Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AT4G12540 Arabidopsis thaliana HOM05D006741 ORTHO05D008434 4.1e-251 870.9 438 100.0
AL6G47480 Arabidopsis lyrata HOM05D006741 ORTHO05D008434 1.8e-206 722.6 464 82.5
Carub.0006s3171 Capsella rubella HOM05D006741 ORTHO05D008434 5.6e-176 621.3 475 71.4
Thhalv10028639m.g Eutrema salsugineum HOM05D006741 ORTHO05D008434 5.3e-174 614.8 470 71.3
SpUn0055_0020 Schrenkiella parvula HOM05D006741 ORTHO05D008434 1.1e-171 607.1 469 70.8
Sp6g04980 Schrenkiella parvula HOM05D006741 ORTHO05D008434 7.1e-171 604.4 476 69.7
CARHR253650 Cardamine hirsuta HOM05D006741 ORTHO05D008434 3.2e-155 552.4 430 71.4
BraA09t38254Z Brassica rapa HOM05D006741 ORTHO05D008434 1.0e-153 547.4 469 67.2
A09p26830 Brassica napus HOM05D006741 ORTHO05D008434 2.1e-151 539.7 458 67.2
Aa31LG9G10130 Aethionema arabicum HOM05D006741 ORTHO05D008434 1.5e-149 533.5 445 65.6
BcaC04g21238 Brassica carinata HOM05D006741 ORTHO05D008434 7.6e-149 531.2 465 66.5
C09p34000 Brassica napus HOM05D006741 ORTHO05D008434 7.6e-149 531.2 465 66.5
BolC9t56238H Brassica oleracea HOM05D006741 ORTHO05D008434 7.6e-149 531.2 465 66.5
THA.LOC104806335 Tarenaya hassleriana HOM05D006741 ORTHO05D008434 3.5e-117 426.0 453 54.7
Thecc.06G100200 Theobroma cacao HOM05D006741 ORTHO05D008434 9.5e-75 285.0 469 40.9
Cpa.g.sc25.10 Carica papaya HOM05D006741 ORTHO05D008434 6.8e-73 278.9 452 41.4
Cfa003646 Carpinus fangiana HOM05D006741 ORTHO05D008434 2.6e-72 276.9 471 40.1
Duzib235G1269 Durio zibethinus HOM05D006741 ORTHO05D008434 1.4e-70 271.2 462 41.6
QL05p019947 Quercus lobata HOM05D006741 ORTHO05D008434 2.4e-70 270.4 463 38.9
TWI75G1374 Tripterygium wilfordii HOM05D006741 ORTHO05D008434 2.4e-70 270.4 461 41.2
Actinidia09006 Actinidia chinensis HOM05D006741 ORTHO05D008434 7.1e-70 268.9 463 39.5
Duzib192G0766 Durio zibethinus HOM05D006741 ORTHO05D008434 1.6e-69 267.7 466 39.9
COL.COLO4_30514 Corchorus olitorius HOM05D006741 ORTHO05D008434 7.8e-69 265.4 469 38.8
Manes.11G033400 Manihot esculenta HOM05D006741 ORTHO05D008434 7.8e-69 265.4 457 40.3
Sabra05G0046800 Salix brachista HOM05D006741 ORTHO05D008434 1.3e-68 264.6 460 39.1
Potri.013G040800 Populus trichocarpa HOM05D006741 ORTHO05D008434 3.0e-68 263.5 450 40.4
Potri.005G053300 Populus trichocarpa HOM05D006741 ORTHO05D008434 6.6e-68 262.3 445 40.0
Haze_15849 Corylus avellana HOM05D006741 ORTHO05D008434 1.9e-67 260.8 439 40.1
CiPaw.01G231300 Carya illinoinensis HOM05D006741 ORTHO05D008434 7.3e-67 258.8 472 39.8
CSS0034583 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 1.4e-65 254.6 459 39.7
CSS0005978 Camellia sinensis var. sinensis HOM05D006741 ORTHO05D008434 1.8e-65 254.2 459 39.7
Actinidia39136 Actinidia chinensis HOM05D006741 ORTHO05D008434 3.1e-65 253.4 468 38.9
Rhsim08G0227700 Rhododendron simsii HOM05D006741 ORTHO05D008434 1.2e-64 251.5 471 39.1
Atru.chr1.3525 Acer truncatum HOM05D006741 ORTHO05D008434 2.6e-64 250.4 463 39.5
Sabra13G0037700 Salix brachista HOM05D006741 ORTHO05D008434 2.6e-64 250.4 445 38.0
BcaC01g04588 Brassica carinata HOM05D006741 ORTHO05D008434 6.4e-63 245.7 432 42.4
Dinv30435 Davidia involucrata HOM05D006741 ORTHO05D008434 8.4e-63 245.4 443 38.4
Gohir.A06G189500 Gossypium hirsutum HOM05D006741 ORTHO05D008434 1.4e-62 244.6 456 37.1
PGR102G3207 Punica granatum HOM05D006741 ORTHO05D008434 7.1e-62 242.3 456 38.6
