Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G12970 Arabidopsis thaliana HOM05D006940 ORTHO05D008626 5.2e-56 220.7 103 100.0
AL9U11560 Arabidopsis lyrata HOM05D006940 ORTHO05D008626 2.0e-52 208.8 103 95.1
Carub.0007s2980 Capsella rubella HOM05D006940 ORTHO05D008626 7.3e-50 200.3 103 92.2
CARHR218280 Cardamine hirsuta HOM05D006940 ORTHO05D008626 1.8e-48 195.7 104 87.5
Sp7g09835 Schrenkiella parvula HOM05D006940 ORTHO05D008626 3.4e-47 191.4 103 88.3
BcaB04g17733 Brassica carinata HOM05D006940 ORTHO05D008626 1.3e-43 179.5 103 82.5
A08p07220 Brassica napus HOM05D006940 ORTHO05D008626 1.7e-43 179.1 103 81.6
C08p08940 Brassica napus HOM05D006940 ORTHO05D008626 1.7e-43 179.1 103 81.6
BolC8t47738H Brassica oleracea HOM05D006940 ORTHO05D008626 1.7e-43 179.1 103 81.6
BraA08t32735Z Brassica rapa HOM05D006940 ORTHO05D008626 1.7e-43 179.1 103 81.6
Thhalv10026516m.g Eutrema salsugineum HOM05D006940 ORTHO05D008626 1.1e-42 176.4 103 83.5
Aa31sc38G90 Aethionema arabicum HOM05D006940 ORTHO05D008626 1.2e-33 146.4 100 72.0
TWI36G1176 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 5.6e-26 120.9 104 56.7
Thecc.01G212400 Theobroma cacao HOM05D006940 ORTHO05D008626 1.6e-25 119.4 110 58.2
Duzib211G0506 Durio zibethinus HOM05D006940 ORTHO05D008626 2.8e-25 118.6 101 56.4
Duzib133G0939 Durio zibethinus HOM05D006940 ORTHO05D008626 4.7e-25 117.9 111 55.0
Glyma.08G345100 Glycine max HOM05D006940 ORTHO05D008626 6.2e-25 117.5 101 59.4
Psat0s1437g0080 Pisum sativum HOM05D006940 ORTHO05D008626 6.2e-25 117.5 99 56.6
QL09p045850 Quercus lobata HOM05D006940 ORTHO05D008626 8.1e-25 117.1 113 54.0
Migut.D02467 Erythranthe guttata HOM05D006940 ORTHO05D008626 1.4e-24 116.3 109 54.1
Manes.12G052500 Manihot esculenta HOM05D006940 ORTHO05D008626 1.4e-24 116.3 102 59.8
RcHm_v2.0_Chr6g0283181 Rosa chinensis HOM05D006940 ORTHO05D008626 1.4e-24 116.3 103 57.3
Gorai.N003800 Gossypium raimondii HOM05D006940 ORTHO05D008626 1.8e-24 115.9 100 56.0
MD10G1153200 Malus domestica HOM05D006940 ORTHO05D008626 1.8e-24 115.9 107 57.0
CsaV3_7G026610 Cucumis sativus L. HOM05D006940 ORTHO05D008626 2.4e-24 115.5 94 61.7
Glyma.18G152800 Glycine max HOM05D006940 ORTHO05D008626 2.4e-24 115.5 99 57.6
Gohir.D11G148100 Gossypium hirsutum HOM05D006940 ORTHO05D008626 3.1e-24 115.2 112 50.9
Gorai.007G158800 Gossypium raimondii HOM05D006940 ORTHO05D008626 3.1e-24 115.2 112 51.8
Lsat_1_v5_gn_9_16040 Lactuca sativa HOM05D006940 ORTHO05D008626 3.1e-24 115.2 82 69.5
FAN24G1170 Fragaria x ananassa HOM05D006940 ORTHO05D008626 4.0e-24 114.8 100 60.0
Gohir.A11G141800 Gossypium hirsutum HOM05D006940 ORTHO05D008626 4.0e-24 114.8 112 50.9
Prupe.8G192000 Prunus persica HOM05D006940 ORTHO05D008626 4.0e-24 114.8 104 56.7
FvH4_2g17950 Fragaria vesca HOM05D006940 ORTHO05D008626 5.2e-24 114.4 100 60.0
FAN15G1530 Fragaria x ananassa HOM05D006940 ORTHO05D008626 5.2e-24 114.4 100 60.0
TWI75G1309 Tripterygium wilfordii HOM05D006940 ORTHO05D008626 5.2e-24 114.4 102 56.9
Atru.chr6.1604 Acer truncatum HOM05D006940 ORTHO05D008626 6.8e-24 114.0 97 59.8
Ciclev10033128m.g Citrus clementina HOM05D006940 ORTHO05D008626 6.8e-24 114.0 112 58.9
Duzib138G0498 Durio zibethinus HOM05D006940 ORTHO05D008626 6.8e-24 114.0 109 56.0
Lalb_Chr21g0315011 Lupinus albus HOM05D006940 ORTHO05D008626 6.8e-24 114.0 98 54.1
