Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G14190 Arabidopsis thaliana HOM05D007897 ORTHO05D010061 1.2e-209 733.4 502 100.0
AL7G42190 Arabidopsis lyrata HOM05D007897 ORTHO05D010061 2.9e-184 649.0 503 88.5
CARHR220230 Cardamine hirsuta HOM05D007897 ORTHO05D010061 3.1e-162 575.9 507 83.2
Carub.0007s2820 Capsella rubella HOM05D007897 ORTHO05D010061 3.8e-160 568.9 507 81.3
Thhalv10027442m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 5.1e-149 531.9 508 81.3
Sp6g16180 Schrenkiella parvula HOM05D007897 ORTHO05D010061 1.6e-142 510.4 517 77.9
BcaB08g35766 Brassica carinata HOM05D007897 ORTHO05D010061 9.1e-138 494.6 508 75.8
C09p44340 Brassica napus HOM05D007897 ORTHO05D010061 3.5e-129 466.1 505 74.9
BolC9t57304H Brassica oleracea HOM05D007897 ORTHO05D010061 4.2e-127 459.1 505 74.5
A10p11440 Brassica napus HOM05D007897 ORTHO05D010061 9.4e-127 458.0 508 74.6
BraA10t43238Z Brassica rapa HOM05D007897 ORTHO05D010061 1.4e-125 454.1 508 74.2
Aa31LG9G3200 Aethionema arabicum HOM05D007897 ORTHO05D010061 2.7e-121 439.9 511 75.1
BcaC04g20377 Brassica carinata HOM05D007897 ORTHO05D010061 1.7e-115 420.6 505 65.9
THA.LOC104808674 Tarenaya hassleriana HOM05D007897 ORTHO05D010061 6.8e-109 398.7 507 68.8
Ciclev10004784m.g Citrus clementina HOM05D007897 ORTHO05D010061 1.7e-80 304.3 450 66.4
Manes.05G198900 Manihot esculenta HOM05D007897 ORTHO05D010061 3.0e-80 303.5 492 58.7
TWI23G0094 Tripterygium wilfordii HOM05D007897 ORTHO05D010061 4.4e-76 289.7 447 61.3
Cpa.g.sc157.16 Carica papaya HOM05D007897 ORTHO05D010061 2.7e-73 280.4 507 56.0
COL.COLO4_35959 Corchorus olitorius HOM05D007897 ORTHO05D010061 1.0e-72 278.5 465 52.5
Dinv32167 Davidia involucrata HOM05D007897 ORTHO05D010061 1.7e-72 277.7 498 57.2
Thecc.04G191100 Theobroma cacao HOM05D007897 ORTHO05D010061 2.3e-72 277.3 465 58.7
CSS0029276 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 1.5e-71 274.6 489 56.4
TAR633G2792 Trochodendron aralioides HOM05D007897 ORTHO05D010061 2.5e-71 273.9 445 61.3
Gorai.006G225200 Gossypium raimondii HOM05D007897 ORTHO05D010061 1.1e-69 268.5 429 55.0
Gohir.D09G201400 Gossypium hirsutum HOM05D007897 ORTHO05D010061 3.1e-69 266.9 429 55.0
QL06p027281 Quercus lobata HOM05D007897 ORTHO05D010061 3.1e-69 266.9 488 58.2
Duzib212G0894 Durio zibethinus HOM05D007897 ORTHO05D010061 5.8e-68 262.7 431 53.1
TAR633G2399 Trochodendron aralioides HOM05D007897 ORTHO05D010061 2.2e-67 260.8 433 61.4
Cfa008662 Carpinus fangiana HOM05D007897 ORTHO05D010061 6.4e-67 259.2 466 59.9
Haze_11681 Corylus avellana HOM05D007897 ORTHO05D010061 6.4e-67 259.2 486 58.0
MD04G1021700 Malus domestica HOM05D007897 ORTHO05D010061 2.7e-65 253.8 504 56.7
PSO063G5193 Papaver somniferum HOM05D007897 ORTHO05D010061 7.8e-65 252.3 430 51.4
