Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G14180 Arabidopsis thaliana HOM05D005651 ORTHO05D006877 0.0e+00 2572.3 1331 100.0
AL7G42200 Arabidopsis lyrata HOM05D005651 ORTHO05D006877 0.0e+00 2341.6 1327 91.2
Carub.0007s2821 Capsella rubella HOM05D005651 ORTHO05D006877 0.0e+00 2221.0 1308 87.7
Sp5g13520 Schrenkiella parvula HOM05D005651 ORTHO05D006877 0.0e+00 2155.2 1333 83.7
BcaC01g04643 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 2091.2 1328 81.9
BolC3t15845H Brassica oleracea HOM05D005651 ORTHO05D006877 0.0e+00 2091.2 1328 81.9
A03p29160 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 2070.4 1330 81.1
C03p35350 Brassica napus HOM05D005651 ORTHO05D006877 0.0e+00 2069.7 1318 81.4
BcaB01g02715 Brassica carinata HOM05D005651 ORTHO05D006877 0.0e+00 2064.7 1331 80.5
Thhalv10027320m.g Eutrema salsugineum HOM05D005651 ORTHO05D006877 0.0e+00 1996.1 1317 79.5
Aa31LG9G3210 Aethionema arabicum HOM05D005651 ORTHO05D006877 0.0e+00 1976.8 1309 77.7
THA.LOC104808673 Tarenaya hassleriana HOM05D005651 ORTHO05D006877 0.0e+00 1678.7 1316 66.3
Cpa.g.sc157.13 Carica papaya HOM05D005651 ORTHO05D006877 0.0e+00 1317.8 1309 54.9
Thecc.04G191000 Theobroma cacao HOM05D005651 ORTHO05D006877 0.0e+00 1251.5 1283 51.1
RcHm_v2.0_Chr4g0412511 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1245.0 1323 50.7
Prupe.1G172400 Prunus persica HOM05D005651 ORTHO05D006877 0.0e+00 1238.0 1319 51.4
RcHm_v2.0_Chr4g0412451 Rosa chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1232.6 1322 50.3
COL.COLO4_35960 Corchorus olitorius HOM05D005651 ORTHO05D006877 0.0e+00 1231.5 1310 50.0
GSVIVG01031569001 Vitis vinifera HOM05D005651 ORTHO05D006877 0.0e+00 1219.5 1294 51.2
FAN12G2514 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1218.8 1316 50.2
Gohir.D02G018500 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1217.6 1284 50.0
FAN17G0433 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1209.9 1315 49.7
FvH4_4g12860 Fragaria vesca HOM05D005651 ORTHO05D006877 0.0e+00 1208.4 1283 50.4
TAR362G0451 Trochodendron aralioides HOM05D005651 ORTHO05D006877 0.0e+00 1204.9 1293 51.1
QL06p027298 Quercus lobata HOM05D005651 ORTHO05D006877 0.0e+00 1204.1 1300 50.4
Gohir.A02G016900 Gossypium hirsutum HOM05D005651 ORTHO05D006877 0.0e+00 1203.0 1293 49.4
MD04G1022200 Malus domestica HOM05D005651 ORTHO05D006877 0.0e+00 1202.2 1334 49.1
Ciclev10004169m.g Citrus clementina HOM05D005651 ORTHO05D006877 0.0e+00 1198.3 1290 49.3
Gorai.005G022800 Gossypium raimondii HOM05D005651 ORTHO05D006877 0.0e+00 1195.6 1287 49.3
Haze_11684 Corylus avellana HOM05D005651 ORTHO05D006877 0.0e+00 1190.3 1424 47.3
Actinidia13837 Actinidia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1183.7 1278 50.0
CANSAT78G1330 Cannabis sativa HOM05D005651 ORTHO05D006877 0.0e+00 1174.8 1314 49.1
TPR.G18109 Trifolium pratense HOM05D005651 ORTHO05D006877 0.0e+00 1172.9 1281 49.0