MD05G1163400 Malus domestica HOM05D006940 ORTHO05D008626 6.8e-24 114.0 101 59.4
Potri.002G249901 Populus trichocarpa HOM05D006940 ORTHO05D008626 8.9e-24 113.6 105 53.3
Gohir.D07G166700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.2e-23 113.2 100 55.0
MELO3C021111.2 Cucumis melo HOM05D006940 ORTHO05D008626 1.5e-23 112.8 53 92.5
Dinv28817 Davidia involucrata HOM05D006940 ORTHO05D008626 1.5e-23 112.8 107 53.3
Sabra02G0190300 Salix brachista HOM05D006940 ORTHO05D008626 1.5e-23 112.8 77 67.5
Gohir.A07G197033 Gossypium hirsutum HOM05D006940 ORTHO05D008626 2.0e-23 112.5 112 55.4
Medtr7g052120 Medicago truncatula HOM05D006940 ORTHO05D008626 2.0e-23 112.5 76 63.2
arahy.Tifrunner.gnm1.ann1.ZA5GY6 Arachis hypogaea HOM05D006940 ORTHO05D008626 2.6e-23 112.1 60 83.3
Sed0013755 Sechium edule HOM05D006940 ORTHO05D008626 2.6e-23 112.1 68 72.1
TPR.G26809 Trifolium pratense HOM05D006940 ORTHO05D008626 2.6e-23 112.1 98 57.1
vmacro02811 Vaccinium macrocarpon HOM05D006940 ORTHO05D008626 2.6e-23 112.1 49 95.9
Eucgr.K02098 Eucalyptus grandis HOM05D006940 ORTHO05D008626 3.4e-23 111.7 100 57.0
FAN27G2163 Fragaria x ananassa HOM05D006940 ORTHO05D008626 3.4e-23 111.7 100 59.0
Gohir.A07G159700 Gossypium hirsutum HOM05D006940 ORTHO05D008626 3.4e-23 111.7 100 54.0
PGSC0003DMG400007740 Solanum tuberosum HOM05D006940 ORTHO05D008626 3.4e-23 111.7 96 56.2
Nitab4.5_0000038g0040 Nicotiana tabacum HOM05D006940 ORTHO05D008626 4.4e-23 111.3 98 55.1
Phvul.008G137700 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 4.4e-23 111.3 54 87.0
SalBow6G3514 Salvia bowleyana HOM05D006940 ORTHO05D008626 4.4e-23 111.3 60 78.3
Hma1.2p1_0781F.1_g216880 Hydrangea macrophylla HOM05D006940 ORTHO05D008626 5.8e-23 110.9 49 93.9
Lj1g0019270 Lotus japonicus HOM05D006940 ORTHO05D008626 5.8e-23 110.9 98 55.1
CANSAT01G0416 Cannabis sativa HOM05D006940 ORTHO05D008626 7.6e-23 110.5 102 54.9
CANSAT01G0831 Cannabis sativa HOM05D006940 ORTHO05D008626 7.6e-23 110.5 102 54.9
CANSAT01G1056 Cannabis sativa HOM05D006940 ORTHO05D008626 7.6e-23 110.5 102 54.9
Sed0027137 Sechium edule HOM05D006940 ORTHO05D008626 7.6e-23 110.5 66 71.2
CSS0001884 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 9.9e-23 110.2 104 51.0
CiPaw.13G054100 Carya illinoinensis HOM05D006940 ORTHO05D008626 9.9e-23 110.2 113 54.0
Manes.13G053500 Manihot esculenta HOM05D006940 ORTHO05D008626 9.9e-23 110.2 55 89.1
Rhsim13G0052100 Rhododendron simsii HOM05D006940 ORTHO05D008626 1.3e-22 109.8 50 94.0
VMungo0331G0069 Vigna mungo HOM05D006940 ORTHO05D008626 1.3e-22 109.8 110 50.9
Gohir.D07G203400 Gossypium hirsutum HOM05D006940 ORTHO05D008626 1.7e-22 109.4 49 91.8
Gorai.001G228900 Gossypium raimondii HOM05D006940 ORTHO05D008626 1.7e-22 109.4 49 91.8
PGR044G1150 Punica granatum HOM05D006940 ORTHO05D008626 1.7e-22 109.4 50 92.0
TAR365G0827 Trochodendron aralioides HOM05D006940 ORTHO05D008626 1.7e-22 109.4 50 90.0
CSS0043498 Camellia sinensis var. sinensis HOM05D006940 ORTHO05D008626 2.2e-22 109.0 99 56.6
Cpa.g.sc8.85 Carica papaya HOM05D006940 ORTHO05D008626 2.2e-22 109.0 50 92.0
MSTRG.18810 Avicennia marina HOM05D006940 ORTHO05D008626 2.9e-22 108.6 90 56.7
CiPaw.14G043100 Carya illinoinensis HOM05D006940 ORTHO05D008626 2.9e-22 108.6 103 54.4
Haze_03308 Corylus avellana HOM05D006940 ORTHO05D008626 2.9e-22 108.6 50 90.0