CANSAT78G0179 Cannabis sativa HOM05D007897 ORTHO05D010061 6.6e-64 249.2 484 58.5
Cc03_g09150 Coffea canephora HOM05D007897 ORTHO05D010061 1.1e-63 248.4 454 59.7
Phvul.001G265200 Phaseolus vulgaris HOM05D007897 ORTHO05D010061 1.5e-63 248.1 430 60.0
Sabra14G0112700 Salix brachista HOM05D007897 ORTHO05D010061 5.6e-63 246.1 442 60.0
PGR142G1366 Punica granatum HOM05D007897 ORTHO05D010061 1.6e-62 244.6 427 47.1
Eucgr.L00640 Eucalyptus grandis HOM05D007897 ORTHO05D010061 4.8e-62 243.0 430 47.0
PSO017G4232 Papaver somniferum HOM05D007897 ORTHO05D010061 4.8e-62 243.0 430 51.2
VMungo1383G3288 Vigna mungo HOM05D007897 ORTHO05D010061 3.4e-60 236.9 450 56.9
FvH4_4g12861 Fragaria vesca HOM05D007897 ORTHO05D010061 2.9e-59 233.8 455 58.5
RcHm_v2.0_Chr4g0412521 Rosa chinensis HOM05D007897 ORTHO05D010061 3.8e-59 233.4 466 57.7
Sed0009503 Sechium edule HOM05D007897 ORTHO05D010061 1.1e-58 231.9 443 56.2
MBI07_g06195_MAGBIO Magnolia biondii HOM05D007897 ORTHO05D010061 9.3e-58 228.8 441 59.4
Glyma.18G003400 Glycine max HOM05D007897 ORTHO05D010061 2.7e-57 227.3 448 58.7
Lalb_Chr03g0036571 Lupinus albus HOM05D007897 ORTHO05D010061 7.9e-57 225.7 452 47.8
arahy.Tifrunner.gnm1.ann1.T7EAWL Arachis hypogaea HOM05D007897 ORTHO05D010061 1.0e-56 225.3 430 60.2
arahy.Tifrunner.gnm1.ann1.TEUF1S Arachis hypogaea HOM05D007897 ORTHO05D010061 1.3e-56 224.9 430 60.2
FAN07G0261 Fragaria x ananassa HOM05D005839 ORTHO05D005686 2.3e-56 224.2 455 57.6
Nn8g41262 Nelumbo nucifera HOM05D007897 ORTHO05D010061 2.3e-56 224.2 491 52.5
ATR0807G097 Amborella trichopoda HOM05D007897 ORTHO05D010061 3.0e-56 223.8 451 56.1
Lsat_1_v5_gn_1_70121 Lactuca sativa HOM05D007897 ORTHO05D010061 3.0e-56 223.8 501 47.7
HanXRQChr01g0022031 Helianthus annuus HOM05D007897 ORTHO05D010061 8.7e-56 222.2 499 50.1
HanXRQChr17g0535531 Helianthus annuus HOM05D007897 ORTHO05D010061 8.7e-56 222.2 500 49.8
Glyma.11G253700 Glycine max HOM05D007897 ORTHO05D010061 4.3e-55 219.9 444 58.8
ECA248G1461 Erigeron canadensis HOM05D007897 ORTHO05D010061 4.8e-54 216.5 429 53.4
CSS0018651 Camellia sinensis var. sinensis HOM05D007897 ORTHO05D010061 2.4e-53 214.2 382 62.8
Atru.chr3.1764 Acer truncatum HOM05D007897 ORTHO05D010061 1.9e-50 204.5 185 57.8
Gohir.A09G207900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 5.6e-47 193.0 184 54.9
CiPaw.02G062400 Carya illinoinensis HOM05D007897 ORTHO05D010061 3.1e-45 187.2 182 53.8
Oeu050722.1 Olea europaea HOM05D005839 ORTHO05D009229 5.8e-44 183.0 177 53.1
Thhalv10027431m.g Eutrema salsugineum HOM05D007897 ORTHO05D010061 1.0e-43 182.2 106 80.2
Potri.014G149500 Populus trichocarpa HOM05D007897 ORTHO05D010061 4.9e-43 179.9 180 53.9
HPP92_007232 Vanilla planifolia HOM05D007897 ORTHO05D010061 2.1e-41 174.5 471 50.5
FAN22G1341 Fragaria x ananassa HOM05D007897 ORTHO05D010061 3.5e-41 173.7 180 48.9
