Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G14110 Arabidopsis thaliana HOM05D004322 ORTHO05D005033 4.1e-110 401.4 198 100.0
AL7G42300 Arabidopsis lyrata HOM05D004322 ORTHO05D005033 3.4e-104 381.7 198 94.4
Sp7g11930 Schrenkiella parvula HOM05D004322 ORTHO05D005033 1.3e-100 369.8 198 90.9
BcaC02g09358 Brassica carinata HOM05D004322 ORTHO05D005033 1.9e-99 365.9 198 90.4
C04p41720 Brassica napus HOM05D004322 ORTHO05D005033 1.9e-99 365.9 198 90.4
Thhalv10025920m.g Eutrema salsugineum HOM05D004322 ORTHO05D005033 5.6e-99 364.4 198 90.9
A04p08040 Brassica napus HOM05D004322 ORTHO05D005033 9.5e-99 363.6 198 89.9
BcaB04g18113 Brassica carinata HOM05D004322 ORTHO05D005033 2.1e-98 362.5 198 88.4
BolC8t48099H Brassica oleracea HOM05D004322 ORTHO05D005033 2.3e-97 359.0 198 87.9
CARHR220130 Cardamine hirsuta HOM05D004322 ORTHO05D005033 2.3e-97 359.0 198 87.4
BraA08t33032Z Brassica rapa HOM05D004322 ORTHO05D005033 4.0e-97 358.2 198 87.4
Carub.0007s2831 Capsella rubella HOM05D004322 ORTHO05D005033 5.2e-97 357.8 198 88.4
BcaC07g37720 Brassica carinata HOM05D004322 ORTHO05D005033 8.9e-97 357.1 198 86.9
A08p10330 Brassica napus HOM05D004322 ORTHO05D005033 1.2e-96 356.7 198 87.4
BcaB02g08633 Brassica carinata HOM05D004322 ORTHO05D005033 1.5e-96 356.3 198 87.4
Aa31LG9G3260 Aethionema arabicum HOM05D004322 ORTHO05D005033 2.6e-96 355.5 198 86.9
BraA04t16492Z Brassica rapa HOM05D004322 ORTHO05D005033 2.2e-95 352.4 216 82.4
BolC4t25750H Brassica oleracea HOM05D004322 ORTHO05D005033 1.1e-94 350.1 219 81.3
BolC3t14638H Brassica oleracea HOM05D004322 ORTHO05D005033 6.0e-93 344.4 198 85.9
THA.LOC104804784 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 1.1e-86 323.6 198 76.8
BcaC01g05770 Brassica carinata HOM05D004322 ORTHO05D005033 8.1e-82 307.4 180 82.8
Lj6g0010196 Lotus japonicus HOM05D004322 ORTHO05D005033 1.8e-81 306.2 198 75.3
COL.COLO4_07504 Corchorus olitorius HOM05D004322 ORTHO05D005033 1.2e-80 303.5 198 73.2
Actinidia39064 Actinidia chinensis HOM05D004322 ORTHO05D005033 7.6e-80 300.8 198 71.7
GSVIVG01029694001 Vitis vinifera HOM05D004322 ORTHO05D005033 3.8e-79 298.5 198 71.2
arahy.Tifrunner.gnm1.ann1.1NY3A5 Arachis hypogaea HOM05D004322 ORTHO05D005033 4.9e-79 298.1 198 71.2
MD15G1419900 Malus domestica HOM05D004322 ORTHO05D005033 6.4e-79 297.7 198 71.7
arahy.Tifrunner.gnm1.ann1.H25YH4 Arachis hypogaea HOM05D004322 ORTHO05D005033 1.9e-78 296.2 198 71.2
Atru.chr6.1013_Atru.chr6.1014 Acer truncatum HOM05D004322 ORTHO05D005033 3.2e-78 295.4 198 70.7
Glyma.08G183900 Glycine max HOM05D004322 ORTHO05D005033 3.2e-78 295.4 198 72.2
Manes.10G133500 Manihot esculenta HOM05D004322 ORTHO05D005033 4.2e-78 295.0 198 70.7
Thecc.03G241900 Theobroma cacao HOM05D004322 ORTHO05D005033 4.2e-78 295.0 198 71.7
