Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.2e-149 533.1 271 100.0
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 4.2e-129 464.9 274 88.7
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 2.3e-111 406.0 292 76.7
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.1e-100 368.6 271 72.7
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 6.3e-93 344.7 293 67.6
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 3.2e-89 332.4 283 67.1
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-88 330.5 283 67.1
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 1.2e-88 330.5 283 67.1
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.8e-84 316.6 292 65.8
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 9.1e-84 314.3 280 64.6
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 1.5e-78 297.0 276 62.3
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 2.2e-77 293.1 297 57.6
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.3e-69 267.3 327 51.7
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.3e-63 246.5 313 49.5
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 1.8e-55 220.3 284 52.1
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 1.1e-52 211.1 318 41.8
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 2.4e-52 209.9 322 41.0
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 5.4e-52 208.8 325 40.3
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 7.0e-52 208.4 362 38.4
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 9.2e-52 208.0 310 43.2
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.6e-51 207.2 289 43.6
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.6e-51 207.2 363 37.7
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.5e-51 205.7 289 43.3
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 7.8e-51 204.9 374 39.0
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 1.7e-50 203.8 310 43.2
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.3e-50 203.4 310 42.6
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 2.9e-50 203.0 376 36.4
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 3.8e-50 202.6 303 43.9
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 3.8e-50 202.6 330 40.6
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 5.0e-50 202.2 343 39.9
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 6.6e-50 201.8 310 42.3
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 1.1e-49 201.1 303 43.9
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 1.5e-49 200.7 352 39.2
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 2.5e-49 199.9 363 37.5
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 3.3e-49 199.5 366 38.8
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 9.5e-49 198.0 363 37.7
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 1.2e-48 197.6 339 38.1
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 2.1e-48 196.8 349 38.1
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 2.8e-48 196.4 339 40.1
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 2.8e-48 196.4 329 39.5
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 4.7e-48 195.7 363 37.5
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.0e-47 194.5 309 39.2
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 1.8e-47 193.7 327 41.6
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 3.0e-47 193.0 316 40.2
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 4.0e-47 192.6 287 41.5
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 7.5e-46 188.3 350 35.7
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 2.2e-45 186.8 359 38.7
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 2.2e-45 186.8 342 38.6
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 8.3e-45 184.9 339 36.9
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 1.4e-44 184.1 369 35.0
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 1.9e-44 183.7 330 38.5
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 2.4e-44 183.3 363 36.1
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.4e-44 183.3 336 37.2
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 2.4e-44 183.3 336 37.8
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 4.1e-44 182.6 364 36.0
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.2e-43 181.0 298 41.3
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.6e-43 180.6 331 39.3
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 2.7e-43 179.9 355 34.4
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 1.0e-42 177.9 295 42.0
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.3e-42 177.6 356 34.8
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.3e-42 176.8 346 36.4
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 3.0e-42 176.4 334 38.0
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 3.0e-42 176.4 323 37.5
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 5.0e-42 175.6 321 38.9
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 1.9e-41 173.7 399 33.3
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 2.5e-41 173.3 338 37.0
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 2.5e-41 173.3 316 37.0
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 7.3e-41 171.8 327 37.6
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 7.3e-41 171.8 351 36.5
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 2.1e-40 170.2 306 38.2
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 2.8e-40 169.9 324 36.4
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.8e-40 169.9 358 35.8
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 3.6e-40 169.5 291 40.2
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 4.7e-40 169.1 337 34.4
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 6.2e-40 168.7 290 40.7
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 1.1e-39 167.9 318 34.9
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 3.1e-39 166.4 287 37.6
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 4.0e-39 166.0 290 40.0
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.2e-38 164.5 357 34.5
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 2.0e-38 163.7 336 36.0
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 4.4e-38 162.5 271 41.0
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 5.8e-38 162.2 308 37.7
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 9.8e-38 161.4 309 35.3
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 9.8e-38 161.4 393 32.6