Lj6g0020014 Lotus japonicus HOM05D005651 ORTHO05D006877 0.0e+00 1166.0 1286 48.8
Potri.002G232700 Populus trichocarpa HOM05D005651 ORTHO05D006877 0.0e+00 1158.7 1304 49.5
Glyma.11G253600 Glycine max HOM05D005651 ORTHO05D006877 0.0e+00 1142.5 1284 47.9
Sabra02G0177500 Salix brachista HOM05D005651 ORTHO05D006877 0.0e+00 1140.6 1278 49.1
Medtr3g084640 Medicago truncatula HOM05D005651 ORTHO05D006877 0.0e+00 1134.4 1278 49.1
Ca_16431_v3 Cicer arietinum L. HOM05D005651 ORTHO05D006877 0.0e+00 1132.5 1282 48.6
arahy.Tifrunner.gnm1.ann1.RD9PAU Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1132.1 1274 48.5
ClCG08G003660 Citrullus lanatus HOM05D005651 ORTHO05D006877 0.0e+00 1132.1 1306 46.8
FAN07G2778 Fragaria x ananassa HOM05D005651 ORTHO05D006877 0.0e+00 1130.5 1193 51.4
VMungo1383G2894 Vigna mungo HOM05D005651 ORTHO05D006877 0.0e+00 1122.5 1291 46.7
CARHR220210 Cardamine hirsuta HOM05D005651 ORTHO05D006877 0.0e+00 1119.8 680 85.3
Phvul.001G265000 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 0.0e+00 1112.1 1292 46.6
Sed0004152 Sechium edule HOM05D005651 ORTHO05D006877 0.0e+00 1111.3 1274 46.9
arahy.Tifrunner.gnm1.ann1.9V91M6 Arachis hypogaea HOM05D005651 ORTHO05D006877 0.0e+00 1102.0 1276 47.6
PGR083G1656 Punica granatum HOM05D005651 ORTHO05D006877 0.0e+00 1091.6 1279 46.8
Sc25g0005740 Simmondsia chinensis HOM05D005651 ORTHO05D006877 0.0e+00 1090.5 1289 46.9
Duzib212G0903 Durio zibethinus HOM05D005651 ORTHO05D006877 3.6e-311 1072.0 1139 50.2
MBI11_g07399_MAGBIO Magnolia biondii HOM05D005651 ORTHO05D006877 4.5e-309 1065.1 1321 46.6
PSO063G2404 Papaver somniferum HOM05D005651 ORTHO05D006877 9.9e-309 1063.9 1289 46.5
Nn8g41263 Nelumbo nucifera HOM05D005651 ORTHO05D006877 1.7e-308 1063.1 1303 46.2
TWI56G0421 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 4.9e-308 1061.6 1156 50.3
arahy.Tifrunner.gnm1.ann1.4U9R65 Arachis hypogaea HOM05D005651 ORTHO05D006877 2.4e-307 1059.3 1293 46.2
Aqoxy2G04074 Aquilegia oxysepala HOM05D005651 ORTHO05D006877 3.2e-307 1058.9 1294 46.7
Lj3C272T4 Lonicera japonica HOM05D005651 ORTHO05D006877 1.5e-304 1050.0 1317 45.5
arahy.Tifrunner.gnm1.ann1.EYX4BI Arachis hypogaea HOM05D005651 ORTHO05D006877 9.0e-302 1040.8 1284 46.2
Rhsim02G0090700 Rhododendron simsii HOM05D005651 ORTHO05D006877 2.6e-301 1039.3 1148 48.7
Cc03_g09140 Coffea canephora HOM05D005651 ORTHO05D006877 7.6e-301 1037.7 1290 43.8
Eucgr.H02630 Eucalyptus grandis HOM05D005651 ORTHO05D006877 2.5e-299 1032.7 1318 44.6
CsaV3_6G003070 Cucumis sativus L. HOM05D005651 ORTHO05D006877 3.7e-295 1018.8 1131 47.8
CARHR220220 Cardamine hirsuta HOM05D005651 ORTHO05D006877 4.8e-295 1018.5 653 81.8
HanXRQChr14g0436391 Helianthus annuus HOM05D005651 ORTHO05D006877 1.0e-292 1010.7 1310 44.3
Peaxi162Scf00017g02338 Petunia axillaris HOM05D005651 ORTHO05D006877 6.5e-292 1008.1 1286 44.0
