Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G13200 Arabidopsis thaliana HOM05D005884 ORTHO05D007282 1.4e-72 276.6 186 100.0
AL9U10790 Arabidopsis lyrata HOM05D005884 ORTHO05D007282 1.2e-50 203.8 185 78.4
Carub.0007s2947 Capsella rubella HOM05D005884 ORTHO05D007282 5.7e-45 184.9 188 64.9
Thhalv10026263m.g Eutrema salsugineum HOM05D005884 ORTHO05D007282 2.9e-41 172.6 197 61.9
Sp7g10660 Schrenkiella parvula HOM05D005884 ORTHO05D007282 9.4e-40 167.5 202 57.4
BcaB03g16138 Brassica carinata HOM05D005884 ORTHO05D007282 3.5e-34 149.1 200 55.0
A04p08870 Brassica napus HOM05D005884 ORTHO05D007282 1.5e-29 133.7 202 51.5
BraA04t16580Z Brassica rapa HOM05D005884 ORTHO05D007282 1.3e-28 130.6 201 49.3
BolC4t25837H Brassica oleracea HOM05D005884 ORTHO05D007282 2.2e-28 129.8 201 48.8
BcaC02g09439 Brassica carinata HOM05D005884 ORTHO05D007282 3.7e-28 129.0 201 48.8
C04p42740 Brassica napus HOM05D005884 ORTHO05D007282 1.6e-26 123.6 201 49.8
Aa31LG9G4610 Aethionema arabicum HOM05D005884 ORTHO05D007282 5.9e-26 121.7 206 55.3
CARHR218670 Cardamine hirsuta HOM05D005884 ORTHO05D007282 6.6e-25 118.2 192 56.2
THA.LOC104808781 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 4.4e-21 105.5 132 62.1
CSS0032503 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 1.6e-18 97.1 115 53.0
CiPaw.03G150900 Carya illinoinensis HOM05D005884 ORTHO05D007282 1.6e-18 97.1 154 44.2
Nitab4.5_0000866g0050 Nicotiana tabacum HOM05D005884 ORTHO05D007282 1.6e-18 97.1 151 41.1
Eucgr.H00802 Eucalyptus grandis HOM05D005884 ORTHO05D007282 2.7e-18 96.3 120 50.8
CSS0024949 Camellia sinensis var. sinensis HOM05D005884 ORTHO05D007282 4.5e-18 95.5 115 52.2
Nn1g07794 Nelumbo nucifera HOM05D005884 ORTHO05D007282 4.5e-18 95.5 128 48.4
CAN.G122.4 Capsicum annuum HOM05D005884 ORTHO05D007282 5.9e-18 95.1 90 56.7
Nitab4.5_0003790g0020 Nicotiana tabacum HOM05D005884 ORTHO05D007282 7.8e-18 94.7 136 43.4
Manes.13G044700 Manihot esculenta HOM05D005884 ORTHO05D007282 1.0e-17 94.4 116 49.1
Sopen09g024260 Solanum pennellii HOM05D005884 ORTHO05D007282 1.0e-17 94.4 90 56.7
PGSC0003DMG400028009 Solanum tuberosum HOM05D005884 ORTHO05D007282 1.0e-17 94.4 79 60.8
HanXRQChr01g0014641 Helianthus annuus HOM05D005884 ORTHO05D007282 1.3e-17 94.0 131 47.3
Glyma.03G080200 Glycine max HOM05D005884 ORTHO05D007282 1.7e-17 93.6 151 42.4
Lsat_1_v5_gn_5_179880 Lactuca sativa HOM05D005884 ORTHO05D007282 1.7e-17 93.6 133 46.6
Peaxi162Scf00107g01314 Petunia axillaris HOM05D005884 ORTHO05D007282 1.7e-17 93.6 96 54.2
Solyc09g061440.4 Solanum lycopersicum HOM05D005884 ORTHO05D007282 1.7e-17 93.6 90 56.7
