Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G13615 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 6.1e-19 97.1 72 100.0
AL7G42970 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 8.2e-16 86.7 70 91.4
Thhalv10026730m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 8.2e-16 86.7 70 91.4
CARHR219300 Cardamine hirsuta HOM05D005458 ORTHO05D005672 1.8e-15 85.5 48 93.8
A04p08570 Brassica napus HOM05D005458 ORTHO05D005672 5.3e-15 84.0 46 97.8
BolC4t25811H Brassica oleracea HOM05D005458 ORTHO05D005672 5.3e-15 84.0 46 97.8
BraA04t16551Z Brassica rapa HOM05D005458 ORTHO05D005672 5.3e-15 84.0 46 97.8
AT3G24100 Arabidopsis thaliana HOM05D005458 ORTHO05D005672 7.7e-14 80.1 48 89.6
BcaB04g17662 Brassica carinata HOM05D005458 ORTHO05D005672 1.0e-13 79.7 66 93.9
Sp7g11280 Schrenkiella parvula HOM05D017066 ORTHO05D005672 1.0e-13 79.7 64 96.9
Carub.0003s2440 Capsella rubella HOM05D005458 ORTHO05D005672 1.3e-13 79.3 48 89.6
BcaC02g09406 Brassica carinata HOM05D016886 ORTHO05D005672 1.7e-13 79.0 43 97.7
CARHR100100 Cardamine hirsuta HOM05D005458 ORTHO05D005672 1.7e-13 79.0 47 91.5
Lsat_1_v5_gn_6_60280 Lactuca sativa HOM05D005458 ORTHO05D005672 1.7e-13 79.0 48 87.5
TWI75G0430 Tripterygium wilfordii HOM05D005458 ORTHO05D005672 3.8e-13 77.8 48 85.4
AL3G39170 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 5.0e-13 77.4 47 89.4
CsaV3_2G011550 Cucumis sativus L. HOM05D005458 ORTHO05D005672 6.5e-13 77.0 48 85.4
PSO017G2416 Papaver somniferum HOM05D005458 ORTHO05D005672 6.5e-13 77.0 48 85.4
PSO063G0044 Papaver somniferum HOM05D005458 ORTHO05D005672 6.5e-13 77.0 48 85.4
Glyma.08G351700 Glycine max HOM05D005458 ORTHO05D005672 1.4e-12 75.9 48 85.4
Potri.017G055501 Populus trichocarpa HOM05D005458 ORTHO05D005672 2.5e-12 75.1 48 83.3
Aa31LG9G4030 Aethionema arabicum HOM05D005458 ORTHO05D005672 5.5e-12 73.9 43 90.7
Ciclev10006390m.g Citrus clementina HOM05D005458 ORTHO05D005672 9.4e-12 73.2 48 87.5
PGSC0003DMG400031295 Solanum tuberosum HOM05D005458 ORTHO05D005672 9.4e-12 73.2 48 83.3
Nn1g07886 Nelumbo nucifera HOM05D005458 ORTHO05D005672 1.2e-11 72.8 48 81.2
Prupe.1G008500 Prunus persica HOM05D005458 ORTHO05D005672 1.2e-11 72.8 48 85.4
PGR142G1434 Punica granatum HOM05D005458 ORTHO05D005672 1.6e-11 72.4 47 85.1
MELO3C020447.2 Cucumis melo HOM05D005458 ORTHO05D005672 2.1e-11 72.0 46 84.8
Thhalv10002785m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 2.1e-11 72.0 44 88.6
C08p07830 Brassica napus HOM05D005458 ORTHO05D005672 2.7e-11 71.6 41 92.7
BolC8t47637H Brassica oleracea HOM05D005458 ORTHO05D005672 2.7e-11 71.6 41 92.7
CAN.G1635.9 Capsicum annuum HOM05D005458 ORTHO05D005672 2.7e-11 71.6 46 82.6
Thecc.01G224300 Theobroma cacao HOM05D005458 ORTHO05D005672 2.7e-11 71.6 49 83.7
ECA248G3568 Erigeron canadensis HOM05D000609 ORTHO05D000462 3.6e-11 71.2 48 81.2
Gohir.A07G157232 Gossypium hirsutum HOM05D005458 ORTHO05D005672 3.6e-11 71.2 50 80.0
Duzib211G0320 Durio zibethinus HOM05D005458 ORTHO05D005672 4.6e-11 70.9 48 83.3
Gohir.D07G207100 Gossypium hirsutum HOM05D005458 ORTHO05D005672 4.6e-11 70.9 48 83.3
Gorai.001G233500 Gossypium raimondii HOM05D005458 ORTHO05D005672 4.6e-11 70.9 48 83.3
Phvul.008G127837 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 4.6e-11 70.9 48 79.2