Duzib084G1309 Durio zibethinus HOM05D004322 ORTHO05D005033 7.1e-78 294.3 198 71.2
Gohir.A03G004600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 7.1e-78 294.3 198 70.7
Gohir.D03G167900 Gossypium hirsutum HOM05D004322 ORTHO05D005033 7.1e-78 294.3 198 70.7
Gorai.003G177600 Gossypium raimondii HOM05D004322 ORTHO05D005033 7.1e-78 294.3 198 70.7
Phvul.006G211500 Phaseolus vulgaris HOM05D004322 ORTHO05D005033 1.2e-77 293.5 198 71.2
Duzib205G0368 Durio zibethinus HOM05D004322 ORTHO05D005033 1.6e-77 293.1 198 70.2
PGSC0003DMG400029776 Solanum tuberosum HOM05D004322 ORTHO05D005033 2.1e-77 292.7 198 70.7
Nn5g28787 Nelumbo nucifera HOM05D004322 ORTHO05D005033 2.7e-77 292.4 198 68.2
VMungo0251G0859 Vigna mungo HOM05D004322 ORTHO05D005033 4.6e-77 291.6 198 71.2
Potri.001G207900 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.0e-76 290.4 200 70.0
Prupe.1G564800 Prunus persica HOM05D004322 ORTHO05D005033 1.0e-76 290.4 198 70.2
TAR376G0532 Trochodendron aralioides HOM05D004322 ORTHO05D005033 1.0e-76 290.4 198 69.7
CiPaw.05G042000 Carya illinoinensis HOM05D004322 ORTHO05D005033 1.3e-76 290.0 198 70.2
CANSAT11G1833 Cannabis sativa HOM05D004322 ORTHO05D005033 1.7e-76 289.7 198 69.7
Ca_00095_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 68.2
Ca_29934_v3 Cicer arietinum L. HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 68.2
MD08G1227500 Malus domestica HOM05D004322 ORTHO05D005033 5.1e-76 288.1 198 68.2
MELO3C014386.2 Cucumis melo HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 69.7
HanXRQChr03g0066481 Helianthus annuus HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 66.7
Hma1.2p1_0557F.1_g178250 Hydrangea macrophylla HOM05D004322 ORTHO05D005033 1.5e-75 286.6 199 68.8
TWI14G0809 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 1.5e-75 286.6 198 71.2
ClCG09G014140 Citrullus lanatus HOM05D004322 ORTHO05D005033 1.9e-75 286.2 198 68.7
Glyma.15G048900 Glycine max HOM05D004322 ORTHO05D005033 1.9e-75 286.2 198 69.2
CsaV3_6G037290 Cucumis sativus L. HOM05D004322 ORTHO05D005033 2.5e-75 285.8 198 68.7
RcHm_v2.0_Chr7g0223291 Rosa chinensis HOM05D004322 ORTHO05D005033 2.5e-75 285.8 198 69.2
AUR62018226 Chenopodium quinoa HOM05D004322 ORTHO05D005033 3.3e-75 285.4 198 66.7
PSO782G1933 Papaver somniferum HOM05D004322 ORTHO05D005033 3.3e-75 285.4 198 69.7
ECA240G2745 Erigeron canadensis HOM05D004322 ORTHO05D005033 7.3e-75 284.3 198 67.7
Solyc01g104600.4 Solanum lycopersicum HOM05D004322 ORTHO05D005033 1.6e-74 283.1 198 68.7
Ciclev10002548m.g Citrus clementina HOM05D004322 ORTHO05D005033 2.1e-74 282.7 199 69.3
Sed0005743 Sechium edule HOM05D004322 ORTHO05D005033 2.1e-74 282.7 198 68.2
PSO063G0058 Papaver somniferum HOM05D004322 ORTHO05D005033 2.8e-74 282.3 198 69.2
PGR042G3064 Punica granatum HOM05D004322 ORTHO05D005033 3.6e-74 282.0 198 65.7