Duzib133G0404 Durio zibethinus HOM05D005884 ORTHO05D007282 2.3e-17 93.2 124 46.8
Hma1.2p1_0351F.1_g132860 Hydrangea macrophylla HOM05D005884 ORTHO05D007282 2.3e-17 93.2 123 49.6
MSTRG.18383 Avicennia marina HOM05D005884 ORTHO05D007282 2.9e-17 92.8 126 46.0
CiPaw.04G106200 Carya illinoinensis HOM05D005884 ORTHO05D007282 2.9e-17 92.8 181 38.7
Oeu015899.1 Olea europaea HOM05D005884 ORTHO05D007282 2.9e-17 92.8 134 47.0
TAR362G0919 Trochodendron aralioides HOM05D005884 ORTHO05D007282 2.9e-17 92.8 129 47.3
THA.LOC104804605 Tarenaya hassleriana HOM05D005884 ORTHO05D007282 3.9e-17 92.4 115 53.0
Dinv04661 Davidia involucrata HOM05D005884 ORTHO05D007282 5.0e-17 92.0 126 47.6
DCAR_018555 Daucus carota HOM05D005884 ORTHO05D007282 6.6e-17 91.7 138 44.9
ECA248G2691 Erigeron canadensis HOM05D005884 ORTHO05D007282 6.6e-17 91.7 136 47.1
Phvul.010G014200 Phaseolus vulgaris HOM05D005884 ORTHO05D007282 6.6e-17 91.7 192 38.0
Aqoxy2G03761 Aquilegia oxysepala HOM05D005884 ORTHO05D007282 8.6e-17 91.3 133 45.1
CANSAT01G0442 Cannabis sativa HOM05D005884 ORTHO05D007282 8.6e-17 91.3 157 54.8
Glyma.18G149300 Glycine max HOM05D005884 ORTHO05D007282 8.6e-17 91.3 150 42.0
Lj3g0000124 Lotus japonicus HOM05D005884 ORTHO05D007282 1.1e-16 90.9 160 41.2
FAN15G1921 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.5e-16 90.5 116 53.4
FAN24G3425 Fragaria x ananassa HOM05D005884 ORTHO05D007282 1.5e-16 90.5 112 50.9
Migut.D00525 Erythranthe guttata HOM05D005884 ORTHO05D007282 1.9e-16 90.1 130 43.8
Lj2A1133T33 Lonicera japonica HOM05D005884 ORTHO05D007282 1.9e-16 90.1 106 55.7
PSO017G2163 Papaver somniferum HOM05D005884 ORTHO05D007282 1.9e-16 90.1 102 52.0
FvH4_2g19250 Fragaria vesca HOM05D005884 ORTHO05D007282 2.5e-16 89.7 119 50.4
TWI36G0226 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 2.5e-16 89.7 94 54.3
Ah.08g213990 Amaranthus hybridus HOM05D005884 ORTHO05D007282 3.3e-16 89.4 118 47.5
FAN15G1595 Fragaria x ananassa HOM05D005884 ORTHO05D007282 3.3e-16 89.4 110 53.6
FAN27G0062 Fragaria x ananassa HOM05D005884 ORTHO05D007282 3.3e-16 89.4 112 50.0
PSO063G4085 Papaver somniferum HOM05D005884 ORTHO05D007282 3.3e-16 89.4 139 43.2
PGR044G0377 Punica granatum HOM05D005884 ORTHO05D007282 4.3e-16 89.0 124 44.4
Cpa.g.sc8.170 Carica papaya HOM05D005884 ORTHO05D007282 5.6e-16 88.6 159 39.6
Duzib138G0327 Durio zibethinus HOM05D005884 ORTHO05D007282 5.6e-16 88.6 182 39.6
Migut.N02263 Erythranthe guttata HOM05D005884 ORTHO05D007282 5.6e-16 88.6 117 47.9
QL02p021928 Quercus lobata HOM05D005884 ORTHO05D007282 5.6e-16 88.6 119 44.5
