Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G13540 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 5.8e-102 374.4 211 100.0
Carub.0007s2900 Capsella rubella HOM05D005697 ORTHO05D006951 6.2e-88 327.8 211 84.8
CARHR219170 Cardamine hirsuta HOM05D005697 ORTHO05D006951 1.1e-87 327.0 212 86.3
AL7G43130 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 5.4e-84 314.7 212 88.2
BcaC02g09418 Brassica carinata HOM05D005697 ORTHO05D006951 3.1e-79 298.9 212 79.2
BolC4t25821H Brassica oleracea HOM05D005697 ORTHO05D006951 3.1e-79 298.9 212 79.2
C04p42400 Brassica napus HOM05D005697 ORTHO05D006951 7.6e-78 294.3 213 78.9
BcaB03g16086 Brassica carinata HOM05D005697 ORTHO05D006951 8.7e-74 280.8 213 77.0
Sp7g11140 Schrenkiella parvula HOM05D005697 ORTHO05D006951 8.7e-74 280.8 212 76.9
A04p08640 Brassica napus HOM05D005697 ORTHO05D006951 4.3e-73 278.5 190 82.6
Thhalv10026312m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 9.9e-62 240.7 181 77.9
Aa31LG9G4120 Aethionema arabicum HOM05D005697 ORTHO05D006951 3.0e-58 229.2 212 66.5
THA.LOC104804567 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 2.1e-51 206.5 208 60.1
THA.LOC104808734 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 2.1e-51 206.5 217 57.6
BraA07t28595Z Brassica rapa HOM05D005697 ORTHO05D006951 7.1e-44 181.4 225 52.9
BcaB06g26605 Brassica carinata HOM05D005697 ORTHO05D006951 6.1e-43 178.3 226 52.2
BcaC06g35669 Brassica carinata HOM05D005697 ORTHO05D006951 8.7e-42 174.5 225 52.0
C07p12260 Brassica napus HOM05D005697 ORTHO05D006951 8.7e-42 174.5 225 52.0
BolC7t41693H Brassica oleracea HOM05D005697 ORTHO05D006951 8.7e-42 174.5 225 52.0
A07p08110 Brassica napus HOM05D005697 ORTHO05D006951 4.8e-40 168.7 229 52.0
Thhalv10002645m.g Eutrema salsugineum HOM05D005697 ORTHO05D006951 1.1e-39 167.5 223 53.8
Aa31LG8G10940 Aethionema arabicum HOM05D005697 ORTHO05D006951 2.0e-38 163.3 216 51.9
Sp3g22030 Schrenkiella parvula HOM05D005697 ORTHO05D006951 1.7e-37 160.2 228 51.3
THA.LOC104821627 Tarenaya hassleriana HOM05D005697 ORTHO05D006951 2.9e-37 159.5 216 51.4
BraA04t16558Z Brassica rapa HOM05D005697 ORTHO05D006951 1.2e-35 154.1 119 72.3
CARHR100340 Cardamine hirsuta HOM05D005697 ORTHO05D006951 2.3e-34 149.8 227 45.8
AT3G23930 Arabidopsis thaliana HOM05D005697 ORTHO05D006951 1.1e-31 141.0 224 50.9
AL3G39620 Arabidopsis lyrata HOM05D005697 ORTHO05D006951 1.2e-27 127.5 224 46.9
Carub.0003s2459 Capsella rubella HOM05D005697 ORTHO05D006951 8.8e-26 121.3 226 45.6
Duzib212G0179 Durio zibethinus HOM05D005697 ORTHO05D006951 7.4e-25 118.2 218 41.7
Duzib151G0493 Durio zibethinus HOM05D005697 ORTHO05D006951 2.4e-23 113.2 230 40.4
AUR62035343 Chenopodium quinoa HOM05D005697 ORTHO05D006951 1.5e-22 110.5 174 43.1