Manes.05G198800 Manihot esculenta HOM05D005651 ORTHO05D006877 1.0e-289 1000.7 1040 51.7
Sopen03g033090 Solanum pennellii HOM05D005651 ORTHO05D006877 1.5e-288 996.9 1313 42.9
Lsat_1_v5_gn_2_47921 Lactuca sativa HOM05D005651 ORTHO05D006877 7.4e-288 994.6 1321 43.8
CiPaw.01G113500 Carya illinoinensis HOM05D005651 ORTHO05D006877 6.1e-282 974.9 1058 49.6
EL10Ac3g07437 Beta vulgaris HOM05D005651 ORTHO05D006877 2.8e-279 966.1 1313 43.0
Migut.G00953 Erythranthe guttata HOM05D005651 ORTHO05D006877 3.7e-279 965.7 1292 43.3
SGA_v2.0_scaffold12G06118 Striga asiatica HOM05D005651 ORTHO05D006877 6.3e-279 964.9 1285 43.5
Lalb_Chr24g0394531 Lupinus albus HOM05D005651 ORTHO05D006877 1.4e-278 963.8 1119 47.6
PSO017G3585 Papaver somniferum HOM05D005651 ORTHO05D006877 1.5e-277 960.3 1186 46.0
Solyc03g114040.3 Solanum lycopersicum HOM05D005651 ORTHO05D006877 2.2e-276 956.4 1358 41.2
ATR0582G376 Amborella trichopoda HOM05D005651 ORTHO05D006877 5.9e-269 931.8 1230 43.5
Cfa008665 Carpinus fangiana HOM05D005651 ORTHO05D006877 1.7e-268 930.2 921 53.4
AUR62018536 Chenopodium quinoa HOM05D005651 ORTHO05D006877 5.0e-268 928.7 1205 44.1
SalBow1G5228 Salvia bowleyana HOM05D005651 ORTHO05D006877 3.2e-267 926.0 1303 41.7
Nitab4.5_0001422g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 4.2e-267 925.6 1312 41.8
AUR62020881 Chenopodium quinoa HOM05D005651 ORTHO05D006877 6.1e-266 921.8 1249 43.4
SalBow1G5941 Salvia bowleyana HOM05D005651 ORTHO05D006877 5.7e-264 915.2 1306 41.7
Oeu050724.1 Olea europaea HOM05D005651 ORTHO05D006877 1.4e-262 910.6 1162 46.0
CAN.G781.41 Capsicum annuum HOM05D005651 ORTHO05D006877 3.8e-252 875.9 1265 40.6
DCAR_026668 Daucus carota HOM05D005651 ORTHO05D006877 2.8e-250 869.8 1298 40.2
Ah.04g149640 Amaranthus hybridus HOM05D005651 ORTHO05D006877 4.3e-235 819.3 1123 41.3
SHI01044 Sapria himalayana HOM05D005651 ORTHO05D006877 4.3e-227 792.7 1068 43.4
Nitab4.5_0009569g0040 Nicotiana tabacum HOM05D005651 ORTHO05D006877 2.1e-226 790.4 1014 44.6
Atru.chr3.1765 Acer truncatum HOM05D005651 ORTHO05D006877 2.8e-226 790.0 865 49.0
ECA238G0348 Erigeron canadensis HOM05D005651 ORTHO05D006877 3.4e-216 756.5 1187 38.8
Os04g0347800 Oryza sativa ssp. japonica HOM05D005651 ORTHO05D006877 1.0e-204 718.4 1097 39.7
SEGI_00340 Sequoiadendron giganteum HOM05D005651 ORTHO05D006877 2.4e-198 697.2 1336 35.1
Phvul.004G062100 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 3.3e-195 686.8 842 45.1
Dinv32168 Davidia involucrata HOM05D005651 ORTHO05D006877 6.4e-191 672.5 749 48.1
MELO3C026127.2 Cucumis melo HOM05D005651 ORTHO05D006877 2.7e-189 667.2 799 44.2
Zm00001eb389920 Zea mays HOM05D005651 ORTHO05D006877 1.2e-181 641.7 1026 38.1
unitig_748.g8008 Utricularia gibba HOM05D005651 ORTHO05D006877 1.1e-174 618.6 1036 37.4
Lj3C268T6 Lonicera japonica HOM05D005651 ORTHO05D006877 2.6e-160 570.9 765 43.9
Psat2g094320 Pisum sativum HOM05D005651 ORTHO05D006877 3.6e-149 533.9 582 50.5