TWI18G1166 Tripterygium wilfordii HOM05D005884 ORTHO05D007282 5.6e-16 88.6 99 56.6
Ciclev10022209m.g Citrus clementina HOM05D005884 ORTHO05D007282 7.3e-16 88.2 125 47.2
COL.COLO4_10043 Corchorus olitorius HOM05D003123 ORTHO05D007282 7.3e-16 88.2 101 51.5
MBI07_g23671_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 7.3e-16 88.2 96 50.0
GSVIVG01028583001 Vitis vinifera HOM05D005884 ORTHO05D007282 7.3e-16 88.2 103 47.6
Lalb_Chr07g0194041 Lupinus albus HOM05D005884 ORTHO05D007282 1.2e-15 87.4 145 42.8
Manes.12G041200 Manihot esculenta HOM05D005884 ORTHO05D007282 1.2e-15 87.4 94 50.0
HPP92_022492 Vanilla planifolia HOM05D005884 ORTHO05D007282 1.2e-15 87.4 104 46.2
AUR62031836 Chenopodium quinoa HOM05D005884 ORTHO05D007282 1.6e-15 87.0 115 47.8
Gohir.A07G156200 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.6e-15 87.0 95 51.6
Thecc.01G227600 Theobroma cacao HOM05D005884 ORTHO05D007282 1.6e-15 87.0 123 43.9
Cc03_g12390 Coffea canephora HOM05D005884 ORTHO05D007282 3.6e-15 85.9 129 46.5
MD05G1177500 Malus domestica HOM05D005884 ORTHO05D007282 3.6e-15 85.9 98 52.0
SalBow4G1286 Salvia bowleyana HOM05D005884 ORTHO05D007282 3.6e-15 85.9 98 52.0
Potri.002G241000 Populus trichocarpa HOM05D005884 ORTHO05D007282 4.7e-15 85.5 108 46.3
Dinv19212 Davidia involucrata HOM05D005884 ORTHO05D007282 6.1e-15 85.1 136 42.6
RcHm_v2.0_Chr6g0285061 Rosa chinensis HOM05D005884 ORTHO05D007282 6.1e-15 85.1 112 48.2
Sc05g0002430 Simmondsia chinensis HOM05D005884 ORTHO05D007282 6.1e-15 85.1 141 44.0
CDE02G3372 Ceratophyllum demersum HOM05D005884 ORTHO05D007282 1.0e-14 84.3 118 40.7
VMungo0331G1358 Vigna mungo HOM05D005884 ORTHO05D007282 1.0e-14 84.3 113 46.0
Actinidia23729 Actinidia chinensis HOM05D005884 ORTHO05D007282 1.4e-14 84.0 146 44.5
Gohir.D07G162500 Gossypium hirsutum HOM05D005884 ORTHO05D007282 1.4e-14 84.0 95 50.5
Sabra02G0183600 Salix brachista HOM05D005884 ORTHO05D007282 1.8e-14 83.6 85 50.6
Ca_20129_v3 Cicer arietinum L. HOM05D005884 ORTHO05D007282 3.1e-14 82.8 117 46.2
TPR.G8219 Trifolium pratense HOM05D005884 ORTHO05D007282 3.1e-14 82.8 137 46.7
Medtr4g017880 Medicago truncatula HOM05D005884 ORTHO05D007282 5.2e-14 82.0 115 48.7
vmacro14762 Vaccinium macrocarpon HOM05D005884 ORTHO05D007282 5.2e-14 82.0 135 44.4
EL10Ac7g17785 Beta vulgaris HOM05D005884 ORTHO05D007282 6.8e-14 81.6 181 38.1
Prupe.8G204400 Prunus persica HOM05D005884 ORTHO05D007282 6.8e-14 81.6 107 51.4
Rhsim01G0257200 Rhododendron simsii HOM05D005884 ORTHO05D007282 6.8e-14 81.6 130 43.1
MELO3C012764.2 Cucumis melo HOM05D005884 ORTHO05D007282 8.9e-14 81.3 115 46.1
ClCG09G009110 Citrullus lanatus HOM05D005884 ORTHO05D007282 1.2e-13 80.9 109 45.9