TWI23G0630 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.6e-74 282.0 198 69.7
TWI23G1123 Tripterygium wilfordii HOM05D004322 ORTHO05D005033 3.6e-74 282.0 198 69.7
TPR.G19733 Trifolium pratense HOM05D004322 ORTHO05D005033 6.2e-74 281.2 198 67.7
Dinv24253 Davidia involucrata HOM05D004322 ORTHO05D005033 1.4e-73 280.0 198 67.7
MSTRG.16544 Avicennia marina HOM05D004322 ORTHO05D005033 6.9e-73 277.7 198 66.2
EL10Ac2g03233 Beta vulgaris HOM05D004322 ORTHO05D005033 1.5e-72 276.6 200 64.0
AUR62037741 Chenopodium quinoa HOM05D004322 ORTHO05D005033 1.5e-72 276.6 198 65.2
FvH4_5g29770 Fragaria vesca HOM05D004322 ORTHO05D005033 2.6e-72 275.8 198 65.7
Migut.N01026 Erythranthe guttata HOM05D004322 ORTHO05D005033 4.5e-72 275.0 198 65.2
Aqoxy5G01565 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 5.8e-72 274.6 198 65.2
Medtr2g007840 Medicago truncatula HOM05D004322 ORTHO05D005033 5.8e-72 274.6 198 64.6
Ah.11g045370 Amaranthus hybridus HOM05D004322 ORTHO05D005033 1.3e-71 273.5 198 62.6
Aqoxy5G02055 Aquilegia oxysepala HOM05D004322 ORTHO05D005033 1.3e-71 273.5 198 63.1
Eucgr.I02706 Eucalyptus grandis HOM05D004322 ORTHO05D005033 1.1e-70 270.4 198 64.6
ATR0584G136 Amborella trichopoda HOM05D004322 ORTHO05D005033 1.9e-70 269.6 198 62.6
FAN08G1384 Fragaria x ananassa HOM05D004322 ORTHO05D005033 3.2e-70 268.9 206 63.1
FAN18G2629 Fragaria x ananassa HOM05D004322 ORTHO05D005033 9.3e-70 267.3 206 62.6
FAN04G2215 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.1e-69 266.2 198 64.6
HPP92_016157 Vanilla planifolia HOM05D004322 ORTHO05D005033 4.6e-69 265.0 198 64.6
vmacro01793 Vaccinium macrocarpon HOM05D004322 ORTHO05D005033 6.0e-69 264.6 217 61.8
SalBow6G5232 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.0e-68 263.8 234 56.8
SalBow6G0151 Salvia bowleyana HOM05D004322 ORTHO05D005033 1.3e-68 263.5 234 56.4
MSTRG.5246 Avicennia marina HOM05D004322 ORTHO05D005033 1.8e-68 263.1 198 61.6
Sopen01g047110 Solanum pennellii HOM05D004322 ORTHO05D005033 2.3e-68 262.7 241 56.8
SGA_v2.0_scaffold145G36061 Striga asiatica HOM05D004322 ORTHO05D005033 8.7e-68 260.8 236 55.9
FAN13G1883 Fragaria x ananassa HOM05D004322 ORTHO05D005033 2.5e-67 259.2 198 62.6
Cfa015337 Carpinus fangiana HOM05D004322 ORTHO05D005033 7.4e-67 257.7 176 69.3
Peaxi162Scf01807g00011 Petunia axillaris HOM05D004322 ORTHO05D005033 7.4e-67 257.7 233 56.2
BolC9t60208H Brassica oleracea HOM05D004322 ORTHO05D005033 4.8e-66 255.0 145 84.1
Lj9A313T47 Lonicera japonica HOM05D004322 ORTHO05D005033 8.1e-66 254.2 170 71.2
Hund13069 Selenicereus undatus HOM05D004322 ORTHO05D005033 6.9e-65 251.1 253 52.2
Sc10g0004980 Simmondsia chinensis HOM05D004322 ORTHO05D005033 2.6e-64 249.2 173 66.5
CSS0031640 Camellia sinensis var. sinensis HOM05D004322 ORTHO05D005033 2.9e-63 245.7 171 64.3
