Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G13220 Arabidopsis thaliana HOM05D007485 ORTHO05D009437 3.0e-88 328.6 177 100.0
Carub.0007s2945 Capsella rubella HOM05D007485 ORTHO05D009437 8.6e-83 310.5 177 94.4
AL9U10750 Arabidopsis lyrata HOM05D007485 ORTHO05D009437 2.5e-82 308.9 172 96.5
Sp7g10710 Schrenkiella parvula HOM05D007485 ORTHO05D009437 2.3e-72 275.8 177 84.2
CARHR218700 Cardamine hirsuta HOM05D007485 ORTHO05D009437 1.2e-71 273.5 181 82.9
Thhalv10026377m.g Eutrema salsugineum HOM05D007485 ORTHO05D009437 1.9e-69 266.2 181 83.4
CARHR126310 Cardamine hirsuta HOM05D007485 ORTHO05D009437 4.3e-66 255.0 166 83.1
Aa31LG9G4570 Aethionema arabicum HOM05D007485 ORTHO05D009437 4.4e-63 245.0 177 79.7
BraA08t35252Z Brassica rapa HOM05D007485 ORTHO05D009437 3.3e-58 228.8 183 78.7
BcaB03g13243 Brassica carinata HOM05D007485 ORTHO05D009437 7.3e-58 227.6 181 77.9
A08p33350 Brassica napus HOM05D007485 ORTHO05D009437 7.3e-58 227.6 184 78.3
C08p14780 Brassica napus HOM05D007485 ORTHO05D009437 2.8e-57 225.7 188 76.6
BcaC07g38678 Brassica carinata HOM05D007485 ORTHO05D009437 6.2e-57 224.6 183 77.6
BolC8t49113H Brassica oleracea HOM05D007485 ORTHO05D009437 6.2e-57 224.6 183 77.6
THA.LOC104808772 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 2.6e-55 219.2 181 68.5
Manes.12G043200 Manihot esculenta HOM05D007485 ORTHO05D009437 6.9e-40 167.9 176 55.7
TWI59G0176 Tripterygium wilfordii HOM05D007485 ORTHO05D009437 7.6e-39 164.5 160 63.8
Gohir.A07G201700 Gossypium hirsutum HOM05D007485 ORTHO05D009437 1.3e-38 163.7 173 56.6
Gohir.D07G208000 Gossypium hirsutum HOM05D007485 ORTHO05D009437 3.8e-38 162.2 173 56.1
RcHm_v2.0_Chr6g0285341 Rosa chinensis HOM05D007485 ORTHO05D009437 6.4e-38 161.4 179 54.7
Thecc.01G230100 Theobroma cacao HOM05D007485 ORTHO05D009437 6.4e-38 161.4 172 55.2
FAN24G1628 Fragaria x ananassa HOM05D007485 ORTHO05D009437 2.4e-37 159.5 183 54.1
FvH4_2g19580 Fragaria vesca HOM05D007485 ORTHO05D009437 9.3e-37 157.5 183 53.0
FAN27G2610 Fragaria x ananassa HOM05D007485 ORTHO05D009437 1.6e-36 156.8 168 56.0
arahy.Tifrunner.gnm1.ann1.9XF3L6 Arachis hypogaea HOM05D007485 ORTHO05D009437 2.1e-36 156.4 150 59.3
Prupe.8G207500 Prunus persica HOM05D007485 ORTHO05D009437 2.1e-36 156.4 169 55.0
FAN15G2643 Fragaria x ananassa HOM05D007485 ORTHO05D009437 3.5e-36 155.6 167 55.1
Glyma.08G357300 Glycine max HOM05D007485 ORTHO05D009437 4.6e-36 155.2 150 58.0
MD05G1180900 Malus domestica HOM05D007485 ORTHO05D009437 6.0e-36 154.8 157 58.6
Phvul.008G122300 Phaseolus vulgaris HOM05D007485 ORTHO05D009437 7.9e-36 154.5 150 56.7
Ciclev10022604m.g Citrus clementina HOM05D007485 ORTHO05D009437 1.0e-35 154.1 154 55.2
Glyma.18G175800 Glycine max HOM05D007485 ORTHO05D009437 1.3e-35 153.7 150 57.3
Lalb_Chr19g0125461 Lupinus albus HOM05D007485 ORTHO05D009437 1.7e-35 153.3 178 50.6