ClCG06G007830 Citrullus lanatus HOM05D005458 ORTHO05D005672 7.9e-11 70.1 46 82.6
Mapoly0075s0018 Marchantia polymorpha HOM05D005458 ORTHO05D005672 7.9e-11 70.1 49 81.6
Ah.13g078150 Amaranthus hybridus HOM05D002428 ORTHO05D000462 1.0e-10 69.7 46 82.6
Aqoxy2G03857 Aquilegia oxysepala HOM05D005458 ORTHO05D005672 1.0e-10 69.7 48 81.2
BcaC07g37341 Brassica carinata HOM05D005458 ORTHO05D005672 1.0e-10 69.7 40 92.5
Manes.15G054000 Manihot esculenta HOM05D005458 ORTHO05D005672 1.0e-10 69.7 48 81.2
CANSAT11G1273 Cannabis sativa HOM05D005458 ORTHO05D005672 1.4e-10 69.3 48 83.3
Gohir.D07G163401 Gossypium hirsutum HOM05D005458 ORTHO05D005672 1.4e-10 69.3 49 79.6
Gorai.001G187200 Gossypium raimondii HOM05D005458 ORTHO05D005672 1.4e-10 69.3 49 79.6
Potri.014G056600 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.4e-10 69.3 49 81.6
CiPaw.01G120800 Carya illinoinensis HOM05D005458 ORTHO05D005672 2.3e-10 68.6 48 79.2
Duzib133G0368 Durio zibethinus HOM05D005458 ORTHO05D005672 3.0e-10 68.2 48 81.2
Manes.12G045600 Manihot esculenta HOM05D005458 ORTHO05D005672 3.0e-10 68.2 49 81.6
Prupe.8G201600 Prunus persica HOM05D005458 ORTHO05D005672 3.0e-10 68.2 49 79.6
Peaxi162Scf00047g00517 Petunia axillaris HOM05D005458 ORTHO05D005672 3.9e-10 67.8 49 79.6
Pp3c12_4180 Physcomitrium patens HOM05D005458 ORTHO05D005672 3.9e-10 67.8 49 83.7
Pp3c4_17970 Physcomitrium patens HOM05D005458 ORTHO05D005672 3.9e-10 67.8 49 83.7
Rhsim02G0057300 Rhododendron simsii HOM05D005458 ORTHO05D005672 5.1e-10 67.4 42 85.7
FvH4_4g16450 Fragaria vesca HOM05D005458 ORTHO05D005672 6.7e-10 67.0 48 81.2
Atru.chr4.1700 Acer truncatum HOM05D005458 ORTHO05D005672 8.8e-10 66.6 48 75.0
arahy.Tifrunner.gnm1.ann1.XWTR79 Arachis hypogaea HOM05D005458 ORTHO05D005672 8.8e-10 66.6 47 80.9
Lj1g0002931 Lotus japonicus HOM05D005458 ORTHO05D005672 8.8e-10 66.6 49 77.6
unitig_736.g22466 Utricularia gibba HOM05D005458 ORTHO05D005672 8.8e-10 66.6 43 83.7
Sc19g0007160 Simmondsia chinensis HOM05D005458 ORTHO05D005672 1.1e-09 66.2 49 79.6
Hma1.2p1_1407F.1_g281420 Hydrangea macrophylla HOM05D000434 ORTHO05D005672 2.5e-09 65.1 45 80.0
GSVIVG01021052001 Vitis vinifera HOM05D005458 ORTHO05D005672 2.5e-09 65.1 49 75.5
Duzib138G0965 Durio zibethinus HOM05D005458 ORTHO05D005672 3.3e-09 64.7 48 77.1
Migut.D02491 Erythranthe guttata HOM05D005458 ORTHO05D005672 3.3e-09 64.7 49 75.5
Gorai.004G226200 Gossypium raimondii HOM05D005458 ORTHO05D005672 3.3e-09 64.7 49 77.6
Psat3g147360 Pisum sativum HOM05D005458 ORTHO05D005672 3.3e-09 64.7 50 78.0
Cc03_g07880 Coffea canephora HOM05D005458 ORTHO05D005672 5.7e-09 63.9 38 89.5
Dinv27235 Davidia involucrata HOM05D005458 ORTHO05D005672 5.7e-09 63.9 42 83.3
Eucgr.H00051 Eucalyptus grandis HOM05D005458 ORTHO05D005672 7.4e-09 63.5 48 75.0
Pp3c12_4160 Physcomitrium patens HOM05D005458 ORTHO05D005672 7.4e-09 63.5 48 77.1
Sc05g0002070 Simmondsia chinensis HOM05D005458 ORTHO05D005672 7.4e-09 63.5 49 75.5
EL10Ac3g07484 Beta vulgaris HOM05D005458 ORTHO05D005672 9.7e-09 63.2 48 77.1
Cpa.g.sc8.142 Carica papaya HOM05D005458 ORTHO05D005672 9.7e-09 63.2 47 76.6
Pp3c13_10560 Physcomitrium patens HOM05D005458 ORTHO05D005672 1.3e-08 62.8 48 79.2
Carub.0007s2892 Capsella rubella HOM05D005458 ORTHO05D005672 1.7e-08 62.4 53 84.9