CDE05G0654 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 3.8e-63 245.4 198 57.6
unitig_62.g23621 Utricularia gibba HOM05D004322 ORTHO05D005033 6.5e-63 244.6 198 59.6
Dinv19343 Davidia involucrata HOM05D004322 ORTHO05D005033 2.1e-61 239.6 155 71.0
Nitab4.5_0000249g0270 Nicotiana tabacum HOM05D004322 ORTHO05D005033 7.9e-61 237.7 188 62.8
Medtr0153s0030 Medicago truncatula HOM05D004322 ORTHO05D005033 3.0e-60 235.7 170 63.5
Os04g0428900 Oryza sativa ssp. japonica HOM05D004322 ORTHO05D005033 3.0e-60 235.7 198 57.6
Prupe.1G186200 Prunus persica HOM05D004322 ORTHO05D005033 1.5e-59 233.4 160 69.4
Actinidia00226 Actinidia chinensis HOM05D004322 ORTHO05D005033 7.4e-59 231.1 198 59.6
Zm00001eb082980 Zea mays HOM05D004322 ORTHO05D005033 6.9e-57 224.6 198 52.5
Lsat_1_v5_gn_9_116181 Lactuca sativa HOM05D004322 ORTHO05D005033 1.3e-55 220.3 191 55.5
SMO353G0429 Selaginella moellendorffii HOM05D004322 ORTHO05D005033 1.4e-54 216.9 198 50.0
Nitab4.5_0003071g0090 Nicotiana tabacum HOM05D004322 ORTHO05D005033 1.9e-54 216.5 198 56.1
Sabra01G0160700 Salix brachista HOM05D004322 ORTHO05D005033 2.5e-54 216.1 167 64.7
THA.LOC104809099 Tarenaya hassleriana HOM05D004322 ORTHO05D005033 5.1e-52 208.4 133 69.9
AagrBONN_evm.TU.Sc2ySwM_228.2369 Anthoceros agrestis HOM05D004322 ORTHO05D005033 9.7e-51 204.1 198 47.5
Rhsim11G0132600 Rhododendron simsii HOM05D004322 ORTHO05D005033 2.4e-49 199.5 134 70.9
Mapoly0036s0096 Marchantia polymorpha HOM05D004322 ORTHO05D005033 3.1e-49 199.1 196 48.0
Pp3c14_8990 Physcomitrium patens HOM05D004322 ORTHO05D005033 4.5e-48 195.3 197 45.7
Psat1g219720 Pisum sativum HOM05D004322 ORTHO05D005033 8.2e-42 174.5 120 65.0
Lalb_Chr15g0090601 Lupinus albus HOM05D004322 ORTHO05D005033 4.1e-41 172.2 130 59.2
Thecc.07G026500 Theobroma cacao HOM05D004322 ORTHO05D005033 1.0e-39 167.5 185 51.9
Cc02_g22150 Coffea canephora HOM05D004322 ORTHO05D005033 5.0e-39 165.2 115 64.3
CDE05G2724 Ceratophyllum demersum HOM05D004322 ORTHO05D005033 1.4e-38 163.7 130 60.8
Haze_01278 Corylus avellana HOM05D004322 ORTHO05D005033 1.4e-38 163.7 142 55.6
QL04p052291 Quercus lobata HOM05D004322 ORTHO05D005033 1.2e-37 160.6 115 65.2
CBR_g26281 Chara braunii HOM05D004322 ORTHO05D005033 7.9e-37 157.9 160 46.9
Cpa.g.sc157.24 Carica papaya HOM05D004322 ORTHO05D005033 1.8e-36 156.8 109 74.3
SEGI_09552 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.4e-33 147.1 115 52.2
SEGI_31940 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 1.8e-33 146.7 115 52.2
SHI16603 Sapria himalayana HOM05D004322 ORTHO05D005033 3.1e-33 146.0 142 45.8
CBR_g4180 Chara braunii HOM05D004322 ORTHO05D005033 1.9e-30 136.7 143 46.9
Medtr0153s0020 Medicago truncatula HOM05D004322 ORTHO05D005033 1.1e-27 127.5 87 58.6