TAR636G1866 Trochodendron aralioides HOM05D006741 ORTHO05D008434 1.6e-61 241.1 466 38.4
CANSAT56G2677 Cannabis sativa HOM05D006741 ORTHO05D008434 1.0e-60 238.4 476 37.8
vmacro17014 Vaccinium macrocarpon HOM05D006741 ORTHO05D008434 3.0e-60 236.9 440 39.8
Nn6g35322 Nelumbo nucifera HOM05D006741 ORTHO05D008434 8.7e-60 235.3 483 38.3
Lalb_Chr01g0013161 Lupinus albus HOM05D006741 ORTHO05D008434 7.3e-59 232.3 469 36.5
Gorai.010G230700 Gossypium raimondii HOM05D006741 ORTHO05D008434 1.6e-58 231.1 456 35.7
Sed0020930 Sechium edule HOM05D006741 ORTHO05D008434 2.8e-58 230.3 474 36.9
Gohir.D06G197900 Gossypium hirsutum HOM05D006741 ORTHO05D008434 6.2e-58 229.2 457 36.5
Lj3g0008384 Lotus japonicus HOM05D006741 ORTHO05D008434 1.4e-57 228.0 455 36.9
MELO3C013001.2 Cucumis melo HOM05D006741 ORTHO05D008434 3.1e-57 226.9 491 37.1
CsaV3_3G023590 Cucumis sativus L. HOM05D006741 ORTHO05D008434 5.3e-57 226.1 460 37.6
Oeu017120.1 Olea europaea HOM05D006741 ORTHO05D008434 9.0e-57 225.3 467 37.5
Migut.I00896 Erythranthe guttata HOM05D006741 ORTHO05D008434 1.5e-56 224.6 441 37.4
MSTRG.11026 Avicennia marina HOM05D006741 ORTHO05D008434 3.4e-56 223.4 454 36.8
MD09G1202700 Malus domestica HOM05D006741 ORTHO05D008434 5.8e-56 222.6 458 36.5
MD17G1183900 Malus domestica HOM05D006741 ORTHO05D008434 2.2e-55 220.7 461 37.3
Medtr8g014490 Medicago truncatula HOM05D006741 ORTHO05D008434 2.2e-55 220.7 469 36.5
SGA_v2.0_scaffold69G23318 Striga asiatica HOM05D006741 ORTHO05D008434 1.1e-54 218.4 463 36.3
Eucgr.J02937 Eucalyptus grandis HOM05D006741 ORTHO05D008434 1.9e-54 217.6 417 37.9
DCAR_023081 Daucus carota HOM05D006741 ORTHO05D008434 2.4e-54 217.2 456 37.1
ClCG07G013320 Citrullus lanatus HOM05D006741 ORTHO05D008434 9.3e-54 215.3 510 34.7
Prupe.3G058900 Prunus persica HOM05D006741 ORTHO05D008434 9.3e-54 215.3 463 35.9
Ciclev10027417m.g Citrus clementina HOM05D006741 ORTHO05D008434 1.2e-53 214.9 445 38.7
Ca_23263_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 2.1e-53 214.2 455 35.4
Ca_23272_v3 Cicer arietinum L. HOM05D006741 ORTHO05D008434 2.1e-53 214.2 455 35.4
Cc04_g02540 Coffea canephora HOM05D006741 ORTHO05D008434 1.0e-52 211.8 461 36.4
GSVIVG01016979001 Vitis vinifera HOM05D006741 ORTHO05D008434 1.7e-52 211.1 421 38.0
Psat4g197400 Pisum sativum HOM05D006741 ORTHO05D008434 5.1e-52 209.5 456 36.2
Sc12g0010170 Simmondsia chinensis HOM05D006741 ORTHO05D008434 5.1e-52 209.5 480 34.0
PSO210G4778 Papaver somniferum HOM05D006741 ORTHO05D008434 6.6e-52 209.1 470 36.4
Aqoxy7G03978 Aquilegia oxysepala HOM05D006741 ORTHO05D008434 1.3e-50 204.9 468 35.9
Lj9A513G60 Lonicera japonica HOM05D006741 ORTHO05D008434 2.1e-50 204.1 383 38.1
PSO210G6928 Papaver somniferum HOM05D006741 ORTHO05D008434 3.6e-50 203.4 469 35.6
Nitab4.5_0001172g0120 Nicotiana tabacum HOM05D006741 ORTHO05D008434 6.2e-50 202.6 491 34.4
PGSC0003DMG400026441 Solanum tuberosum HOM05D006741 ORTHO05D008434 1.5e-48 198.0 498 35.3
EL10Ac3g05317 Beta vulgaris HOM05D006741 ORTHO05D008434 4.5e-48 196.4 454 35.9
MBI01_g10133_MAGBIO Magnolia biondii HOM05D006741 ORTHO05D008434 9.9e-48 195.3 488 34.0
Solyc12g044620.2 Solanum lycopersicum HOM05D006741 ORTHO05D008434 9.9e-48 195.3 497 35.2
arahy.Tifrunner.gnm1.ann1.CS2PXA Arachis hypogaea HOM05D006741 ORTHO05D008434 2.2e-47 194.1 447 33.8
arahy.Tifrunner.gnm1.ann1.X4D5DL Arachis hypogaea HOM05D006741 ORTHO05D008434 2.2e-47 194.1 445 33.7