Atru.chr5.1880 Acer truncatum HOM05D007485 ORTHO05D009437 3.9e-35 152.1 156 57.7
MD10G1169600 Malus domestica HOM05D007485 ORTHO05D009437 3.9e-35 152.1 184 52.7
PGR083G2217 Punica granatum HOM05D007485 ORTHO05D009437 5.1e-35 151.8 187 53.5
Migut.D00513 Erythranthe guttata HOM05D007485 ORTHO05D009437 1.1e-34 150.6 180 50.0
Duzib133G1001 Durio zibethinus HOM05D007485 ORTHO05D009437 1.9e-34 149.8 160 56.9
Gorai.001G234600 Gossypium raimondii HOM05D007485 ORTHO05D009437 1.9e-34 149.8 183 52.5
MSTRG.18375 Avicennia marina HOM05D007485 ORTHO05D009437 3.3e-34 149.1 173 52.0
GSVIVG01028546001 Vitis vinifera HOM05D007485 ORTHO05D009437 3.3e-34 149.1 183 51.9
Cfa002536 Carpinus fangiana HOM05D001836 ORTHO05D001519 4.3e-34 148.7 174 54.0
Sopen06g002830 Solanum pennellii HOM05D007485 ORTHO05D009437 4.3e-34 148.7 153 54.2
Medtr7g059255 Medicago truncatula HOM05D007485 ORTHO05D009437 7.3e-34 147.9 150 56.7
Solyc06g007990.4 Solanum lycopersicum HOM05D007485 ORTHO05D009437 1.3e-33 147.1 153 53.6
CANSAT01G1289 Cannabis sativa HOM05D007485 ORTHO05D009437 1.6e-33 146.7 157 56.7
Lj1g0002217 Lotus japonicus HOM05D007485 ORTHO05D009437 2.1e-33 146.4 152 59.2
Actinidia37576 Actinidia chinensis HOM05D007485 ORTHO05D009437 2.8e-33 146.0 160 56.9
Haze_24766 Corylus avellana HOM05D007485 ORTHO05D009437 2.8e-33 146.0 185 52.4
Cc01_g17350 Coffea canephora HOM05D007485 ORTHO05D009437 3.6e-33 145.6 155 57.4
VMungo1383G3371 Vigna mungo HOM05D007485 ORTHO05D009437 3.6e-33 145.6 144 56.2
CiPaw.03G152400 Carya illinoinensis HOM05D007485 ORTHO05D009437 1.1e-32 144.1 174 51.1
Nn1g03123 Nelumbo nucifera HOM05D007485 ORTHO05D009437 1.1e-32 144.1 185 49.7
CAN.G322.118 Capsicum annuum HOM05D007485 ORTHO05D009437 1.8e-32 143.3 160 51.9
Potri.002G251800 Populus trichocarpa HOM05D007485 ORTHO05D009437 4.0e-32 142.1 149 54.4
arahy.Tifrunner.gnm1.ann1.W4TMFE Arachis hypogaea HOM05D007485 ORTHO05D009437 9.0e-32 141.0 181 49.2
EL10Ac7g17803 Beta vulgaris HOM05D007485 ORTHO05D009437 9.0e-32 141.0 153 57.5
Sc05g0002340 Simmondsia chinensis HOM05D007485 ORTHO05D009437 3.4e-31 139.0 155 49.7
Rhsim13G0042600 Rhododendron simsii HOM05D007485 ORTHO05D009437 4.5e-31 138.7 173 49.7
CSS0034782 Camellia sinensis var. sinensis HOM05D007485 ORTHO05D009437 7.6e-31 137.9 160 53.8
AUR62008887 Chenopodium quinoa HOM05D007485 ORTHO05D009437 7.6e-31 137.9 177 47.5
Nitab4.5_0001740g0030 Nicotiana tabacum HOM05D007485 ORTHO05D009437 1.3e-30 137.1 165 50.3
Peaxi162Scf00499g00019 Petunia axillaris HOM05D007485 ORTHO05D009437 1.3e-30 137.1 172 51.2
CsaV3_3G028690 Cucumis sativus L. HOM05D007485 ORTHO05D009437 8.4e-30 134.4 153 54.9
Aqoxy2G03844 Aquilegia oxysepala HOM05D007485 ORTHO05D009437 1.9e-29 133.3 126 57.1
Eucgr.C02436 Eucalyptus grandis HOM05D007485 ORTHO05D009437 2.4e-29 132.9 167 49.1
SGA_v2.0_scaffold1G00709 Striga asiatica HOM05D007485 ORTHO05D009437 5.4e-29 131.7 181 46.4