Potri.001G315400 Populus trichocarpa HOM05D005458 ORTHO05D005672 1.7e-08 62.4 48 77.1
Lalb_Chr01g0022281 Lupinus albus HOM05D005458 ORTHO05D005672 2.2e-08 62.0 46 78.3
Lalb_Chr19g0125681 Lupinus albus HOM05D005458 ORTHO05D005672 2.2e-08 62.0 46 78.3
GSVIVG01003386001 Vitis vinifera HOM05D005458 ORTHO05D005672 2.2e-08 62.0 47 76.6
Ca_17417_v3 Cicer arietinum L. HOM05D005458 ORTHO05D005672 2.8e-08 61.6 50 76.0
AL8G12500 Arabidopsis lyrata HOM05D005458 ORTHO05D005672 3.7e-08 61.2 67 74.6
COL.COLO4_12105 Corchorus olitorius HOM05D001094 ORTHO05D001050 3.7e-08 61.2 42 83.3
Haze_24813 Corylus avellana HOM05D005458 ORTHO05D005672 3.7e-08 61.2 47 76.6
Zm00001eb287790 Zea mays HOM05D005458 ORTHO05D005672 3.7e-08 61.2 48 75.0
Phvul.010G019701 Phaseolus vulgaris HOM05D005458 ORTHO05D005672 6.3e-08 60.5 49 71.4
DCAR_018640 Daucus carota HOM05D001184 ORTHO05D003397 8.2e-08 60.1 43 81.4
ATR1145G024 Amborella trichopoda HOM05D005458 ORTHO05D005672 1.4e-07 59.3 46 76.1
Os05g0407100 Oryza sativa ssp. japonica HOM05D005458 ORTHO05D005672 1.4e-07 59.3 48 75.0
Hund27148 Selenicereus undatus HOM05D005458 ORTHO05D005672 1.4e-07 59.3 47 76.6
Carub.0007s2961 Capsella rubella HOM05D005458 ORTHO05D005672 1.8e-07 58.9 49 71.4
Thhalv10026728m.g Eutrema salsugineum HOM05D005458 ORTHO05D005672 1.8e-07 58.9 73 54.8
FAN07G0843 Fragaria x ananassa HOM05D005458 ORTHO05D005672 1.8e-07 58.9 43 81.4
Medtr7g056410 Medicago truncatula HOM05D005458 ORTHO05D005672 1.8e-07 58.9 44 81.8
Glyma.18G164200 Glycine max HOM05D005458 ORTHO05D005672 2.4e-07 58.5 48 68.8
Cpa.g.sc2154.1 Carica papaya HOM05D005458 ORTHO05D005672 3.1e-07 58.2 43 79.1
TPR.G14533 Trifolium pratense HOM05D005458 ORTHO05D005672 3.1e-07 58.2 48 75.0
arahy.Tifrunner.gnm1.ann1.U1G5UA Arachis hypogaea HOM05D005458 ORTHO05D005672 5.3e-07 57.4 43 79.1
Lsat_1_v5_gn_8_89780 Lactuca sativa HOM05D005458 ORTHO05D005672 5.3e-07 57.4 49 71.4
MD04G1009100 Malus domestica HOM05D005458 ORTHO05D005672 5.3e-07 57.4 40 85.0
Hund16751 Selenicereus undatus HOM05D005458 ORTHO05D005672 5.3e-07 57.4 49 71.4
EL10Ac1g00186 Beta vulgaris HOM05D005458 ORTHO05D005672 6.9e-07 57.0 45 75.6
Lj3g0027829 Lotus japonicus HOM05D005458 ORTHO05D005672 9.1e-07 56.6 47 72.3
Ah.05g178960 Amaranthus hybridus HOM05D005458 ORTHO05D005672 1.2e-06 56.2 45 77.8
arahy.Tifrunner.gnm1.ann1.AN5TC9 Arachis hypogaea HOM05D005458 ORTHO05D005672 1.5e-06 55.8 43 76.7
AUR62001097 Chenopodium quinoa HOM05D001937 ORTHO05D007024 1.5e-06 55.8 47 72.3
Gohir.A08G195125 Gossypium hirsutum HOM05D005458 ORTHO05D005672 2.0e-06 55.5 43 76.7
Aa31LG9G4840 Aethionema arabicum HOM05D002547 ORTHO05D002649 2.6e-06 55.1 47 70.2
BcaB03g16069 Brassica carinata HOM05D005458 ORTHO05D005672 2.6e-06 55.1 43 72.1
Lalb_Chr07g0194291 Lupinus albus HOM05D005458 ORTHO05D005672 2.6e-06 55.1 47 70.2
Peaxi162Scf00594g00523 Petunia axillaris HOM05D005458 ORTHO05D005672 2.6e-06 55.1 43 76.7
Zm00001eb356280 Zea mays HOM05D005458 ORTHO05D005672 2.6e-06 55.1 43 74.4
VMungo1383G3675 Vigna mungo HOM05D005458 ORTHO05D000001 3.4e-06 54.7 47 66.0
arahy.Tifrunner.gnm1.ann1.58ZGJB Arachis hypogaea HOM05D005458 ORTHO05D005672 4.5e-06 54.3 42 76.2
Dinv27233 Davidia involucrata HOM05D012872 ORTHO05D005672 4.5e-06 54.3 42 71.4


User provided reference genes

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