Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G13330 Arabidopsis thaliana HOM05D006857 ORTHO05D008679 3.0e-251 871.3 429 100.0
AL9U10380 Arabidopsis lyrata HOM05D006857 ORTHO05D008679 1.1e-232 809.7 429 91.6
Carub.0007s2931 Capsella rubella HOM05D006857 ORTHO05D008679 7.8e-215 750.4 430 84.9
Sp7g10880 Schrenkiella parvula HOM05D006857 ORTHO05D008679 2.5e-213 745.3 432 85.0
CARHR218870 Cardamine hirsuta HOM05D006857 ORTHO05D008679 9.6e-213 743.4 429 85.1
A05p16520 Brassica napus HOM05D006857 ORTHO05D008679 8.1e-204 713.8 431 80.5
Thhalv10026810m.g Eutrema salsugineum HOM05D006857 ORTHO05D008679 1.4e-203 713.0 431 80.7
BraA05t20557Z Brassica rapa HOM05D006857 ORTHO05D008679 5.8e-202 707.6 431 79.8
C06p17330 Brassica napus HOM05D006857 ORTHO05D008679 6.4e-201 704.1 431 80.0
BolC6t36929H Brassica oleracea HOM05D006857 ORTHO05D008679 6.4e-201 704.1 431 80.0
Aa31LG9G4440 Aethionema arabicum HOM05D006857 ORTHO05D008679 1.6e-183 646.4 438 74.4
THA.LOC104804575 Tarenaya hassleriana HOM05D006857 ORTHO05D008679 2.0e-162 576.2 415 67.7
Cpa.g.sc44.1 Carica papaya HOM05D006857 ORTHO05D008679 1.8e-134 483.4 402 58.7
Cfa014781 Carpinus fangiana HOM05D006857 ORTHO05D008679 3.9e-129 465.7 408 57.1
CANSAT78G0655 Cannabis sativa HOM05D006857 ORTHO05D008679 6.6e-129 464.9 411 58.9
CiPaw.02G107000 Carya illinoinensis HOM05D006857 ORTHO05D008679 6.6e-129 464.9 405 57.3
CSS0034732 Camellia sinensis var. sinensis HOM05D006857 ORTHO05D008679 1.5e-128 463.8 402 57.7
FAN17G2805 Fragaria x ananassa HOM05D006857 ORTHO05D008679 2.5e-128 463.0 416 55.5
Manes.03G158900 Manihot esculenta HOM05D006857 ORTHO05D008679 3.3e-128 462.6 417 54.4
Solyc09g090690.4 Solanum lycopersicum HOM05D006857 ORTHO05D008679 3.3e-128 462.6 401 56.4
RcHm_v2.0_Chr4g0395361 Rosa chinensis HOM05D006857 ORTHO05D008679 4.3e-128 462.2 402 56.7
QL06p021004 Quercus lobata HOM05D006857 ORTHO05D008679 7.3e-128 461.5 407 56.0
Ciclev10005032m.g Citrus clementina HOM05D006857 ORTHO05D008679 9.5e-128 461.1 403 56.8
Sopen09g033630 Solanum pennellii HOM05D006857 ORTHO05D008679 2.1e-127 459.9 401 56.1
Prupe.1G048100 Prunus persica HOM05D006857 ORTHO05D008679 2.8e-127 459.5 408 57.1
Nitab4.5_0013063g0010 Nicotiana tabacum HOM05D006857 ORTHO05D008679 3.6e-127 459.1 435 54.3
FvH4_4g04570 Fragaria vesca HOM05D006857 ORTHO05D008679 8.0e-127 458.0 401 56.9
Aqoxy2G03746 Aquilegia oxysepala HOM05D006857 ORTHO05D008679 1.8e-126 456.8 408 56.4
TAR362G0064 Trochodendron aralioides HOM05D006857 ORTHO05D008679 1.8e-126 456.8 409 56.7