MBI07_g41210_MAGBIO Magnolia biondii HOM05D006940 ORTHO05D008626 3.8e-22 108.2 106 50.0
SalBow7G1139 Salvia bowleyana HOM05D006940 ORTHO05D008626 3.8e-22 108.2 88 60.2
Lsat_1_v5_gn_8_97920 Lactuca sativa HOM05D006940 ORTHO05D008626 4.9e-22 107.8 57 78.9
DCAR_012690 Daucus carota HOM05D000328 ORTHO05D008626 6.4e-22 107.5 66 66.7
Nn1g08072 Nelumbo nucifera HOM05D006940 ORTHO05D008626 6.4e-22 107.5 50 88.0
Nitab4.5_0003186g0010 Nicotiana tabacum HOM05D006940 ORTHO05D008626 6.4e-22 107.5 50 90.0
HanXRQChr08g0231211 Helianthus annuus HOM05D006940 ORTHO05D008626 8.4e-22 107.1 105 53.3
Lalb_Chr03g0041181 Lupinus albus HOM05D006940 ORTHO05D008626 8.4e-22 107.1 99 53.5
TPR.G2024 Trifolium pratense HOM05D006940 ORTHO05D008626 1.1e-21 106.7 52 82.7
Phvul.010G031000 Phaseolus vulgaris HOM05D006940 ORTHO05D008626 1.4e-21 106.3 96 53.1
Solyc08g066610.3 Solanum lycopersicum HOM05D006940 ORTHO05D008626 1.4e-21 106.3 50 88.0
Sopen08g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 1.4e-21 106.3 50 88.0
MSTRG.20995 Avicennia marina HOM05D006940 ORTHO05D008626 1.9e-21 105.9 106 53.8
Nn7g37664 Nelumbo nucifera HOM05D006940 ORTHO05D008626 1.9e-21 105.9 54 79.6
PSO017G0530 Papaver somniferum HOM05D006940 ORTHO05D008626 2.4e-21 105.5 50 84.0
PSO675G0779 Papaver somniferum HOM05D006940 ORTHO05D008626 2.4e-21 105.5 50 84.0
Sopen09g020450 Solanum pennellii HOM05D006940 ORTHO05D008626 3.2e-21 105.1 50 88.0
Sc01g0005680 Simmondsia chinensis HOM05D006940 ORTHO05D008626 4.2e-21 104.8 109 52.3
COL.COLO4_06154 Corchorus olitorius HOM05D006940 ORTHO05D008626 5.4e-21 104.4 49 87.8
Os01g0914400 Oryza sativa ssp. japonica HOM05D006940 ORTHO05D008626 9.2e-21 103.6 67 64.2
EL10Ac5g11605 Beta vulgaris HOM05D006940 ORTHO05D008626 1.6e-20 102.8 50 80.0
Oeu064661.1 Olea europaea HOM05D006940 ORTHO05D008626 1.6e-20 102.8 48 85.4
THA.LOC104818992 Tarenaya hassleriana HOM05D006940 ORTHO05D008626 2.1e-20 102.4 53 77.4
Zm00001eb364920 Zea mays HOM05D006940 ORTHO05D008626 2.7e-20 102.1 112 48.2
GSVIVG01031691001 Vitis vinifera HOM05D006940 ORTHO05D008626 3.5e-20 101.7 47 83.0
Psat0s4060g0200 Pisum sativum HOM05D006940 ORTHO05D008626 6.0e-20 100.9 95 51.6
arahy.Tifrunner.gnm1.ann1.7YS827 Arachis hypogaea HOM05D006940 ORTHO05D008626 7.8e-20 100.5 49 85.7
TAR636G0441 Trochodendron aralioides HOM05D006940 ORTHO05D008626 7.8e-20 100.5 48 83.3
Zm00001eb143570 Zea mays HOM05D006940 ORTHO05D008626 1.0e-19 100.1 67 65.7
HanXRQChr16g0507861 Helianthus annuus HOM05D006940 ORTHO05D008626 1.7e-19 99.4 54 77.8
MSTRG.12756 Avicennia marina HOM05D006940 ORTHO05D008626 3.0e-19 98.6 56 71.4
ATR0609G114 Amborella trichopoda HOM05D006940 ORTHO05D008626 2.5e-18 95.5 49 81.6
HPP92_011792 Vanilla planifolia HOM05D006940 ORTHO05D008626 2.8e-17 92.0 51 72.5
SEGI_36325 Sequoiadendron giganteum HOM05D006940 ORTHO05D008626 6.2e-17 90.9 109 44.0
AUR62042875 Chenopodium quinoa HOM05D006940 ORTHO05D008626 1.8e-16 89.4 42 78.6
Zm00001eb174960 Zea mays HOM05D006940 ORTHO05D008626 3.1e-16 88.6 49 69.4
PGSC0003DMG400020111 Solanum tuberosum HOM05D006940 ORTHO05D008626 9.9e-15 83.6 104 46.2
SMO351G0191 Selaginella moellendorffii HOM05D006940 ORTHO05D008626 4.9e-14 81.3 51 64.7


User provided reference genes

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