FAN17G1799 Fragaria x ananassa HOM05D005839 ORTHO05D005686 1.0e-40 172.2 382 57.6
Oeu050723.3 Olea europaea HOM05D007897 ORTHO05D009229 2.3e-40 171.0 156 55.1
Manes.05G199032 Manihot esculenta HOM05D007897 ORTHO05D010061 1.1e-34 152.1 173 48.6
Prupe.1G171300 Prunus persica HOM05D007897 ORTHO05D010061 3.4e-28 130.6 173 45.7
arahy.Tifrunner.gnm1.ann1.EZRM4Y Arachis hypogaea HOM05D007897 ORTHO05D010061 1.5e-23 115.2 310 64.2
HanXRQChr09g0243521 Helianthus annuus HOM05D007897 ORTHO05D010061 1.0e-16 92.4 128 38.3
A02p10540 Brassica napus HOM05D007897 ORTHO05D010061 2.0e-15 88.2 57 77.2
BcaC04g20378 Brassica carinata HOM05D007897 ORTHO05D032930 2.8e-14 84.3 105 54.3
C09p44300 Brassica napus HOM05D007897 ORTHO05D032930 3.7e-14 84.0 105 52.4
BolC9t57302H Brassica oleracea HOM05D007897 ORTHO05D032930 1.4e-13 82.0 105 53.3
Pp3c4_3090 Physcomitrium patens HOM05D007036 ORTHO05D008885 1.4e-13 82.0 423 35.7
PGR083G2517 Punica granatum HOM05D007036 ORTHO05D008885 1.8e-13 81.6 182 34.6
Ciclev10010414m.g Citrus clementina HOM05D007036 ORTHO05D008885 3.5e-12 77.4 184 32.1
arahy.Tifrunner.gnm1.ann1.UBG147 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.0e-11 75.9 185 31.4
arahy.Tifrunner.gnm1.ann1.1YAE55 Arachis hypogaea HOM05D007036 ORTHO05D008885 1.7e-11 75.1 185 31.4
Thecc.09G196200 Theobroma cacao HOM05D007036 ORTHO05D008885 8.5e-11 72.8 188 31.9
HPP92_028312 Vanilla planifolia HOM05D007036 ORTHO05D008885 5.5e-10 70.1 184 30.4
unitig_26.g9126 Utricularia gibba HOM05D007036 ORTHO05D008885 9.4e-10 69.3 175 30.9
SEGI_31150 Sequoiadendron giganteum HOM05D007036 ORTHO05D008885 2.1e-09 68.2 186 30.1
Gohir.D07G125650 Gossypium hirsutum HOM05D007897 ORTHO05D010061 2.7e-09 67.8 54 50.0
Gorai.001G135500 Gossypium raimondii HOM05D007897 ORTHO05D010061 4.7e-09 67.0 55 49.1
Zm00001eb035670 Zea mays HOM05D007036 ORTHO05D008885 8.0e-09 66.2 184 29.9
Gohir.D01G146401 Gossypium hirsutum HOM05D007897 ORTHO05D010061 2.3e-08 64.7 54 50.0
HanXRQChr09g0243531 Helianthus annuus HOM05D007897 ORTHO05D010061 2.3e-08 64.7 84 39.3
Mapoly0002s0203 Marchantia polymorpha HOM05D007036 ORTHO05D008885 2.3e-08 64.7 181 29.8
Os08g0520200 Oryza sativa ssp. japonica HOM05D007036 ORTHO05D008885 2.3e-08 64.7 184 28.3
Pp3c3_31860 Physcomitrium patens HOM05D007036 ORTHO05D008885 3.0e-08 64.3 119 34.5
Gorai.002G182100 Gossypium raimondii HOM05D007897 ORTHO05D010061 5.2e-08 63.5 52 50.0
Gohir.D13G096925 Gossypium hirsutum HOM05D007897 ORTHO05D010061 8.8e-08 62.8 82 41.5
SMO347G0413 Selaginella moellendorffii HOM05D007036 ORTHO05D008885 8.8e-08 62.8 134 32.1
FAN22G1963 Fragaria x ananassa HOM05D007897 ORTHO05D010061 3.7e-06 57.4 72 44.4
Gohir.D02G105900 Gossypium hirsutum HOM05D007897 ORTHO05D010061 4.8e-06 57.0 43 48.8


User provided reference genes

Program Settings