CAN.G524.29 Capsicum annuum HOM05D006857 ORTHO05D008679 4.0e-126 455.7 401 55.1
CsaV3_3G011690 Cucumis sativus L. HOM05D006857 ORTHO05D008679 4.0e-126 455.7 405 56.5
MD16G1226200 Malus domestica HOM05D006857 ORTHO05D008679 4.0e-126 455.7 402 56.0
TWI09G0838 Tripterygium wilfordii HOM05D006857 ORTHO05D008679 1.5e-125 453.8 430 54.2
Gorai.011G177900 Gossypium raimondii HOM05D006857 ORTHO05D008679 2.0e-125 453.4 415 55.4
PGSC0003DMG400017145 Solanum tuberosum HOM05D006857 ORTHO05D008679 2.6e-125 453.0 400 55.8
Aqoxy7G02302 Aquilegia oxysepala HOM05D006857 ORTHO05D008679 5.8e-125 451.8 408 55.9
Actinidia35816 Actinidia chinensis HOM05D006857 ORTHO05D008679 7.5e-125 451.4 401 55.4
Gohir.D10G158400 Gossypium hirsutum HOM05D006857 ORTHO05D008679 7.5e-125 451.4 415 55.2
Glyma.10G132600 Glycine max HOM05D006857 ORTHO05D008679 9.8e-125 451.1 403 54.8
Sabra08G0131200 Salix brachista HOM05D006857 ORTHO05D008679 1.3e-124 450.7 411 56.9
Atru.chr4.1915 Acer truncatum HOM05D006857 ORTHO05D008679 1.7e-124 450.3 435 54.7
GSVIVG01027915001 Vitis vinifera HOM05D006857 ORTHO05D008679 2.2e-124 449.9 396 56.8
Aqoxy7G02465 Aquilegia oxysepala HOM05D006857 ORTHO05D008679 4.9e-124 448.7 408 55.6
Thecc.04G264000 Theobroma cacao HOM05D006857 ORTHO05D008679 4.9e-124 448.7 415 55.4
ClCG05G004000 Citrullus lanatus HOM05D006857 ORTHO05D008679 6.4e-124 448.4 404 56.4
Lalb_Chr03g0036951 Lupinus albus HOM05D006857 ORTHO05D008679 6.4e-124 448.4 410 55.6
Nn1g02958 Nelumbo nucifera HOM05D006857 ORTHO05D008679 8.3e-124 448.0 409 55.7
PSO063G2784 Papaver somniferum HOM05D006857 ORTHO05D008679 8.3e-124 448.0 410 55.4
Cc03_g06310 Coffea canephora HOM05D006857 ORTHO05D008679 1.4e-123 447.2 402 56.5
Nitab4.5_0000194g0200 Nicotiana tabacum HOM05D006857 ORTHO05D008679 1.4e-123 447.2 435 52.6
PSO017G4333 Papaver somniferum HOM05D006857 ORTHO05D008679 1.4e-123 447.2 410 55.4
Duzib151G0230 Durio zibethinus HOM05D006857 ORTHO05D008679 9.2e-123 444.5 433 53.1
MD07G1289900 Malus domestica HOM05D006857 ORTHO05D008679 1.6e-122 443.7 403 55.6
Lsat_1_v5_gn_2_41360 Lactuca sativa HOM05D006857 ORTHO05D008679 2.1e-122 443.4 415 54.5
Medtr8g085480 Medicago truncatula HOM05D006857 ORTHO05D008679 3.5e-122 442.6 408 54.2
Ca_17963_v3 Cicer arietinum L. HOM05D006857 ORTHO05D008679 4.6e-122 442.2 410 54.6
vmacro08554 Vaccinium macrocarpon HOM05D006857 ORTHO05D008679 6.0e-122 441.8 423 54.6
Potri.008G171900 Populus trichocarpa HOM05D006857 ORTHO05D008679 1.0e-121 441.0 411 56.2
Haze_11458 Corylus avellana HOM05D006857 ORTHO05D008679 2.3e-121 439.9 369 59.3
