TAR362G0279 Trochodendron aralioides HOM05D005408 ORTHO05D006790 2.1e-222 776.5 999 48.7
CAN.G220.39 Capsicum annuum HOM05D005408 ORTHO05D006790 8.1e-222 774.6 1011 46.4
EL10Ac3g04981 Beta vulgaris HOM05D005408 ORTHO05D006790 1.1e-221 774.2 950 50.6
MELO3C006406.2 Cucumis melo HOM05D005408 ORTHO05D006790 2.6e-220 769.6 980 47.8
Hma1.2p1_0112F.1_g054305 Hydrangea macrophylla HOM05D005408 ORTHO05D006790 1.3e-219 767.3 720 57.1
SalBow3G0714 Salvia bowleyana HOM05D005408 ORTHO05D006790 2.2e-219 766.5 962 47.9
Cc03_g05790 Coffea canephora HOM05D005408 ORTHO05D006790 3.2e-218 762.7 980 48.6
Lj3A679T38 Lonicera japonica HOM05D005408 ORTHO05D006790 4.2e-218 762.3 998 47.9
vmacro15459 Vaccinium macrocarpon HOM05D005408 ORTHO05D006790 4.2e-218 762.3 828 53.5
CsaV3_3G011930 Cucumis sativus L. HOM05D005408 ORTHO05D006790 9.3e-218 761.1 976 47.4
Eucgr.H03018 Eucalyptus grandis HOM05D005408 ORTHO05D006790 3.5e-217 759.2 949 49.7
Nitab4.5_0000596g0060 Nicotiana tabacum HOM05D005408 ORTHO05D006790 1.3e-216 757.3 1081 44.1
Lalb_Chr03g0037341 Lupinus albus HOM05D005408 ORTHO05D006790 2.3e-216 756.5 938 49.4
Sed0026902 Sechium edule HOM05D005408 ORTHO05D006790 8.7e-216 754.6 943 49.5
Lj3A684T25 Lonicera japonica HOM05D005408 ORTHO05D006790 4.8e-214 748.8 999 47.5
Lj6g0021221 Lotus japonicus HOM05D005408 ORTHO05D006790 4.8e-214 748.8 707 56.3
arahy.Tifrunner.gnm1.ann1.NA4LRU Arachis hypogaea HOM05D005408 ORTHO05D006790 8.1e-214 748.0 935 48.4
PSO832G1937 Papaver somniferum HOM05D005408 ORTHO05D006790 1.4e-213 747.3 995 46.5
Sc19g0003230 Simmondsia chinensis HOM05D005408 ORTHO05D006790 2.4e-213 746.5 944 48.4
Oeu005084.1 Olea europaea HOM05D005408 ORTHO05D006790 3.1e-213 746.1 933 48.2
AUR62015544 Chenopodium quinoa HOM05D005408 ORTHO05D006790 4.0e-213 745.7 936 48.5
Nitab4.5_0000044g0530 Nicotiana tabacum HOM05D005408 ORTHO05D006790 5.3e-213 745.3 1017 45.4
VMungo0720G1073 Vigna mungo HOM05D005408 ORTHO05D006790 6.9e-213 745.0 659 58.6
ECA248G0134 Erigeron canadensis HOM05D005408 ORTHO05D006790 2.6e-212 743.0 893 49.0
arahy.Tifrunner.gnm1.ann1.HQEG75 Arachis hypogaea HOM05D005408 ORTHO05D006790 4.5e-212 742.3 937 48.2
Glyma.10G004700 Glycine max HOM05D005408 ORTHO05D006790 7.6e-212 741.5 654 59.3
PSO210G0343 Papaver somniferum HOM05D005408 ORTHO05D006790 2.9e-211 739.6 998 46.5
Phvul.007G275400 Phaseolus vulgaris HOM05D005408 ORTHO05D006790 3.8e-211 739.2 657 57.8
Migut.N00286 Erythranthe guttata HOM05D005408 ORTHO05D006790 4.9e-211 738.8 971 45.5
Glyma.02G003800 Glycine max HOM05D005408 ORTHO05D006790 4.6e-209 732.3 666 58.7
Hund03055 Selenicereus undatus HOM05D005408 ORTHO05D006790 4.6e-209 732.3 984 46.2
MSTRG.21921 Avicennia marina HOM05D005408 ORTHO05D006790 6.0e-209 731.9 980 46.3
HanXRQChr11g0330791 Helianthus annuus HOM05D005408 ORTHO05D006790 7.9e-209 731.5 961 47.5
MBI07_g31083_MAGBIO Magnolia biondii HOM05D005408 ORTHO05D006790 5.6e-207 725.3 1000 45.2
AUR62002164 Chenopodium quinoa HOM05D005408 ORTHO05D006790 3.6e-206 722.6 920 48.4
Aqoxy5G00183 Aquilegia oxysepala HOM05D005408 ORTHO05D006790 5.3e-205 718.8 1009 45.6
TPR.G25189 Trifolium pratense HOM05D005408 ORTHO05D006790 9.9e-204 714.5 744 53.1