CiPaw.01G174800 Carya illinoinensis HOM05D005697 ORTHO05D006951 2.0e-22 110.2 221 40.3
Cpa.g.sc59.48 Carica papaya HOM05D005697 ORTHO05D006951 3.5e-22 109.4 225 38.7
CiPaw.02G104000 Carya illinoinensis HOM05D005697 ORTHO05D006951 4.5e-22 109.0 210 40.0
Glyma.20G081000 Glycine max HOM05D005697 ORTHO05D006951 1.3e-21 107.5 225 41.3
Nn1g03052 Nelumbo nucifera HOM05D005697 ORTHO05D006951 1.3e-21 107.5 194 41.2
AUR62035897 Chenopodium quinoa HOM05D005697 ORTHO05D006951 1.7e-21 107.1 218 37.2
Glyma.10G130200 Glycine max HOM05D005697 ORTHO05D006951 1.7e-21 107.1 227 41.9
Rhsim02G0049300 Rhododendron simsii HOM05D005697 ORTHO05D006951 1.7e-21 107.1 158 45.6
arahy.Tifrunner.gnm1.ann1.BKX7X4 Arachis hypogaea HOM05D005697 ORTHO05D006951 2.2e-21 106.7 209 41.1
Gorai.006G218600 Gossypium raimondii HOM05D005697 ORTHO05D006951 2.9e-21 106.3 221 39.8
Eucgr.H02876 Eucalyptus grandis HOM05D005697 ORTHO05D006951 3.8e-21 105.9 223 41.3
Gohir.D09G195200 Gossypium hirsutum HOM05D005697 ORTHO05D006951 5.0e-21 105.5 221 39.8
VMungo0720G1671 Vigna mungo HOM05D005697 ORTHO05D006951 5.0e-21 105.5 223 39.5
Cfa014837 Carpinus fangiana HOM05D005697 ORTHO05D006951 6.5e-21 105.1 196 43.9
Haze_11516 Corylus avellana HOM05D005697 ORTHO05D006951 6.5e-21 105.1 184 42.4
arahy.Tifrunner.gnm1.ann1.1SMG72 Arachis hypogaea HOM05D005697 ORTHO05D006951 1.1e-20 104.4 215 39.1
Haze_11522 Corylus avellana HOM05D005697 ORTHO05D006951 1.5e-20 104.0 184 41.8
Dinv27139 Davidia involucrata HOM05D005697 ORTHO05D006951 5.5e-20 102.1 218 40.8
Prupe.1G054100 Prunus persica HOM05D005697 ORTHO05D006951 9.4e-20 101.3 211 42.7
RcHm_v2.0_Chr4g0396171 Rosa chinensis HOM05D005697 ORTHO05D006951 1.6e-19 100.5 219 39.3
TPR.G23989 Trifolium pratense HOM05D005697 ORTHO05D006951 4.7e-19 99.0 231 35.1
FAN22G1047 Fragaria x ananassa HOM05D005697 ORTHO05D006951 6.1e-19 98.6 220 39.5
Thecc.04G218700 Theobroma cacao HOM05D005697 ORTHO05D006951 6.1e-19 98.6 224 39.7
ECA233G3140 Erigeron canadensis HOM05D005697 ORTHO05D006951 8.0e-19 98.2 187 40.1
FAN07G2767 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.4e-18 97.4 220 39.1
FAN17G2424 Fragaria x ananassa HOM05D005697 ORTHO05D006951 1.4e-18 97.4 220 39.5
TAR362G0923 Trochodendron aralioides HOM05D005697 ORTHO05D006951 1.4e-18 97.4 221 39.4
Lalb_Chr03g0036851 Lupinus albus HOM05D005697 ORTHO05D006951 2.3e-18 96.7 226 40.7
Sabra10G0044100 Salix brachista HOM05D005697 ORTHO05D006951 2.3e-18 96.7 181 40.9
Lalb_Chr19g0128591 Lupinus albus HOM05D005697 ORTHO05D006951 3.0e-18 96.3 174 41.4
GSVIVG01001870001 Vitis vinifera HOM05D005697 ORTHO05D006951 3.0e-18 96.3 117 48.7
Hund24861 Selenicereus undatus HOM05D005697 ORTHO05D006951 4.0e-18 95.9 212 38.2