PGR031G1141 Punica granatum HOM05D006857 ORTHO05D008679 2.3e-121 439.9 427 53.9
PGR031G1585 Punica granatum HOM05D006857 ORTHO05D008679 2.3e-121 439.9 427 53.9
HanXRQChr06g0182801 Helianthus annuus HOM05D006857 ORTHO05D008679 3.0e-121 439.5 415 55.7
VMungo0720G0849 Vigna mungo HOM05D006857 ORTHO05D008679 1.5e-120 437.2 402 54.7
Rhsim04G0172300 Rhododendron simsii HOM05D006857 ORTHO05D008679 1.9e-120 436.8 401 56.9
Peaxi162Scf00153g01846 Petunia axillaris HOM05D006857 ORTHO05D008679 3.3e-120 436.0 400 54.0
Psat7g076560 Pisum sativum HOM05D006857 ORTHO05D008679 7.3e-120 434.9 409 53.3
MELO3C006377.2 Cucumis melo HOM05D006857 ORTHO05D008679 1.6e-119 433.7 421 53.4
Sed0022275 Sechium edule HOM05D006857 ORTHO05D008679 6.2e-119 431.8 384 57.3
Lj6g0000537 Lotus japonicus HOM05D006857 ORTHO05D008679 1.3e-116 424.1 405 52.8
Hund20529 Selenicereus undatus HOM05D006857 ORTHO05D008679 1.3e-116 424.1 410 55.6
Ah.04g153670 Amaranthus hybridus HOM05D006857 ORTHO05D008679 6.4e-116 421.8 402 55.0
COL.COLO4_15963 Corchorus olitorius HOM05D006857 ORTHO05D008679 1.1e-115 421.0 370 57.3
SGA_v2.0_scaffold67G22686 Striga asiatica HOM05D006857 ORTHO05D008679 1.1e-115 421.0 422 52.6
EL10Ac3g06657 Beta vulgaris HOM05D006857 ORTHO05D008679 4.1e-115 419.1 403 53.1
Migut.G00555 Erythranthe guttata HOM05D006857 ORTHO05D008679 5.4e-115 418.7 406 52.5
arahy.Tifrunner.gnm1.ann1.I81STG Arachis hypogaea HOM05D006857 ORTHO05D008679 1.6e-114 417.2 408 53.4
arahy.Tifrunner.gnm1.ann1.SJBM1Y Arachis hypogaea HOM05D006857 ORTHO05D008679 7.8e-114 414.8 408 53.2
AUR62015271 Chenopodium quinoa HOM05D006857 ORTHO05D008679 8.6e-113 411.4 402 53.7
Eucgr.H00127 Eucalyptus grandis HOM05D006857 ORTHO05D008679 2.5e-112 409.8 395 54.2
Sc19g0005530 Simmondsia chinensis HOM05D006857 ORTHO05D008679 4.3e-112 409.1 426 52.1
ATR0787G032 Amborella trichopoda HOM05D006857 ORTHO05D008679 2.8e-111 406.4 416 51.0
ECA234G1558 Erigeron canadensis HOM05D006857 ORTHO05D005985 5.2e-110 402.1 362 56.4
Lj6C621T18 Lonicera japonica HOM05D006857 ORTHO05D008679 1.2e-109 401.0 499 44.7
AUR62018068 Chenopodium quinoa HOM05D006857 ORTHO05D008679 2.7e-106 389.8 388 52.8
DCAR_002298 Daucus carota HOM05D004684 ORTHO05D006904 2.5e-104 383.3 355 53.5
Hma1.2p1_0112F.1_g054740 Hydrangea macrophylla HOM05D006857 ORTHO05D008679 3.6e-103 379.4 359 54.9
SalBow3G1529 Salvia bowleyana HOM05D006857 ORTHO05D008679 9.0e-102 374.8 399 49.1
Phvul.007G231500 Phaseolus vulgaris HOM05D006857 ORTHO05D008679 2.6e-101 373.2 353 53.8