TPR.G26946 Trifolium pratense HOM05D006741 ORTHO05D008434 2.9e-47 193.7 510 34.1
Glyma.08G200900 Glycine max HOM05D006741 ORTHO05D008434 6.4e-47 192.6 434 35.0
Ah.01g005790 Amaranthus hybridus HOM05D006741 ORTHO05D008434 2.4e-46 190.7 480 33.1
FvH4_6g32410 Fragaria vesca HOM05D006741 ORTHO05D008434 9.3e-46 188.7 448 35.3
ECA232G4726 Erigeron canadensis HOM05D006741 ORTHO05D008434 1.6e-45 188.0 430 33.3
AUR62031924 Chenopodium quinoa HOM05D006741 ORTHO05D008434 2.7e-45 187.2 457 35.0
Glyma.07G015400 Glycine max HOM05D006741 ORTHO05D008434 4.6e-45 186.4 428 36.4
FAN14G5382 Fragaria x ananassa HOM05D006741 ORTHO05D008434 6.0e-45 186.0 448 34.8
Peaxi162Scf00177g00125 Petunia axillaris HOM05D006741 ORTHO05D008434 8.7e-44 182.2 443 35.9
FAN02G4526 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.5e-43 181.4 456 34.6
Sopen12g023080 Solanum pennellii HOM05D006741 ORTHO05D008434 4.3e-43 179.9 498 34.1
RcHm_v2.0_Chr2g0140551 Rosa chinensis HOM05D006741 ORTHO05D008434 9.6e-43 178.7 438 33.8
FAN05G1069 Fragaria x ananassa HOM05D006741 ORTHO05D008434 1.3e-42 178.3 443 34.1
Lsat_1_v5_gn_4_97420 Lactuca sativa HOM05D006741 ORTHO05D008434 1.3e-42 178.3 458 31.2
Nitab4.5_0004241g0050 Nicotiana tabacum HOM05D006741 ORTHO05D008434 1.6e-42 177.9 456 35.3
VMungo0331G0583 Vigna mungo HOM05D006741 ORTHO05D008434 1.6e-42 177.9 462 34.4
Hund28870 Selenicereus undatus HOM05D006741 ORTHO05D008434 3.7e-42 176.8 464 34.3
HanXRQChr09g0276261 Helianthus annuus HOM05D006741 ORTHO05D008434 1.1e-41 175.3 430 36.7
Hund28829 Selenicereus undatus HOM05D006741 ORTHO05D008434 1.1e-41 175.3 464 34.1
Phvul.010G145200 Phaseolus vulgaris HOM05D006741 ORTHO05D008434 4.5e-40 169.9 463 33.0
ClCG00G003340 Citrullus lanatus HOM05D006741 ORTHO05D008434 1.7e-39 167.9 428 32.7
FAN09G4229 Fragaria x ananassa HOM05D002451 ORTHO05D005601 1.2e-37 161.8 424 34.7
Nn8g39070 Nelumbo nucifera HOM05D006741 ORTHO05D008434 2.3e-36 157.5 346 36.4
Hma1.2p1_0430F.1_g151390 Hydrangea macrophylla HOM05D006741 ORTHO05D008434 3.0e-36 157.1 420 32.6
CDE02G1085 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 4.1e-33 146.7 446 28.5
ATR0705G093 Amborella trichopoda HOM05D006741 ORTHO05D008434 5.9e-24 116.3 358 30.4
Os05g0532500 Oryza sativa ssp. japonica HOM05D006741 ORTHO05D008434 2.9e-23 114.0 485 27.2
Dinv37976 Davidia involucrata HOM05D006741 ORTHO05D008434 1.1e-22 112.1 231 36.8
Cpa.g.sc25.28 Carica papaya HOM05D006741 ORTHO05D008434 1.9e-22 111.3 288 33.3
BolC3t15911H Brassica oleracea HOM05D006741 ORTHO05D008434 1.5e-19 101.7 289 34.3
C03p36010 Brassica napus HOM05D006741 ORTHO05D008434 4.3e-19 100.1 289 34.3
Zm00001eb353790 Zea mays HOM05D006741 ORTHO05D008434 4.8e-18 96.7 323 30.0
CDE04G0136 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 3.8e-15 87.0 215 29.8
unitig_748.g7441 Utricularia gibba HOM05D006741 ORTHO05D008434 6.5e-15 86.3 169 36.1
TAR624G0518 Trochodendron aralioides HOM05D006741 ORTHO05D008434 6.7e-12 76.3 204 31.9
unitig_748.g7440 Utricularia gibba HOM05D006741 ORTHO05D008434 1.3e-10 72.0 149 38.3
Actinidia32099 Actinidia chinensis HOM05D006741 ORTHO05D008434 7.2e-06 56.2 165 32.7
CDE04G1568 Ceratophyllum demersum HOM05D006741 ORTHO05D008434 7.2e-06 56.2 83 38.6


User provided reference genes

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