Dinv32169 Davidia involucrata HOM05D005651 ORTHO05D006877 7.0e-145 519.6 462 58.4
CDE02G2388 Ceratophyllum demersum HOM05D005651 ORTHO05D006877 4.5e-144 516.9 647 45.0
Lj3A268T25 Lonicera japonica HOM05D005651 ORTHO05D006877 2.4e-137 494.6 488 54.1
Atru.chr3.1766 Acer truncatum HOM05D005651 ORTHO05D006877 3.7e-130 470.7 396 62.6
vmacro15590 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 1.8e-116 425.2 708 38.8
Phvul.006G051700 Phaseolus vulgaris HOM05D005651 ORTHO05D006877 3.5e-112 411.0 486 47.7
HPP92_024561 Vanilla planifolia HOM05D005651 ORTHO05D006877 4.6e-104 384.0 480 45.6
Mapoly0195s0003 Marchantia polymorpha HOM05D005651 ORTHO05D006877 1.8e-92 345.5 1270 25.4
Pp3c15_15330 Physcomitrium patens HOM05D005651 ORTHO05D006877 3.8e-90 337.8 1256 25.5
Prupe.1G176200 Prunus persica HOM05D005651 ORTHO05D006877 9.6e-70 270.0 605 33.4
PGSC0003DMG400024589 Solanum tuberosum HOM05D005651 ORTHO05D006877 1.8e-68 265.8 354 38.7
HPP92_024556 Vanilla planifolia HOM05D005651 ORTHO05D006877 7.4e-62 243.8 379 35.6
Psat2g094280 Pisum sativum HOM05D005651 ORTHO05D006877 3.7e-61 241.5 379 35.9
BraA03t12111Z Brassica rapa HOM05D005651 ORTHO05D006877 5.9e-59 234.2 160 77.5
HPP92_024560 Vanilla planifolia HOM05D005651 ORTHO05D006877 3.2e-57 228.4 378 39.7
BcaB01g02718 Brassica carinata HOM05D005651 ORTHO05D006877 9.1e-44 183.7 110 83.6
SHI01039 Sapria himalayana HOM05D005651 ORTHO05D006877 2.5e-41 175.6 168 50.6
Nitab4.5_0009569g0060 Nicotiana tabacum HOM05D005651 ORTHO05D006877 2.7e-40 172.2 201 41.3
Psat0s1368g0040 Pisum sativum HOM05D005651 ORTHO05D006877 5.9e-35 154.5 193 49.2
vmacro15591 Vaccinium macrocarpon HOM05D005651 ORTHO05D006877 4.7e-32 144.8 327 33.6
Lalb_Chr24g0394541 Lupinus albus HOM05D005651 ORTHO05D006877 1.8e-31 142.9 134 50.7
Ah.04g149630 Amaranthus hybridus HOM05D005651 ORTHO05D006877 9.8e-30 137.1 133 52.6
CSS0048714 Camellia sinensis var. sinensis HOM05D005651 ORTHO05D006877 1.3e-26 126.7 137 47.4
TWI56G0074 Tripterygium wilfordii HOM05D005651 ORTHO05D006877 9.8e-22 110.5 116 54.3
unitig_748.g8007 Utricularia gibba HOM05D005651 ORTHO05D006877 3.8e-18 98.6 222 27.9
CBR_g39378 Chara braunii HOM05D005651 ORTHO05D006877 1.2e-14 87.0 171 27.5
FAN22G0619 Fragaria x ananassa HOM05D005651 ORTHO05D006877 3.4e-14 85.5 130 36.9
Eucgr.F02519 Eucalyptus grandis HOM05D005651 ORTHO05D006877 7.0e-12 77.8 65 55.4
TAR633G2085 Trochodendron aralioides HOM05D005651 ORTHO05D006877 3.5e-11 75.5 120 32.5
TPR.G28787 Trifolium pratense HOM05D005651 ORTHO05D006877 1.7e-10 73.2 114 40.4
Lj5P691T0 Lonicera japonica HOM05D005651 ORTHO05D006877 3.9e-10 72.0 115 36.5
Pp3c5_2370 Physcomitrium patens HOM05D005651 ORTHO05D006877 5.6e-09 68.2 292 21.9
SHI01042 Sapria himalayana HOM05D005651 ORTHO05D006877 9.5e-09 67.4 59 62.7


User provided reference genes

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