CsaV3_7G025830 Cucumis sativus L. HOM05D005884 ORTHO05D007282 1.2e-13 80.9 115 44.3
Haze_24787 Corylus avellana HOM05D005884 ORTHO05D007282 2.0e-13 80.1 113 46.0
SGA_v2.0_scaffold8G04650 Striga asiatica HOM05D005884 ORTHO05D007282 2.0e-13 80.1 138 42.0
Cfa002560 Carpinus fangiana HOM05D005884 ORTHO05D007282 2.6e-13 79.7 113 46.0
Hund18350 Selenicereus undatus HOM05D005884 ORTHO05D007282 2.6e-13 79.7 147 40.8
AUR62008873 Chenopodium quinoa HOM05D005884 ORTHO05D007282 3.4e-13 79.3 125 42.4
TAR633G1722 Trochodendron aralioides HOM05D005884 ORTHO05D007282 3.4e-13 79.3 99 49.5
ATR0736G055 Amborella trichopoda HOM05D005884 ORTHO05D007282 7.5e-13 78.2 132 41.7
Psat7g243200 Pisum sativum HOM05D005884 ORTHO05D007282 7.5e-13 78.2 184 38.0
Gorai.001G186100 Gossypium raimondii HOM05D005884 ORTHO05D007282 1.3e-12 77.4 135 40.0
Zm00001eb426500 Zea mays HOM05D005884 ORTHO05D007282 1.3e-12 77.4 105 42.9
MD10G1165900 Malus domestica HOM05D005884 ORTHO05D007282 1.7e-12 77.0 67 64.2
Gorai.009G365800 Gossypium raimondii HOM05D005884 ORTHO05D007282 2.2e-12 76.6 77 51.9
arahy.Tifrunner.gnm1.ann1.Q3DN0U Arachis hypogaea HOM05D005884 ORTHO05D007282 6.4e-12 75.1 145 40.0
Sed0001531 Sechium edule HOM05D005884 ORTHO05D007282 6.4e-12 75.1 101 43.6
Os04g0513000 Oryza sativa ssp. japonica HOM05D005884 ORTHO05D007282 8.3e-12 74.7 78 48.7
MSTRG.17548 Avicennia marina HOM05D005884 ORTHO05D007282 1.9e-11 73.6 86 47.7
unitig_22.g6325 Utricularia gibba HOM05D005884 ORTHO05D007282 1.9e-11 73.6 131 41.2
arahy.Tifrunner.gnm1.ann1.C60K2U Arachis hypogaea HOM05D005884 ORTHO05D007282 4.1e-11 72.4 133 40.6
MBI10_g44186_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 4.1e-11 72.4 114 42.1
Mapoly0028s0026 Marchantia polymorpha HOM05D005884 ORTHO05D007282 2.7e-10 69.7 66 57.6
MBI06_g14323_MAGBIO Magnolia biondii HOM05D005884 ORTHO05D007282 3.5e-10 69.3 84 45.2
SEGI_25444 Sequoiadendron giganteum HOM05D005884 ORTHO05D007282 3.0e-09 66.2 84 44.0
TAR194G0001 Trochodendron aralioides HOM05D005884 ORTHO05D004773 3.0e-09 66.2 86 44.2
Gohir.A09G200610 Gossypium hirsutum HOM05D005884 ORTHO05D007282 5.0e-09 65.5 66 51.5
AagrBONN_evm.TU.Sc2ySwM_228.3174 Anthoceros agrestis HOM05D005884 ORTHO05D007282 1.9e-08 63.5 68 52.9
Atru.chr3.3178 Acer truncatum HOM05D005884 ORTHO05D007282 2.5e-08 63.2 58 55.2
Sed0008993 Sechium edule HOM05D005884 ORTHO05D007282 4.3e-08 62.4 108 40.7
SalBow2G0198 Salvia bowleyana HOM05D005884 ORTHO05D007282 4.7e-07 58.9 56 53.6


User provided reference genes

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