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 9.8e-38 161.4 395 33.2
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.7e-37 160.6 332 35.2
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 2.9e-37 159.8 287 36.6
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 6.4e-37 158.7 321 35.8
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 6.4e-37 158.7 341 35.5
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 8.3e-37 158.3 335 36.4
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 9.2e-36 154.8 286 38.1
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.6e-35 154.1 347 32.6
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.5e-35 152.9 253 37.9
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 3.5e-35 152.9 253 37.9
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 6.0e-35 152.1 360 34.7
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 1.3e-34 151.0 285 37.5
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 6.6e-34 148.7 298 38.6
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.1e-33 147.9 294 36.4
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 1.9e-33 147.1 298 36.6
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.6e-33 145.6 285 34.4
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.5e-33 144.8 192 41.1
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 2.8e-32 143.3 145 49.0
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.1e-31 141.4 277 36.5
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 1.1e-31 141.4 292 32.2
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.1e-31 141.4 139 53.2
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 2.3e-31 140.2 286 35.7
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 1.5e-30 137.5 277 36.1
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 2.0e-30 137.1 317 36.3
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 2.6e-30 136.7 128 53.9
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 3.4e-30 136.3 286 41.3
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 4.4e-30 136.0 330 33.0
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 5.8e-30 135.6 306 36.6
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 2.2e-29 133.7 339 32.2
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 3.7e-29 132.9 318 34.0
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 4.9e-29 132.5 159 46.5
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.1e-28 131.3 373 29.2
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.9e-28 130.6 323 34.7
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.9e-28 130.6 323 34.7
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 7.1e-28 128.6 124 52.4
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 3.5e-27 126.3 364 31.3
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 7.8e-27 125.2 160 43.8
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 1.0e-26 124.8 330 33.3
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.0e-26 124.8 147 49.7
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.0e-26 124.8 147 49.7
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 1.0e-26 124.8 139 43.9
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 1.7e-26 124.0 147 49.0
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 5.1e-26 122.5 294 33.7
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 1.1e-25 121.3 280 32.9
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 1.5e-25 120.9 294 33.0
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 1.9e-25 120.6 260 33.5
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 2.5e-25 120.2 110 56.4
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 5.6e-25 119.0 260 33.5
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 7.3e-25 118.6 354 33.3
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 3.6e-24 116.3 312 34.0
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 1.1e-23 114.8 288 33.7
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 1.1e-23 114.8 288 33.7
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 1.1e-23 114.8 288 33.7
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.1e-23 114.8 139 46.0
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 1.1e-23 114.8 258 33.7
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 3.1e-23 113.2 247 34.4
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.2e-22 111.3 98 59.2
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.2e-22 111.3 98 59.2
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 2.0e-22 110.5 94 61.7
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 1.1e-20 104.8 273 31.5
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 2.4e-20 103.6 269 33.8
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 3.2e-20 103.2 111 49.5
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 5.4e-20 102.4 258 34.9
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 3.5e-19 99.8 102 50.0
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 7.8e-19 98.6 90 51.1
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 1.0e-18 98.2 291 32.0
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 1.7e-18 97.4 143 39.9
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 5.1e-18 95.9 266 33.5
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 6.6e-18 95.5 264 30.7
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 3.3e-17 93.2 107 43.0
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 5.6e-17 92.4 182 37.4
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 7.3e-17 92.0 280 27.5
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.2e-16 91.3 261 30.7
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 1.6e-16 90.9 118 47.5
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 2.8e-16 90.1 112 50.0
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 1.4e-15 87.8 73 53.4
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.1e-15 86.7 74 63.5
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 2.0e-14 84.0 74 60.8
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 4.4e-14 82.8 243 32.9
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 4.4e-14 82.8 280 31.1
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 1.6e-11 74.3 252 27.8
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 1.6e-11 74.3 275 25.8
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 6.0e-11 72.4 284 28.2
Os01g0884700 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 1.3e-10 71.2 249 29.7


User provided reference genes

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