Sc19g0005740 Simmondsia chinensis HOM05D005697 ORTHO05D006951 4.0e-18 95.9 153 43.8
FvH4_4g05260 Fragaria vesca HOM05D005697 ORTHO05D006951 5.2e-18 95.5 220 39.5
FAN12G1366 Fragaria x ananassa HOM05D005697 ORTHO05D006951 5.2e-18 95.5 220 39.5
Solyc09g091060.3 Solanum lycopersicum HOM05D005697 ORTHO05D006951 5.2e-18 95.5 172 45.3
TAR365G1050 Trochodendron aralioides HOM05D005697 ORTHO05D006951 5.2e-18 95.5 214 39.3
QL06p022167 Quercus lobata HOM05D005697 ORTHO05D006951 6.7e-18 95.1 225 38.2
CANSAT78G1745 Cannabis sativa HOM05D005697 ORTHO05D006951 8.8e-18 94.7 200 36.0
COL.COLO4_07143 Corchorus olitorius HOM05D005697 ORTHO05D006951 8.8e-18 94.7 229 39.3
MD13G1226700 Malus domestica HOM05D005697 ORTHO05D006951 1.1e-17 94.4 225 37.8
Manes.03G155600 Manihot esculenta HOM05D005697 ORTHO05D006951 1.1e-17 94.4 198 41.9
MBI07_g15425_MAGBIO Magnolia biondii HOM05D005697 ORTHO05D006951 1.5e-17 94.0 226 37.2
vmacro15494 Vaccinium macrocarpon HOM05D005697 ORTHO05D006951 1.5e-17 94.0 208 40.9
TWI09G0842 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 2.0e-17 93.6 189 39.2
TWI53G2060 Tripterygium wilfordii HOM05D005697 ORTHO05D006951 3.3e-17 92.8 181 38.1
Atru.chr4.1856 Acer truncatum HOM05D005697 ORTHO05D006951 4.4e-17 92.4 256 33.6
Potri.010G062600 Populus trichocarpa HOM05D005697 ORTHO05D006951 7.5e-17 91.7 187 39.6
EL10Ac3g06730 Beta vulgaris HOM05D005697 ORTHO05D006951 1.3e-16 90.9 198 40.4
Lsat_1_v5_gn_6_67840 Lactuca sativa HOM05D005697 ORTHO05D006951 1.3e-16 90.9 210 37.6
SalBow3G3550 Salvia bowleyana HOM05D005697 ORTHO05D006951 1.3e-16 90.9 207 38.2
Nitab4.5_0002738g0060 Nicotiana tabacum HOM05D005697 ORTHO05D006951 3.7e-16 89.4 202 39.6
Peaxi162Scf01007g00013 Petunia axillaris HOM05D005697 ORTHO05D006951 3.7e-16 89.4 230 36.5
SalBow3G1865 Salvia bowleyana HOM05D005697 ORTHO05D006951 3.7e-16 89.4 207 38.2
Nn3g19835 Nelumbo nucifera HOM05D005697 ORTHO05D006951 8.2e-16 88.2 216 34.3
CDE05G2497 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 1.4e-15 87.4 117 50.4
Cc03_g06970 Coffea canephora HOM05D005697 ORTHO05D006951 1.8e-15 87.0 208 37.5
Gohir.A09G201000 Gossypium hirsutum HOM05D005697 ORTHO05D006951 1.8e-15 87.0 221 35.3
Nitab4.5_0001998g0050 Nicotiana tabacum HOM05D005697 ORTHO05D006951 1.8e-15 87.0 197 39.6
Potri.008G174400 Populus trichocarpa HOM05D005697 ORTHO05D006951 1.8e-15 87.0 211 34.6
Medtr1g046070 Medicago truncatula HOM05D005697 ORTHO05D006951 5.3e-15 85.5 207 38.2
MSTRG.24645 Avicennia marina HOM05D005697 ORTHO05D006951 7.0e-15 85.1 210 36.2
CDE02G0931 Ceratophyllum demersum HOM05D005697 ORTHO05D006951 7.0e-15 85.1 190 38.4
Sed0013611 Sechium edule HOM05D005697 ORTHO05D006951 7.0e-15 85.1 196 40.8