SalBow6G3754 Salvia bowleyana HOM05D007485 ORTHO05D009437 7.1e-29 131.3 160 48.8
MELO3C012792.2 Cucumis melo HOM05D007485 ORTHO05D009437 9.3e-29 131.0 155 54.2
MBI10_g09190_MAGBIO Magnolia biondii HOM05D007485 ORTHO05D009437 1.6e-28 130.2 176 47.7
TPR.G9157 Trifolium pratense HOM05D007485 ORTHO05D009437 2.7e-28 129.4 105 63.8
Os12g0276100 Oryza sativa ssp. japonica HOM05D007485 ORTHO05D009437 3.5e-28 129.0 177 43.5
Lsat_1_v5_gn_9_12821 Lactuca sativa HOM05D007485 ORTHO05D009437 1.0e-27 127.5 148 54.1
HPP92_025808 Vanilla planifolia HOM05D007485 ORTHO05D009437 1.3e-27 127.1 155 48.4
ECA247G1773 Erigeron canadensis HOM05D007485 ORTHO05D009437 2.3e-27 126.3 135 54.8
PGSC0003DMG400014703 Solanum tuberosum HOM05D007485 ORTHO05D009437 1.5e-26 123.6 105 61.0
AUR62031821 Chenopodium quinoa HOM05D007485 ORTHO05D009437 4.3e-26 122.1 147 46.9
CDE12G0678 Ceratophyllum demersum HOM05D007485 ORTHO05D009437 1.6e-25 120.2 117 56.4
PSO017G5507 Papaver somniferum HOM05D007485 ORTHO05D009437 2.1e-25 119.8 138 52.2
vmacro02738 Vaccinium macrocarpon HOM05D007485 ORTHO05D009437 2.1e-25 119.8 209 40.7
Zm00001eb317800 Zea mays HOM05D007485 ORTHO05D009437 2.4e-24 116.3 154 45.5
HanXRQChr15g0468381 Helianthus annuus HOM05D007485 ORTHO05D009437 4.0e-24 115.5 144 50.7
Sed0027911 Sechium edule HOM05D007485 ORTHO05D009437 6.9e-24 114.8 227 40.5
PSO063G7151 Papaver somniferum HOM05D007485 ORTHO05D009437 9.0e-24 114.4 116 58.6
unitig_0.g180 Utricularia gibba HOM05D007485 ORTHO05D009437 4.5e-23 112.1 151 45.0
Zm00001eb102490 Zea mays HOM05D007485 ORTHO05D009437 2.9e-22 109.4 120 50.0
QL09p044412 Quercus lobata HOM05D007485 ORTHO05D009437 1.2e-20 104.0 126 53.2
THA.LOC104804650 Tarenaya hassleriana HOM05D007485 ORTHO05D009437 1.3e-19 100.5 85 63.5
COL.COLO4_36853 Corchorus olitorius HOM05D007485 ORTHO05D009437 3.3e-18 95.9 104 54.8
Psat0s3317g0040 Pisum sativum HOM05D007485 ORTHO05D009437 6.9e-16 88.2 133 45.1
QL09p045086 Quercus lobata HOM05D007485 ORTHO05D009437 1.5e-15 87.0 56 76.8
ATR0088G060 Amborella trichopoda HOM05D007485 ORTHO05D009437 1.9e-13 80.1 58 69.0
Pp3c25_600 Physcomitrium patens HOM05D007485 ORTHO05D009437 6.7e-11 71.6 127 37.0
Hund18369 Selenicereus undatus HOM05D007485 ORTHO05D009437 1.5e-10 70.5 117 39.3
HanXRQChr12g0377041 Helianthus annuus HOM05D007485 ORTHO05D009437 3.1e-08 62.8 55 54.5
ClCG07G001710 Citrullus lanatus HOM05D007485 ORTHO05D009437 3.4e-07 59.3 74 51.4
Mapoly0101s0026 Marchantia polymorpha HOM05D007485 ORTHO05D009437 1.7e-06 57.0 93 41.9
Ca_22684_v3 Cicer arietinum L. HOM05D007485 ORTHO05D009437 2.2e-06 56.6 52 55.8
CBR_g11056 Chara braunii HOM05D007485 ORTHO05D009437 6.5e-06 55.1 109 34.9
Nitab4.5_0003180g0040 Nicotiana tabacum HOM05D007485 ORTHO05D009437 8.5e-06 54.7 112 34.8


User provided reference genes

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