CAN.G1352.11 Capsicum annuum HOM05D004322 ORTHO05D005033 1.7e-26 123.6 121 54.5
Cc02_g22140 Coffea canephora HOM05D004322 ORTHO05D005033 1.1e-25 120.9 82 75.6
Zm00001eb422450 Zea mays HOM05D004322 ORTHO05D005033 7.0e-25 118.2 145 38.6
Lalb_Chr15g0090591 Lupinus albus HOM05D004322 ORTHO05D005033 1.0e-23 114.4 77 76.6
Sabra01G0160600 Salix brachista HOM05D004322 ORTHO05D005033 1.1e-22 110.9 77 76.6
Manes.10G133677 Manihot esculenta HOM05D004322 ORTHO05D005033 7.2e-22 108.2 77 74.0
CAN.G1352.10 Capsicum annuum HOM05D004322 ORTHO05D005033 3.6e-21 105.9 77 70.1
Oeu044826.1 Olea europaea HOM05D004322 ORTHO05D005033 8.0e-21 104.8 77 68.8
Oeu044828.1 Olea europaea HOM05D004322 ORTHO05D005033 8.0e-21 104.8 77 68.8
Potri.003G022001 Populus trichocarpa HOM05D004322 ORTHO05D005033 1.8e-20 103.6 77 70.1
MBI18_g28448_MAGBIO Magnolia biondii HOM05D004322 ORTHO05D005033 2.3e-20 103.2 60 73.3
QL11p019123 Quercus lobata HOM05D004322 ORTHO05D005033 3.0e-20 102.8 75 69.3
Gohir.D08G183600 Gossypium hirsutum HOM05D004322 ORTHO05D005033 9.8e-19 97.8 77 62.3
SEGI_18567 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 6.3e-18 95.1 83 59.0
Glyma.10G118633 Glycine max HOM05D004322 ORTHO05D005033 1.2e-16 90.9 99 43.4
Glyma.10G118567 Glycine max HOM05D004322 ORTHO05D005033 1.6e-16 90.5 69 69.6
Oeu012736.1 Olea europaea HOM05D004322 ORTHO05D005033 1.6e-16 90.5 72 65.3
Gohir.D12G215800 Gossypium hirsutum HOM05D004322 ORTHO05D005033 2.7e-16 89.7 75 61.3
Thecc.07G026400 Theobroma cacao HOM05D004322 ORTHO05D005033 3.5e-16 89.4 72 55.6
BcaB04g18035 Brassica carinata HOM05D004322 ORTHO05D005033 1.3e-15 87.4 56 75.0
PRCOL_00004865 Prasinoderma coloniale HOM05D004322 ORTHO05D005033 5.0e-15 85.5 191 28.8
Cpa.g.sc157.23 Carica papaya HOM05D004322 ORTHO05D005033 8.5e-15 84.7 54 66.7
Medtr0153s0060 Medicago truncatula HOM05D004322 ORTHO05D005033 1.5e-14 84.0 145 39.3
Medtr2g007855 Medicago truncatula HOM05D004322 ORTHO05D005033 3.2e-14 82.8 61 65.6
BcaB07g33266 Brassica carinata HOM05D004322 ORTHO05D005033 5.5e-14 82.0 56 71.4
QL11p019127 Quercus lobata HOM05D004322 ORTHO05D005033 1.8e-12 77.0 64 57.8
Cre14.g608850 Chlamydomonas reinhardtii HOM05D004322 ORTHO05D005033 3.0e-12 76.3 119 36.1
Lsat_1_v5_gn_7_68880 Lactuca sativa HOM05D004322 ORTHO05D005033 4.9e-10 68.9 62 43.5
Lsat_1_v5_gn_9_65501 Lactuca sativa HOM05D001588 ORTHO05D002975 8.3e-10 68.2 54 44.4
TPR.G19730 Trifolium pratense HOM05D004322 ORTHO05D005033 1.4e-09 67.4 48 60.4
HPP92_016147 Vanilla planifolia HOM05D004322 ORTHO05D005033 9.2e-09 64.7 55 52.7
SEGI_23686 Sequoiadendron giganteum HOM05D004322 ORTHO05D005033 2.3e-07 60.1 51 54.9
TPR.G19742 Trifolium pratense HOM05D004322 ORTHO05D005033 3.8e-07 59.3 68 51.5


User provided reference genes

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