Zm00001eb077400 Zea mays HOM05D006857 ORTHO05D008679 3.2e-99 366.3 405 46.9
Oeu002936.2 Olea europaea HOM05D006857 ORTHO05D008679 1.6e-98 364.0 646 36.1
MSTRG.4172 Avicennia marina HOM05D006857 ORTHO05D008679 2.7e-98 363.2 370 50.8
BcaC08g44310 Brassica carinata HOM05D006857 ORTHO05D008679 1.3e-97 360.9 202 85.1
Os04g0510700 Oryza sativa ssp. japonica HOM05D006857 ORTHO05D008679 1.3e-97 360.9 409 46.9
BcaC08g44309 Brassica carinata HOM05D006857 ORTHO05D008679 6.7e-89 332.0 219 74.9
TPR.G11804 Trifolium pratense HOM05D006857 ORTHO05D008679 6.7e-89 332.0 303 54.8
CDE02G1483 Ceratophyllum demersum HOM05D006857 ORTHO05D008679 3.8e-84 316.2 411 42.3
Dinv27112 Davidia involucrata HOM05D006857 ORTHO05D008679 3.1e-78 296.6 303 51.5
Pp3c15_24290 Physcomitrium patens HOM05D006857 ORTHO05D008679 1.3e-71 274.6 448 36.6
Mapoly0127s0023 Marchantia polymorpha HOM05D006857 ORTHO05D008679 2.7e-66 256.9 444 36.0
MBI10_g35430_MAGBIO Magnolia biondii HOM05D006857 ORTHO05D008679 5.0e-60 236.1 289 46.7
SHI00774 Sapria himalayana HOM05D006857 ORTHO05D008679 6.5e-52 209.1 268 44.0
MBI10_g35433_MAGBIO Magnolia biondii HOM05D006857 ORTHO05D008679 8.2e-47 192.2 233 47.6
unitig_748.g8298 Utricularia gibba HOM05D006857 ORTHO05D008679 1.1e-46 191.8 205 46.3
unitig_748.g8297 Utricularia gibba HOM05D006857 ORTHO05D008679 4.2e-43 179.9 164 53.7
FvH4_5g26950 Fragaria vesca HOM05D006857 ORTHO05D008679 2.2e-36 157.5 118 61.9
FAN13G3085 Fragaria x ananassa HOM05D006857 ORTHO05D008679 5.5e-35 152.9 128 57.8
MBI10_g35434_MAGBIO Magnolia biondii HOM05D006857 ORTHO05D008679 1.6e-34 151.4 142 54.2
AagrBONN_evm.TU.Sc2ySwM_117.1189 Anthoceros agrestis HOM05D006857 ORTHO05D008679 2.7e-34 150.6 244 37.3
CDE08G1596 Ceratophyllum demersum HOM05D006857 ORTHO05D008679 7.2e-27 125.9 176 40.9
SEGI_21065 Sequoiadendron giganteum HOM05D006857 ORTHO05D008679 4.1e-14 83.6 98 40.8
TPR.G25294 Trifolium pratense HOM05D006857 ORTHO05D008679 1.0e-12 79.0 101 39.6
SHI00775 Sapria himalayana HOM05D000105 ORTHO05D000023 1.3e-12 78.6 106 41.5
MD13G1221100 Malus domestica HOM05D006857 ORTHO05D008679 3.6e-10 70.5 123 37.4
MCO07G483 Micromonas commoda HOM05D006857 ORTHO05D008679 5.8e-08 63.2 226 29.6
MCO09G143 Micromonas commoda HOM05D006857 ORTHO05D008679 2.9e-07 60.8 205 23.4
ATR0787G039 Amborella trichopoda HOM05D006857 ORTHO05D008679 8.3e-07 59.3 60 50.0
MBI10_g35432_MAGBIO Magnolia biondii HOM05D006857 ORTHO05D008679 1.1e-06 58.9 45 57.8


User provided reference genes

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