Lsat_1_v5_gn_1_74661 Lactuca sativa HOM05D005408 ORTHO05D006790 1.9e-202 710.3 953 46.5
Psat6g104520 Pisum sativum HOM05D005408 ORTHO05D006790 5.6e-199 698.7 910 46.7
SGA_v2.0_scaffold43G16217 Striga asiatica HOM05D005408 ORTHO05D006790 9.6e-199 698.0 932 47.6
Medtr1g041685 Medicago truncatula HOM05D005408 ORTHO05D006790 8.2e-198 694.9 684 55.1
Ca_03010_v3 Cicer arietinum L. HOM05D005408 ORTHO05D006790 2.2e-195 686.8 741 51.8
Migut.G00502 Erythranthe guttata HOM05D005408 ORTHO05D006790 3.8e-195 686.0 917 47.2
SGA_v2.0_scaffold101G29731 Striga asiatica HOM05D005408 ORTHO05D006790 7.9e-193 678.3 882 46.1
HanXRQChr01g0023201 Helianthus annuus HOM05D005408 ORTHO05D006790 2.3e-192 676.8 928 46.4
Zm00001eb258510 Zea mays HOM05D005408 ORTHO05D006790 5.0e-187 659.1 694 52.3
Zm00001eb191660 Zea mays HOM05D005408 ORTHO05D006790 2.5e-186 656.8 710 51.5
MSTRG.4147 Avicennia marina HOM05D005408 ORTHO05D006790 3.2e-178 629.8 666 50.8
ATR0736G089 Amborella trichopoda HOM05D005408 ORTHO05D006790 1.4e-173 614.4 734 47.4
CDE04G2551 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 3.8e-163 579.7 779 45.6
CDE07G1006 Ceratophyllum demersum HOM05D005408 ORTHO05D006790 3.6e-161 573.2 938 40.6
SEGI_14734 Sequoiadendron giganteum HOM05D005408 ORTHO05D006790 5.0e-155 552.7 700 44.6
unitig_736.g22443 Utricularia gibba HOM05D005408 ORTHO05D006790 6.3e-142 509.2 847 40.1
HPP92_008326 Vanilla planifolia HOM05D005408 ORTHO05D006790 3.6e-137 493.4 746 40.1
TPR.G25191 Trifolium pratense HOM05D005408 ORTHO05D006790 5.6e-122 443.0 653 41.0
Ah.13g072600 Amaranthus hybridus HOM05D005408 ORTHO05D006790 1.4e-117 428.3 712 43.1
Mapoly0063s0094 Marchantia polymorpha HOM05D005408 ORTHO05D006790 9.6e-106 389.0 516 39.3
Pp3c25_7300 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.1e-101 375.6 863 33.3
Os02g0809900 Oryza sativa ssp. japonica HOM05D005408 ORTHO05D006790 3.5e-100 370.5 309 57.9
Pp3c16_10130 Physcomitrium patens HOM05D005408 ORTHO05D006790 1.1e-96 359.0 646 35.0
AagrBONN_evm.TU.Sc2ySwM_228.3605 Anthoceros agrestis HOM05D005408 ORTHO05D006790 5.3e-88 330.1 451 39.7
SalBow8G3468 Salvia bowleyana HOM05D005408 ORTHO05D006790 4.4e-34 151.0 117 62.4
SalBow7G4774 Salvia bowleyana HOM05D005408 ORTHO05D006790 3.1e-32 144.8 117 59.8
C04p41430 Brassica napus HOM05D005408 ORTHO05D006790 1.2e-31 142.9 132 65.2
BolC4t25724H Brassica oleracea HOM05D005408 ORTHO05D006790 1.6e-31 142.5 132 65.2
CBR_g30942 Chara braunii HOM05D005408 ORTHO05D006790 1.0e-27 129.8 378 28.6
Hund11908 Selenicereus undatus HOM05D005408 ORTHO05D006790 7.0e-24 117.1 172 41.9
CiPaw.06G041800 Carya illinoinensis HOM05D005408 ORTHO05D006790 5.0e-22 110.9 302 37.4
Rhsim02G0041700 Rhododendron simsii HOM05D005408 ORTHO05D006790 4.7e-20 104.4 180 37.2
A04p07780 Brassica napus HOM05D005408 ORTHO05D006790 6.8e-19 100.5 84 69.0
BolC4t25725H Brassica oleracea HOM05D005408 ORTHO05D006790 2.6e-18 98.6 102 54.9
C04p41440 Brassica napus HOM05D005408 ORTHO05D006790 1.1e-16 93.2 102 53.9
BcaC02g09333 Brassica carinata HOM05D005408 ORTHO05D006790 2.0e-15 89.0 69 73.9


User provided reference genes

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