Sopen09g034040 Solanum pennellii HOM05D005697 ORTHO05D006951 7.0e-15 85.1 172 37.8
Actinidia11384 Actinidia chinensis HOM05D005697 ORTHO05D006951 9.1e-15 84.7 99 49.5
BcaC01g03341 Brassica carinata HOM05D005697 ORTHO05D006951 1.2e-14 84.3 210 38.1
Oeu007537.1 Olea europaea HOM05D005697 ORTHO05D006951 1.2e-14 84.3 204 37.3
DCAR_024305 Daucus carota HOM05D005697 ORTHO05D006951 2.0e-14 83.6 224 33.0
Oeu008818.1 Olea europaea HOM05D005697 ORTHO05D006951 2.6e-14 83.2 184 38.6
CAN.G566.3 Capsicum annuum HOM05D005697 ORTHO05D006951 3.5e-14 82.8 100 48.0
Ciclev10005805m.g Citrus clementina HOM05D005697 ORTHO05D006951 3.5e-14 82.8 122 42.6
ClCG06G017260 Citrullus lanatus HOM05D005697 ORTHO05D006951 4.5e-14 82.4 199 36.7
CsaV3_1G001240 Cucumis sativus L. HOM05D005697 ORTHO05D006951 4.5e-14 82.4 199 37.2
PGSC0003DMG400008629 Solanum tuberosum HOM05D005697 ORTHO05D006951 4.5e-14 82.4 212 35.8
CSS0038279 Camellia sinensis var. sinensis HOM05D005697 ORTHO05D006951 7.7e-14 81.6 249 33.7
Peaxi162Scf00125g01016 Petunia axillaris HOM05D005697 ORTHO05D006951 7.7e-14 81.6 113 46.0
Phvul.007G233100 Phaseolus vulgaris HOM05D005697 ORTHO05D006951 7.7e-14 81.6 186 38.2
Sabra08G0132900 Salix brachista HOM05D005697 ORTHO05D006951 7.7e-14 81.6 197 34.0
Sed0003887 Sechium edule HOM05D005697 ORTHO05D006951 1.0e-13 81.3 203 36.5
Psat6g106680 Pisum sativum HOM05D005697 ORTHO05D006951 1.3e-13 80.9 109 46.8
Solyc12g097060.1 Solanum lycopersicum HOM05D005697 ORTHO05D006951 1.3e-13 80.9 227 37.0
CAN.G812.40 Capsicum annuum HOM05D005697 ORTHO05D006951 5.0e-13 79.0 182 40.1
Lj6g0023034 Lotus japonicus HOM05D005697 ORTHO05D006951 1.5e-12 77.4 184 39.1
Ah.13g075010 Amaranthus hybridus HOM05D005697 ORTHO05D006951 1.9e-12 77.0 204 32.8
Manes.15G047800 Manihot esculenta HOM05D005697 ORTHO05D006951 1.9e-12 77.0 173 39.9
PSO339G1845 Papaver somniferum HOM05D005697 ORTHO05D006951 1.9e-12 77.0 205 33.2
SGA_v2.0_scaffold31G12607 Striga asiatica HOM05D005697 ORTHO05D006951 1.9e-12 77.0 169 37.3
MELO3C026270.2 Cucumis melo HOM05D005697 ORTHO05D006951 2.5e-12 76.6 199 37.2
PSO063G5372 Papaver somniferum HOM05D005697 ORTHO05D006951 2.5e-12 76.6 205 33.2
MSTRG.21934 Avicennia marina HOM05D005697 ORTHO05D006951 7.2e-12 75.1 231 35.1
Actinidia39942 Actinidia chinensis HOM05D005697 ORTHO05D006951 2.1e-11 73.6 170 40.6
Migut.N00325 Erythranthe guttata HOM05D005697 ORTHO05D006951 1.0e-10 71.2 168 35.1
Glyma.14G108200 Glycine max HOM05D005697 ORTHO05D006951 5.2e-10 68.9 109 43.1
unitig_26.g9545 Utricularia gibba HOM05D005697 ORTHO05D006951 5.4e-07 58.9 190 34.2
HPP92_005453 Vanilla planifolia HOM05D005697 ORTHO05D006951 3.5e-06 56.2 190 36.3


User provided reference genes

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